data_8GET # _model_server_result.job_id Ij03LtKLcoyQVzwH-4WL6Q _model_server_result.datetime_utc '2024-11-24 23:43:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8get # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":804}' # _entry.id 8GET # _exptl.entry_id 8GET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.139 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'beta-D-glucopyranuronic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GET _cell.length_a 100.466 _cell.length_b 146.29 _cell.length_c 281.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GET _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,M,N,O,P 1 1 B,H,I,J,K,L 2 1 D,Q,R 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1/2,z+1/2 -1 0 0 0 -1 0 0 0 1 0 -73.145 140.716 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 K N N ? 3 Q N N # _chem_comp.formula 'C6 H10 O7' _chem_comp.formula_weight 194.139 _chem_comp.id BDP _chem_comp.mon_nstd_flag . _chem_comp.name 'beta-D-glucopyranuronic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-glucuronic acid;D-glucuronic acid;glucuronic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BDP sing 70 n n C1 O5 BDP sing 71 n n C1 O1 BDP sing 72 n n C1 H1 BDP sing 73 n n C2 C3 BDP sing 74 n n C2 O2 BDP sing 75 n n C2 H2 BDP sing 76 n n C3 C4 BDP sing 77 n n C3 O3 BDP sing 78 n n C3 H3 BDP sing 79 n n C4 C5 BDP sing 80 n n C4 O4 BDP sing 81 n n C4 H4 BDP sing 82 n n C5 C6 BDP sing 83 n n C5 O5 BDP sing 84 n n C5 H5 BDP sing 85 n n C6 O6A BDP doub 86 n n C6 O6B BDP sing 87 n n O2 HO2 BDP sing 88 n n O3 HO3 BDP sing 89 n n O4 HO4 BDP sing 90 n n O1 HO1 BDP sing 91 n n O6B HO6B BDP sing 92 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BDP DGlcpAb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BDP 'b-D-glucopyranuronic acid' 'COMMON NAME' GMML 1 BDP b-D-GlcpA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BDP GlcA 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8GET _atom_sites.fract_transf_matrix[1][1] 0.009954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 801 801 GOL GOL . F 3 BDP A 1 802 802 BDP GLC . G 4 FMN A 1 803 803 FMN FMN . H 2 GOL B 1 801 801 GOL GOL . I 2 GOL B 1 802 802 GOL GOL . J 2 GOL B 1 803 803 GOL GOL . K 3 BDP B 1 804 804 BDP GLC . L 4 FMN B 1 805 805 FMN FMN . M 5 ZG5 C 1 1601 801 ZG5 NOR . N 2 GOL C 1 1602 802 GOL GOL . O 2 GOL C 1 1603 803 GOL GOL . P 4 FMN C 1 1604 804 FMN FMN . Q 3 BDP D 1 801 801 BDP GLC . R 2 GOL D 1 802 802 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BDP . . . K 3 -37.435 -45.944 82.399 0.7 61.06 ? C1 BDP 804 B 1 HETATM 2 C C2 BDP . . . K 3 -36.167 -45.291 81.875 0.7 55.57 ? C2 BDP 804 B 1 HETATM 3 C C3 BDP . . . K 3 -35.151 -44.957 82.896 0.7 58.14 ? C3 BDP 804 B 1 HETATM 4 C C4 BDP . . . K 3 -35.799 -44.174 83.987 0.7 61.86 ? C4 BDP 804 B 1 HETATM 5 C C5 BDP . . . K 3 -36.847 -45.052 84.658 0.7 59.77 ? C5 BDP 804 B 1 HETATM 6 C C6 BDP . . . K 3 -37.573 -44.354 85.764 0.7 67.63 ? C6 BDP 804 B 1 HETATM 7 O O2 BDP . . . K 3 -35.515 -46.279 81.045 0.7 60.49 ? O2 BDP 804 B 1 HETATM 8 O O3 BDP . . . K 3 -34.131 -44.161 82.246 0.7 60.47 ? O3 BDP 804 B 1 HETATM 9 O O4 BDP . . . K 3 -34.827 -43.825 84.957 0.7 63.89 ? O4 BDP 804 B 1 HETATM 10 O O5 BDP . . . K 3 -37.911 -45.483 83.74 0.7 68.21 ? O5 BDP 804 B 1 HETATM 11 O O6A BDP . . . K 3 -37.33 -44.64 86.966 0.7 55.84 ? O6A BDP 804 B 1 HETATM 12 O O1 BDP . . . K 3 -38.403 -45.809 81.438 0.7 56.87 ? O1 BDP 804 B 1 HETATM 13 O O6B BDP . . . K 3 -38.454 -43.499 85.481 0.7 72.36 ? O6B BDP 804 B 1 HETATM 14 H H1 BDP . . . K 3 -37.159 -46.981 82.539 0.7 95.27 ? H1 BDP 804 B 1 HETATM 15 H H2 BDP . . . K 3 -36.408 -44.375 81.351 0.7 88.69 ? H2 BDP 804 B 1 HETATM 16 H H3 BDP . . . K 3 -34.681 -45.84 83.312 0.7 91.77 ? H3 BDP 804 B 1 HETATM 17 H H4 BDP . . . K 3 -36.231 -43.261 83.598 0.7 96.23 ? H4 BDP 804 B 1 HETATM 18 H H5 BDP . . . K 3 -36.276 -45.882 85.056 0.7 93.73 ? H5 BDP 804 B 1 HETATM 19 H HO2 BDP . . . K 3 -35.508 -47.11 81.498 0.7 94.59 ? HO2 BDP 804 B 1 HETATM 20 H HO3 BDP . . . K 3 -34.275 -44.198 81.314 0.7 94.56 ? HO3 BDP 804 B 1 HETATM 21 H HO4 BDP . . . K 3 -34.913 -42.907 85.152 0.7 98.66 ? HO4 BDP 804 B 1 HETATM 22 H HO1 BDP . . . K 3 -38.698 -44.906 81.395 0.7 90.24 ? HO1 BDP 804 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #