data_8GET # _model_server_result.job_id qFB86IjN4oBalvXt93S8zA _model_server_result.datetime_utc '2024-11-24 23:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8get # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":801}' # _entry.id 8GET # _exptl.entry_id 8GET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.139 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'beta-D-glucopyranuronic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GET _cell.length_a 100.466 _cell.length_b 146.29 _cell.length_c 281.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GET _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,M,N,O,P 1 1 B,H,I,J,K,L 2 1 D,Q,R 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 0 -73.145 140.716 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 Q N N # _chem_comp.formula 'C6 H10 O7' _chem_comp.formula_weight 194.139 _chem_comp.id BDP _chem_comp.mon_nstd_flag . _chem_comp.name 'beta-D-glucopyranuronic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-glucuronic acid;D-glucuronic acid;glucuronic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BDP sing 70 n n C1 O5 BDP sing 71 n n C1 O1 BDP sing 72 n n C1 H1 BDP sing 73 n n C2 C3 BDP sing 74 n n C2 O2 BDP sing 75 n n C2 H2 BDP sing 76 n n C3 C4 BDP sing 77 n n C3 O3 BDP sing 78 n n C3 H3 BDP sing 79 n n C4 C5 BDP sing 80 n n C4 O4 BDP sing 81 n n C4 H4 BDP sing 82 n n C5 C6 BDP sing 83 n n C5 O5 BDP sing 84 n n C5 H5 BDP sing 85 n n C6 O6A BDP doub 86 n n C6 O6B BDP sing 87 n n O2 HO2 BDP sing 88 n n O3 HO3 BDP sing 89 n n O4 HO4 BDP sing 90 n n O1 HO1 BDP sing 91 n n O6B HO6B BDP sing 92 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BDP DGlcpAb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BDP 'b-D-glucopyranuronic acid' 'COMMON NAME' GMML 1 BDP b-D-GlcpA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BDP GlcA 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8GET _atom_sites.fract_transf_matrix[1][1] 0.009954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 801 801 GOL GOL . F 3 BDP A 1 802 802 BDP GLC . G 4 FMN A 1 803 803 FMN FMN . H 2 GOL B 1 801 801 GOL GOL . I 2 GOL B 1 802 802 GOL GOL . J 2 GOL B 1 803 803 GOL GOL . K 3 BDP B 1 804 804 BDP GLC . L 4 FMN B 1 805 805 FMN FMN . M 5 ZG5 C 1 1601 801 ZG5 NOR . N 2 GOL C 1 1602 802 GOL GOL . O 2 GOL C 1 1603 803 GOL GOL . P 4 FMN C 1 1604 804 FMN FMN . Q 3 BDP D 1 801 801 BDP GLC . R 2 GOL D 1 802 802 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BDP . . . Q 3 -10.208 -54.244 -34.994 0.89 100.22 ? C1 BDP 801 D 1 HETATM 2 C C2 BDP . . . Q 3 -8.933 -55.011 -35.3 0.89 93.16 ? C2 BDP 801 D 1 HETATM 3 C C3 BDP . . . Q 3 -7.903 -54.114 -35.852 0.89 90.54 ? C3 BDP 801 D 1 HETATM 4 C C4 BDP . . . Q 3 -8.502 -53.288 -36.935 0.89 100.78 ? C4 BDP 801 D 1 HETATM 5 C C5 BDP . . . Q 3 -9.495 -52.294 -36.346 0.89 92.75 ? C5 BDP 801 D 1 HETATM 6 C C6 BDP . . . Q 3 -10.636 -52.009 -37.268 0.89 99.51 ? C6 BDP 801 D 1 HETATM 7 O O2 BDP . . . Q 3 -8.352 -55.496 -34.078 0.89 83.14 ? O2 BDP 801 D 1 HETATM 8 O O3 BDP . . . Q 3 -6.821 -54.906 -36.401 0.89 99.55 ? O3 BDP 801 D 1 HETATM 9 O O4 BDP . . . Q 3 -7.464 -52.562 -37.583 0.89 112.81 ? O4 BDP 801 D 1 HETATM 10 O O5 BDP . . . Q 3 -10.033 -52.758 -35.064 0.89 100.85 ? O5 BDP 801 D 1 HETATM 11 O O6A BDP . . . Q 3 -11.184 -52.918 -37.94 0.89 114.49 ? O6A BDP 801 D 1 HETATM 12 O O1 BDP . . . Q 3 -11.207 -54.712 -35.785 0.89 91.21 ? O1 BDP 801 D 1 HETATM 13 O O6B BDP . . . Q 3 -11.056 -50.828 -37.354 0.89 88.88 ? O6B BDP 801 D 1 HETATM 14 H H1 BDP . . . Q 3 -10.468 -54.462 -33.969 0.89 127.1 ? H1 BDP 801 D 1 HETATM 15 H H2 BDP . . . Q 3 -9.134 -55.824 -35.983 0.89 118.63 ? H2 BDP 801 D 1 HETATM 16 H H3 BDP . . . Q 3 -7.527 -53.465 -35.071 0.89 115.49 ? H3 BDP 801 D 1 HETATM 17 H H4 BDP . . . Q 3 -8.992 -53.941 -37.643 0.89 127.78 ? H4 BDP 801 D 1 HETATM 18 H H5 BDP . . . Q 3 -8.973 -51.366 -36.174 0.89 118.14 ? H5 BDP 801 D 1 HETATM 19 H HO2 BDP . . . Q 3 -7.415 -55.519 -34.164 0.89 106.61 ? HO2 BDP 801 D 1 HETATM 20 H HO3 BDP . . . Q 3 -6.109 -54.333 -36.632 0.89 126.3 ? HO3 BDP 801 D 1 HETATM 21 H HO4 BDP . . . Q 3 -6.894 -52.191 -36.934 0.89 142.21 ? HO4 BDP 801 D 1 HETATM 22 H HO1 BDP . . . Q 3 -11.938 -54.118 -35.741 0.89 116.29 ? HO1 BDP 801 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #