data_8GEV # _model_server_result.job_id u0pjgoqyna31Z6lFxm9jSw _model_server_result.datetime_utc '2024-11-22 15:48:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8GEV # _exptl.entry_id 8GEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.479 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GEV _cell.length_a 37.303 _cell.length_b 38.665 _cell.length_c 93.704 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N3 O2' _chem_comp.formula_weight 377.479 _chem_comp.id ZDK _chem_comp.mon_nstd_flag . _chem_comp.name 1-{[3-(diphenylmethyl)-1,2,4-oxadiazol-5-yl]methyl}-4-(methoxymethyl)piperidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 ZDK doub 376 n y C11 C10 ZDK sing 377 n y C12 C13 ZDK sing 378 n y C10 C09 ZDK doub 379 n y C13 C08 ZDK doub 380 n y C09 C08 ZDK sing 381 n y C08 C07 ZDK sing 382 n n N02 C14 ZDK sing 383 n y N02 C15 ZDK doub 384 n y C07 C04 ZDK sing 385 n n C07 C14 ZDK sing 386 n n C05 C06 ZDK doub 387 n y C05 C04 ZDK sing 388 n y C16 C15 ZDK sing 389 n n C16 N03 ZDK sing 390 n n C06 C01 ZDK sing 391 n y C04 C03 ZDK doub 392 n y C14 N01 ZDK doub 393 n y C15 O01 ZDK sing 394 n y C01 C02 ZDK doub 395 n y C03 C02 ZDK sing 396 n y N01 O01 ZDK sing 397 n y N03 C21 ZDK sing 398 n n N03 C17 ZDK sing 399 n n C21 C20 ZDK sing 400 n n C17 C18 ZDK sing 401 n n C20 C19 ZDK sing 402 n n C18 C19 ZDK sing 403 n n C19 C22 ZDK sing 404 n n C22 O02 ZDK sing 405 n n O02 C23 ZDK sing 406 n n C01 H01 ZDK sing 407 n n C02 H02 ZDK sing 408 n n C03 H05 ZDK sing 409 n n C05 H03 ZDK sing 410 n n C06 H04 ZDK sing 411 n n C07 H11 ZDK sing 412 n n C09 H07 ZDK sing 413 n n C10 H08 ZDK sing 414 n n C11 H09 ZDK sing 415 n n C12 H10 ZDK sing 416 n n C13 H06 ZDK sing 417 n n C16 H13 ZDK sing 418 n n C16 H12 ZDK sing 419 n n C17 H15 ZDK sing 420 n n C17 H14 ZDK sing 421 n n C18 H16 ZDK sing 422 n n C18 H17 ZDK sing 423 n n C19 H ZDK sing 424 n n C20 H19 ZDK sing 425 n n C20 H18 ZDK sing 426 n n C21 H21 ZDK sing 427 n n C21 H20 ZDK sing 428 n n C22 H23 ZDK sing 429 n n C22 H22 ZDK sing 430 n n C23 H25 ZDK sing 431 n n C23 H26 ZDK sing 432 n n C23 H24 ZDK sing 433 n n # _atom_sites.entry_id 8GEV _atom_sites.fract_transf_matrix[1][1] 0.026807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZDK B 1 201 1 ZDK L5 . C 3 HOH B 1 301 29 HOH HOH . C 3 HOH B 2 302 78 HOH HOH . C 3 HOH B 3 303 133 HOH HOH . C 3 HOH B 4 304 124 HOH HOH . C 3 HOH B 5 305 4 HOH HOH . C 3 HOH B 6 306 1 HOH HOH . C 3 HOH B 7 307 95 HOH HOH . C 3 HOH B 8 308 97 HOH HOH . C 3 HOH B 9 309 7 HOH HOH . C 3 HOH B 10 310 33 HOH HOH . C 3 HOH B 11 311 79 HOH HOH . C 3 HOH B 12 312 62 HOH HOH . C 3 HOH B 13 313 9 HOH HOH . C 3 HOH B 14 314 37 HOH HOH . C 3 HOH B 15 315 89 HOH HOH . C 3 HOH B 16 316 25 HOH HOH . C 3 HOH B 17 317 69 HOH HOH . C 3 HOH B 18 318 14 HOH HOH . C 3 HOH B 19 319 16 HOH HOH . C 3 HOH B 20 320 61 HOH HOH . C 3 HOH B 21 321 120 HOH HOH . C 3 HOH B 22 322 24 HOH HOH . C 3 HOH B 23 323 109 HOH HOH . C 3 HOH B 24 324 28 HOH HOH . C 3 HOH B 25 325 85 HOH HOH . C 3 HOH B 26 326 71 HOH HOH . C 3 HOH B 27 327 51 HOH HOH . C 3 HOH B 28 328 26 HOH HOH . C 3 HOH B 29 329 11 HOH HOH . C 3 HOH B 30 330 39 HOH HOH . C 3 HOH B 31 331 100 HOH HOH . C 3 HOH B 32 332 136 HOH HOH . C 3 HOH B 33 333 8 HOH HOH . C 3 HOH B 34 334 45 HOH HOH . C 3 HOH B 35 335 53 HOH HOH . C 3 HOH B 36 336 75 HOH HOH . C 3 HOH B 37 337 70 HOH HOH . C 3 HOH B 38 338 130 HOH HOH . C 3 HOH B 39 339 40 HOH HOH . C 3 HOH B 40 340 42 HOH HOH . C 3 HOH B 41 341 81 HOH HOH . C 3 HOH B 42 342 129 HOH HOH . C 3 HOH B 43 343 93 HOH HOH . C 3 HOH B 44 344 111 HOH HOH . C 3 HOH B 45 345 2 HOH HOH . C 3 HOH B 46 346 84 HOH HOH . C 3 HOH B 47 347 30 HOH HOH . C 3 HOH B 48 348 103 HOH HOH . C 3 HOH B 49 349 134 HOH HOH . C 3 HOH B 50 350 6 HOH HOH . C 3 HOH B 51 351 66 HOH HOH . C 3 HOH B 52 352 5 HOH HOH . C 3 HOH B 53 353 34 HOH HOH . C 3 HOH B 54 354 3 HOH HOH . C 3 HOH B 55 355 112 HOH HOH . C 3 HOH B 56 356 48 HOH HOH . C 3 HOH B 57 357 56 HOH HOH . C 3 HOH B 58 358 23 HOH HOH . C 3 HOH B 59 359 10 HOH HOH . C 3 HOH B 60 360 60 HOH HOH . C 3 HOH B 61 361 55 HOH HOH . C 3 HOH B 62 362 59 HOH HOH . C 3 HOH B 63 363 117 HOH HOH . C 3 HOH B 64 364 83 HOH HOH . C 3 HOH B 65 365 94 HOH HOH . C 3 HOH B 66 366 122 HOH HOH . C 3 HOH B 67 367 67 HOH HOH . C 3 HOH B 68 368 73 HOH HOH . C 3 HOH B 69 369 20 HOH HOH . C 3 HOH B 70 370 54 HOH HOH . C 3 HOH B 71 371 27 HOH HOH . C 3 HOH B 72 372 77 HOH HOH . C 3 HOH B 73 373 68 HOH HOH . C 3 HOH B 74 374 96 HOH HOH . C 3 HOH B 75 375 72 HOH HOH . C 3 HOH B 76 376 114 HOH HOH . C 3 HOH B 77 377 57 HOH HOH . C 3 HOH B 78 378 107 HOH HOH . C 3 HOH B 79 379 50 HOH HOH . C 3 HOH B 80 380 104 HOH HOH . C 3 HOH B 81 381 47 HOH HOH . C 3 HOH B 82 382 17 HOH HOH . C 3 HOH B 83 383 87 HOH HOH . C 3 HOH B 84 384 31 HOH HOH . C 3 HOH B 85 385 19 HOH HOH . C 3 HOH B 86 386 113 HOH HOH . C 3 HOH B 87 387 32 HOH HOH . C 3 HOH B 88 388 21 HOH HOH . C 3 HOH B 89 389 63 HOH HOH . C 3 HOH B 90 390 65 HOH HOH . C 3 HOH B 91 391 12 HOH HOH . C 3 HOH B 92 392 41 HOH HOH . C 3 HOH B 93 393 88 HOH HOH . C 3 HOH B 94 394 44 HOH HOH . C 3 HOH B 95 395 98 HOH HOH . C 3 HOH B 96 396 131 HOH HOH . C 3 HOH B 97 397 126 HOH HOH . C 3 HOH B 98 398 99 HOH HOH . C 3 HOH B 99 399 102 HOH HOH . C 3 HOH B 100 400 115 HOH HOH . C 3 HOH B 101 401 74 HOH HOH . C 3 HOH B 102 402 58 HOH HOH . C 3 HOH B 103 403 108 HOH HOH . C 3 HOH B 104 404 91 HOH HOH . C 3 HOH B 105 405 128 HOH HOH . C 3 HOH B 106 406 105 HOH HOH . C 3 HOH B 107 407 123 HOH HOH . C 3 HOH B 108 408 92 HOH HOH . C 3 HOH B 109 409 86 HOH HOH . C 3 HOH B 110 410 106 HOH HOH . C 3 HOH B 111 411 119 HOH HOH . C 3 HOH B 112 412 35 HOH HOH . C 3 HOH B 113 413 82 HOH HOH . C 3 HOH B 114 414 132 HOH HOH . C 3 HOH B 115 415 15 HOH HOH . C 3 HOH B 116 416 90 HOH HOH . C 3 HOH B 117 417 22 HOH HOH . C 3 HOH B 118 418 121 HOH HOH . C 3 HOH B 119 419 118 HOH HOH . C 3 HOH B 120 420 137 HOH HOH . C 3 HOH B 121 421 36 HOH HOH . C 3 HOH B 122 422 110 HOH HOH . C 3 HOH B 123 423 127 HOH HOH . C 3 HOH B 124 424 46 HOH HOH . C 3 HOH B 125 425 101 HOH HOH . C 3 HOH B 126 426 135 HOH HOH . C 3 HOH B 127 427 18 HOH HOH . C 3 HOH B 128 428 76 HOH HOH . C 3 HOH B 129 429 125 HOH HOH . C 3 HOH B 130 430 139 HOH HOH . C 3 HOH B 131 431 64 HOH HOH . C 3 HOH B 132 432 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 ZDK . . . B 2 15.874 -8.694 -14.349 1 27.78 ? C01 ZDK 201 B 1 HETATM 2 C C02 ZDK . . . B 2 14.541 -8.869 -13.968 1 31.89 ? C02 ZDK 201 B 1 HETATM 3 C C03 ZDK . . . B 2 13.562 -7.958 -14.34 1 31.21 ? C03 ZDK 201 B 1 HETATM 4 C C04 ZDK . . . B 2 13.903 -6.877 -15.116 1 30.44 ? C04 ZDK 201 B 1 HETATM 5 C C05 ZDK . . . B 2 15.223 -6.689 -15.495 1 27.85 ? C05 ZDK 201 B 1 HETATM 6 C C06 ZDK . . . B 2 16.186 -7.608 -15.135 1 25.54 ? C06 ZDK 201 B 1 HETATM 7 C C07 ZDK . . . B 2 12.796 -5.893 -15.496 1 29.43 ? C07 ZDK 201 B 1 HETATM 8 C C08 ZDK . . . B 2 12.499 -5.833 -17.028 1 30.72 ? C08 ZDK 201 B 1 HETATM 9 C C09 ZDK . . . B 2 11.822 -4.733 -17.559 1 30.35 ? C09 ZDK 201 B 1 HETATM 10 C C10 ZDK . . . B 2 11.601 -4.678 -18.927 1 26 ? C10 ZDK 201 B 1 HETATM 11 C C11 ZDK . . . B 2 12.043 -5.699 -19.738 1 31.04 ? C11 ZDK 201 B 1 HETATM 12 C C12 ZDK . . . B 2 12.727 -6.782 -19.224 1 34.81 ? C12 ZDK 201 B 1 HETATM 13 C C13 ZDK . . . B 2 12.945 -6.832 -17.856 1 37.88 ? C13 ZDK 201 B 1 HETATM 14 C C14 ZDK . . . B 2 13.264 -4.425 -15.098 1 38.08 ? C14 ZDK 201 B 1 HETATM 15 C C15 ZDK . . . B 2 14.415 -2.556 -15.05 1 34.32 ? C15 ZDK 201 B 1 HETATM 16 C C16 ZDK . . . B 2 15.539 -1.504 -15.279 1 35.83 ? C16 ZDK 201 B 1 HETATM 17 C C17 ZDK . . . B 2 15.455 -0.518 -13.306 1 39.13 ? C17 ZDK 201 B 1 HETATM 18 C C18 ZDK . . . B 2 16.297 0.125 -12.177 1 32.03 ? C18 ZDK 201 B 1 HETATM 19 C C19 ZDK . . . B 2 17.104 -0.944 -11.453 1 27.53 ? C19 ZDK 201 B 1 HETATM 20 C C20 ZDK . . . B 2 17.765 -1.802 -12.517 1 25.26 ? C20 ZDK 201 B 1 HETATM 21 C C21 ZDK . . . B 2 16.785 -2.225 -13.624 1 32.02 ? C21 ZDK 201 B 1 HETATM 22 C C22 ZDK . . . B 2 18.155 -0.262 -10.576 1 34.28 ? C22 ZDK 201 B 1 HETATM 23 C C23 ZDK . . . B 2 19.267 -0.404 -8.468 1 24.78 ? C23 ZDK 201 B 1 HETATM 24 N N01 ZDK . . . B 2 12.594 -3.624 -14.284 1 43.64 ? N01 ZDK 201 B 1 HETATM 25 N N02 ZDK . . . B 2 14.378 -3.826 -15.581 1 33.58 ? N02 ZDK 201 B 1 HETATM 26 N N03 ZDK . . . B 2 16.196 -1.178 -14.169 1 37.66 ? N03 ZDK 201 B 1 HETATM 27 O O01 ZDK . . . B 2 13.291 -2.415 -14.207 1 48.04 ? O01 ZDK 201 B 1 HETATM 28 O O02 ZDK . . . B 2 18.408 -1.037 -9.415 1 26.52 ? O02 ZDK 201 B 1 HETATM 29 H H01 ZDK . . . B 2 16.643 -9.397 -14.033 1 33.34 ? H01 ZDK 201 B 1 HETATM 30 H H02 ZDK . . . B 2 14.267 -9.731 -13.371 1 38.27 ? H02 ZDK 201 B 1 HETATM 31 H H05 ZDK . . . B 2 12.533 -8.098 -14.019 1 37.45 ? H05 ZDK 201 B 1 HETATM 32 H H03 ZDK . . . B 2 15.5 -5.814 -16.078 1 33.42 ? H03 ZDK 201 B 1 HETATM 33 H H04 ZDK . . . B 2 17.215 -7.471 -15.479 1 30.65 ? H04 ZDK 201 B 1 HETATM 34 H H11 ZDK . . . B 2 11.909 -6.232 -14.98 1 35.32 ? H11 ZDK 201 B 1 HETATM 35 H H07 ZDK . . . B 2 11.478 -3.94 -16.918 1 36.42 ? H07 ZDK 201 B 1 HETATM 36 H H08 ZDK . . . B 2 11.08 -3.829 -19.358 1 31.2 ? H08 ZDK 201 B 1 HETATM 37 H H09 ZDK . . . B 2 11.848 -5.65 -20.806 1 37.25 ? H09 ZDK 201 B 1 HETATM 38 H H10 ZDK . . . B 2 13.083 -7.569 -19.87 1 41.77 ? H10 ZDK 201 B 1 HETATM 39 H H06 ZDK . . . B 2 13.474 -7.672 -17.434 1 45.46 ? H06 ZDK 201 B 1 HETATM 40 H H13 ZDK . . . B 2 15.09 -0.609 -15.687 1 43 ? H13 ZDK 201 B 1 HETATM 41 H H12 ZDK . . . B 2 16.246 -1.909 -15.99 1 43 ? H12 ZDK 201 B 1 HETATM 42 H H15 ZDK . . . B 2 14.737 -1.203 -12.862 1 46.95 ? H15 ZDK 201 B 1 HETATM 43 H H14 ZDK . . . B 2 14.916 0.265 -13.832 1 46.95 ? H14 ZDK 201 B 1 HETATM 44 H H16 ZDK . . . B 2 15.634 0.618 -11.468 1 38.43 ? H16 ZDK 201 B 1 HETATM 45 H H17 ZDK . . . B 2 16.977 0.859 -12.608 1 38.43 ? H17 ZDK 201 B 1 HETATM 46 H H ZDK . . . B 2 16.478 -1.559 -10.818 1 33.03 ? H ZDK 201 B 1 HETATM 47 H H19 ZDK . . . B 2 18.581 -1.238 -12.967 1 30.31 ? H19 ZDK 201 B 1 HETATM 48 H H18 ZDK . . . B 2 18.17 -2.697 -12.045 1 30.31 ? H18 ZDK 201 B 1 HETATM 49 H H21 ZDK . . . B 2 17.328 -2.76 -14.389 1 38.43 ? H21 ZDK 201 B 1 HETATM 50 H H20 ZDK . . . B 2 16.031 -2.87 -13.197 1 38.43 ? H20 ZDK 201 B 1 HETATM 51 H H23 ZDK . . . B 2 17.796 0.712 -10.283 1 41.14 ? H23 ZDK 201 B 1 HETATM 52 H H22 ZDK . . . B 2 19.07 -0.154 -11.138 1 41.14 ? H22 ZDK 201 B 1 HETATM 53 H H25 ZDK . . . B 2 19.5 -1.1 -7.669 1 29.73 ? H25 ZDK 201 B 1 HETATM 54 H H26 ZDK . . . B 2 18.771 0.468 -8.054 1 29.73 ? H26 ZDK 201 B 1 HETATM 55 H H24 ZDK . . . B 2 20.185 -0.098 -8.959 1 29.73 ? H24 ZDK 201 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 55 #