data_8GET # _model_server_result.job_id WIZBSst3a0IHE84VuYpc9Q _model_server_result.datetime_utc '2024-11-28 16:20:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8get # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":802}' # _entry.id 8GET # _exptl.entry_id 8GET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.139 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'beta-D-glucopyranuronic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GET _cell.length_a 100.466 _cell.length_b 146.29 _cell.length_c 281.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GET _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,M,N,O,P 1 1 B,H,I,J,K,L 2 1 D,Q,R 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 0 -73.145 140.716 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 Q N N # _chem_comp.formula 'C6 H10 O7' _chem_comp.formula_weight 194.139 _chem_comp.id BDP _chem_comp.mon_nstd_flag . _chem_comp.name 'beta-D-glucopyranuronic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-glucuronic acid;D-glucuronic acid;glucuronic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BDP sing 70 n n C1 O5 BDP sing 71 n n C1 O1 BDP sing 72 n n C1 H1 BDP sing 73 n n C2 C3 BDP sing 74 n n C2 O2 BDP sing 75 n n C2 H2 BDP sing 76 n n C3 C4 BDP sing 77 n n C3 O3 BDP sing 78 n n C3 H3 BDP sing 79 n n C4 C5 BDP sing 80 n n C4 O4 BDP sing 81 n n C4 H4 BDP sing 82 n n C5 C6 BDP sing 83 n n C5 O5 BDP sing 84 n n C5 H5 BDP sing 85 n n C6 O6A BDP doub 86 n n C6 O6B BDP sing 87 n n O2 HO2 BDP sing 88 n n O3 HO3 BDP sing 89 n n O4 HO4 BDP sing 90 n n O1 HO1 BDP sing 91 n n O6B HO6B BDP sing 92 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BDP DGlcpAb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BDP 'b-D-glucopyranuronic acid' 'COMMON NAME' GMML 1 BDP b-D-GlcpA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BDP GlcA 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8GET _atom_sites.fract_transf_matrix[1][1] 0.009954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 801 801 GOL GOL . F 3 BDP A 1 802 802 BDP GLC . G 4 FMN A 1 803 803 FMN FMN . H 2 GOL B 1 801 801 GOL GOL . I 2 GOL B 1 802 802 GOL GOL . J 2 GOL B 1 803 803 GOL GOL . K 3 BDP B 1 804 804 BDP GLC . L 4 FMN B 1 805 805 FMN FMN . M 5 ZG5 C 1 1601 801 ZG5 NOR . N 2 GOL C 1 1602 802 GOL GOL . O 2 GOL C 1 1603 803 GOL GOL . P 4 FMN C 1 1604 804 FMN FMN . Q 3 BDP D 1 801 801 BDP GLC . R 2 GOL D 1 802 802 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BDP . . . F 3 -40.118 -15.075 53.62 0.88 61.67 ? C1 BDP 802 A 1 HETATM 2 C C2 BDP . . . F 3 -39.355 -16.384 53.554 0.88 56.5 ? C2 BDP 802 A 1 HETATM 3 C C3 BDP . . . F 3 -39.395 -17.038 52.234 0.88 54.82 ? C3 BDP 802 A 1 HETATM 4 C C4 BDP . . . F 3 -40.82 -17.291 51.891 0.88 54.93 ? C4 BDP 802 A 1 HETATM 5 C C5 BDP . . . F 3 -41.596 -15.989 51.728 0.88 56.11 ? C5 BDP 802 A 1 HETATM 6 C C6 BDP . . . F 3 -43.053 -16.261 51.985 0.88 65.19 ? C6 BDP 802 A 1 HETATM 7 O O2 BDP . . . F 3 -37.96 -16.054 53.696 0.88 53.38 ? O2 BDP 802 A 1 HETATM 8 O O3 BDP . . . F 3 -38.687 -18.3 52.296 0.88 55.56 ? O3 BDP 802 A 1 HETATM 9 O O4 BDP . . . F 3 -40.882 -18.003 50.657 0.88 69.61 ? O4 BDP 802 A 1 HETATM 10 O O5 BDP . . . F 3 -41.22 -14.876 52.618 0.88 67.17 ? O5 BDP 802 A 1 HETATM 11 O O6A BDP . . . F 3 -43.497 -16.203 53.165 0.88 63.37 ? O6A BDP 802 A 1 HETATM 12 O O1 BDP . . . F 3 -40.543 -14.89 54.91 0.88 56.73 ? O1 BDP 802 A 1 HETATM 13 O O6B BDP . . . F 3 -43.832 -16.546 51.038 0.88 72.64 ? O6B BDP 802 A 1 HETATM 14 H H1 BDP . . . F 3 -39.371 -14.34 53.347 0.88 91.95 ? H1 BDP 802 A 1 HETATM 15 H H2 BDP . . . F 3 -39.718 -17.075 54.305 0.88 85.74 ? H2 BDP 802 A 1 HETATM 16 H H3 BDP . . . F 3 -38.907 -16.432 51.481 0.88 83.72 ? H3 BDP 802 A 1 HETATM 17 H H4 BDP . . . F 3 -41.269 -17.89 52.674 0.88 83.86 ? H4 BDP 802 A 1 HETATM 18 H H5 BDP . . . F 3 -41.398 -15.671 50.712 0.88 85.28 ? H5 BDP 802 A 1 HETATM 19 H HO2 BDP . . . F 3 -37.744 -15.375 53.074 0.88 82 ? HO2 BDP 802 A 1 HETATM 20 H HO3 BDP . . . F 3 -39.079 -18.911 51.695 0.88 84.61 ? HO3 BDP 802 A 1 HETATM 21 H HO4 BDP . . . F 3 -41.746 -18.364 50.557 0.88 101.47 ? HO4 BDP 802 A 1 HETATM 22 H HO1 BDP . . . F 3 -40.104 -15.493 55.491 0.88 86.01 ? HO1 BDP 802 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #