data_8GF5 # _model_server_result.job_id oAZ6souQb6R1vPukxLvsCw _model_server_result.datetime_utc '2025-01-19 19:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gf5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 8GF5 # _exptl.entry_id 8GF5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 906.58 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FACTOR 430' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GF5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GF5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 270 A LYS 270 1_555 A N MHS 271 A MHS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MHS 271 A MHS 271 1_555 A N ALA 272 A ALA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ARG 284 A ARG 284 1_555 A N AGM 285 A AGM 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale4 A C AGM 285 A AGM 285 1_555 A N ALA 286 A ALA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale5 A C GLN 471 A GLN 471 1_555 A N SMC 472 A SMC 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C SMC 472 A SMC 472 1_555 A N GLY 473 A GLY 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 B C LYS 270 B LYS 270 1_555 B N MHS 271 B MHS 271 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C MHS 271 B MHS 271 1_555 B N ALA 272 B ALA 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 B C ARG 284 B ARG 284 1_555 B N AGM 285 B AGM 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C AGM 285 B AGM 285 1_555 B N ALA 286 B ALA 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C GLN 471 B GLN 471 1_555 B N SMC 472 B SMC 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 B C SMC 472 B SMC 472 1_555 B N GLY 473 B GLY 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C42 H51 N6 Ni O13 1' _chem_comp.formula_weight 906.58 _chem_comp.id F43 _chem_comp.mon_nstd_flag . _chem_comp.name 'FACTOR 430' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GF5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 COM A 1 601 1 COM COM . I 6 F43 A 1 602 1 F43 F43 . J 7 TP7 B 1 601 1 TP7 TP7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 NI NI F43 . . . I 6 126.398 141.417 98.278 1 59 ? NI F43 602 A 1 HETATM 2 N NA F43 . . . I 6 127.184 141.96 100.144 1 59 ? NA F43 602 A 1 HETATM 3 C CHA F43 . . . I 6 124.99 142.165 101.105 1 59 ? CHA F43 602 A 1 HETATM 4 C C1A F43 . . . I 6 126.46 142.317 101.115 1 59 ? C1A F43 602 A 1 HETATM 5 C C2A F43 . . . I 6 127.238 143.017 102.205 1 59 ? C2A F43 602 A 1 HETATM 6 C C3A F43 . . . I 6 128.583 143.36 101.518 1 59 ? C3A F43 602 A 1 HETATM 7 C C4A F43 . . . I 6 128.594 142.202 100.542 1 59 ? C4A F43 602 A 1 HETATM 8 C C5A F43 . . . I 6 127.419 142.078 103.414 1 59 ? C5A F43 602 A 1 HETATM 9 C C6A F43 . . . I 6 127.909 142.797 104.652 1 59 ? C6A F43 602 A 1 HETATM 10 O O7A F43 . . . I 6 127.11 143.344 105.416 1 59 ? O7A F43 602 A 1 HETATM 11 N N8A F43 . . . I 6 129.216 142.803 104.856 1 59 ? N8A F43 602 A 1 HETATM 12 C C9A F43 . . . I 6 126.437 144.252 102.66 1 59 ? C9A F43 602 A 1 HETATM 13 C CAA F43 . . . I 6 128.675 144.708 100.804 1 59 ? CAA F43 602 A 1 HETATM 14 C CBA F43 . . . I 6 129.069 145.851 101.737 1 59 ? CBA F43 602 A 1 HETATM 15 C CCA F43 . . . I 6 130.377 146.477 101.377 1 59 ? CCA F43 602 A 1 HETATM 16 O ODA F43 . . . I 6 131.289 146.32 102.301 1 59 ? ODA F43 602 A 1 HETATM 17 O OEA F43 . . . I 6 130.57 147.057 100.336 1 59 ? OEA F43 602 A 1 HETATM 18 N NB F43 . . . I 6 128.317 140.868 97.7 1 59 ? NB F43 602 A 1 HETATM 19 C CHB F43 . . . I 6 129.507 142.219 99.32 1 59 ? CHB F43 602 A 1 HETATM 20 C C1B F43 . . . I 6 129.536 140.886 98.544 1 59 ? C1B F43 602 A 1 HETATM 21 C C2B F43 . . . I 6 130.686 140.608 97.538 1 59 ? C2B F43 602 A 1 HETATM 22 C C3B F43 . . . I 6 130.112 141.009 96.135 1 59 ? C3B F43 602 A 1 HETATM 23 C C4B F43 . . . I 6 128.632 140.816 96.449 1 59 ? C4B F43 602 A 1 HETATM 24 N N5B F43 . . . I 6 129.639 139.744 99.455 1 59 ? N5B F43 602 A 1 HETATM 25 C C6B F43 . . . I 6 130.453 138.766 99.041 1 59 ? C6B F43 602 A 1 HETATM 26 O O7B F43 . . . I 6 130.678 137.73 99.657 1 59 ? O7B F43 602 A 1 HETATM 27 C C8B F43 . . . I 6 130.915 139.095 97.649 1 59 ? C8B F43 602 A 1 HETATM 28 C C9B F43 . . . I 6 132.016 141.296 97.884 1 59 ? C9B F43 602 A 1 HETATM 29 C CAB F43 . . . I 6 130.244 142.474 95.704 1 59 ? CAB F43 602 A 1 HETATM 30 C CBB F43 . . . I 6 129.799 142.719 94.264 1 59 ? CBB F43 602 A 1 HETATM 31 C CCB F43 . . . I 6 130.453 143.917 93.66 1 59 ? CCB F43 602 A 1 HETATM 32 O ODB F43 . . . I 6 131.652 144.091 93.668 1 59 ? ODB F43 602 A 1 HETATM 33 O OEB F43 . . . I 6 129.616 144.679 93.008 1 59 ? OEB F43 602 A 1 HETATM 34 N NC F43 . . . I 6 125.623 141.211 96.391 1 59 ? NC F43 602 A 1 HETATM 35 C CHC F43 . . . I 6 127.714 140.601 95.395 1 59 ? CHC F43 602 A 1 HETATM 36 C C1C F43 . . . I 6 126.379 140.854 95.347 1 59 ? C1C F43 602 A 1 HETATM 37 C C2C F43 . . . I 6 125.601 140.597 94.089 1 59 ? C2C F43 602 A 1 HETATM 38 C C3C F43 . . . I 6 124.224 141.21 94.448 1 59 ? C3C F43 602 A 1 HETATM 39 C C4C F43 . . . I 6 124.368 141.467 95.92 1 59 ? C4C F43 602 A 1 HETATM 40 C C5C F43 . . . I 6 125.567 139.11 93.783 1 59 ? C5C F43 602 A 1 HETATM 41 C C6C F43 . . . I 6 124.5 138.736 92.798 1 59 ? C6C F43 602 A 1 HETATM 42 O O7C F43 . . . I 6 123.348 138.544 93.121 1 59 ? O7C F43 602 A 1 HETATM 43 O O8C F43 . . . I 6 124.88 138.898 91.562 1 59 ? O8C F43 602 A 1 HETATM 44 C C8C F43 . . . I 6 124.18 142.582 93.773 1 59 ? C8C F43 602 A 1 HETATM 45 C C9C F43 . . . I 6 123.88 142.5 92.278 1 59 ? C9C F43 602 A 1 HETATM 46 C CAC F43 . . . I 6 123.784 143.839 91.617 1 59 ? CAC F43 602 A 1 HETATM 47 O OBC F43 . . . I 6 124.113 144.824 92.412 1 59 ? OBC F43 602 A 1 HETATM 48 O OCC F43 . . . I 6 123.58 143.976 90.433 1 59 ? OCC F43 602 A 1 HETATM 49 N ND F43 . . . I 6 124.633 142.333 98.702 1 59 ? ND F43 602 A 1 HETATM 50 C CHD F43 . . . I 6 123.326 141.93 96.723 1 59 ? CHD F43 602 A 1 HETATM 51 C C5D F43 . . . I 6 121.253 143.429 98.169 1 59 ? C5D F43 602 A 1 HETATM 52 C C6D F43 . . . I 6 121.112 143.109 96.687 1 59 ? C6D F43 602 A 1 HETATM 53 C C7D F43 . . . I 6 121.956 141.953 96.237 1 59 ? C7D F43 602 A 1 HETATM 54 O O8D F43 . . . I 6 121.503 141.107 95.478 1 59 ? O8D F43 602 A 1 HETATM 55 C C9D F43 . . . I 6 122.856 144.597 100.893 1 59 ? C9D F43 602 A 1 HETATM 56 C CAD F43 . . . I 6 121.522 144.75 101.56 1 59 ? CAD F43 602 A 1 HETATM 57 O OBD F43 . . . I 6 121.407 145.162 102.693 1 59 ? OBD F43 602 A 1 HETATM 58 O OCD F43 . . . I 6 120.567 144.134 100.921 1 59 ? OCD F43 602 A 1 HETATM 59 C C1D F43 . . . I 6 123.529 142.499 97.985 1 59 ? C1D F43 602 A 1 HETATM 60 C C2D F43 . . . I 6 122.713 143.627 98.578 1 59 ? C2D F43 602 A 1 HETATM 61 C C3D F43 . . . I 6 122.969 143.328 100.058 1 59 ? C3D F43 602 A 1 HETATM 62 C C4D F43 . . . I 6 124.464 143.037 99.967 1 59 ? C4D F43 602 A 1 HETATM 63 H H4A F43 . . . I 6 128.865 141.432 101.064 1 59 ? H4A F43 602 A 1 HETATM 64 H HHA1 F43 . . . I 6 124.765 141.238 100.93 1 59 ? HHA1 F43 602 A 1 HETATM 65 H HHA2 F43 . . . I 6 124.594 142.43 101.949 1 59 ? HHA2 F43 602 A 1 HETATM 66 H H4D F43 . . . I 6 124.957 143.872 99.945 1 59 ? H4D F43 602 A 1 HETATM 67 H H3A F43 . . . I 6 129.314 143.293 102.153 1 59 ? H3A F43 602 A 1 HETATM 68 H H5A1 F43 . . . I 6 126.569 141.657 103.615 1 59 ? H5A1 F43 602 A 1 HETATM 69 H H5A2 F43 . . . I 6 128.068 141.395 103.185 1 59 ? H5A2 F43 602 A 1 HETATM 70 H H9A1 F43 . . . I 6 127.002 144.868 103.146 1 59 ? H9A1 F43 602 A 1 HETATM 71 H H9A2 F43 . . . I 6 126.063 144.7 101.885 1 59 ? H9A2 F43 602 A 1 HETATM 72 H H9A3 F43 . . . I 6 125.715 143.968 103.241 1 59 ? H9A3 F43 602 A 1 HETATM 73 H HAA1 F43 . . . I 6 129.366 144.689 100.129 1 59 ? HAA1 F43 602 A 1 HETATM 74 H HAA2 F43 . . . I 6 127.824 144.913 100.387 1 59 ? HAA2 F43 602 A 1 HETATM 75 H HHB1 F43 . . . I 6 129.195 142.907 98.712 1 59 ? HHB1 F43 602 A 1 HETATM 76 H HHB2 F43 . . . I 6 130.392 142.448 99.63 1 59 ? HHB2 F43 602 A 1 HETATM 77 H H8A1 F43 . . . I 6 129.542 143.199 105.546 1 59 ? H8A1 F43 602 A 1 HETATM 78 H H8A2 F43 . . . I 6 129.74 142.41 104.298 1 59 ? H8A2 F43 602 A 1 HETATM 79 H HBA1 F43 . . . I 6 128.38 146.53 101.725 1 59 ? HBA1 F43 602 A 1 HETATM 80 H HBA2 F43 . . . I 6 129.148 145.496 102.636 1 59 ? HBA2 F43 602 A 1 HETATM 81 H HDA F43 . . . I 6 131.278 146.988 102.827 1 59 ? HDA F43 602 A 1 HETATM 82 H H5B F43 . . . I 6 129.127 139.651 100.139 1 59 ? H5B F43 602 A 1 HETATM 83 H H3B F43 . . . I 6 130.435 140.417 95.439 1 59 ? H3B F43 602 A 1 HETATM 84 H H8B1 F43 . . . I 6 130.397 138.615 96.986 1 59 ? H8B1 F43 602 A 1 HETATM 85 H H8B2 F43 . . . I 6 131.853 138.875 97.537 1 59 ? H8B2 F43 602 A 1 HETATM 86 H H9B1 F43 . . . I 6 132.694 141.038 97.243 1 59 ? H9B1 F43 602 A 1 HETATM 87 H H9B2 F43 . . . I 6 131.911 142.259 97.877 1 59 ? H9B2 F43 602 A 1 HETATM 88 H H9B3 F43 . . . I 6 132.296 141.014 98.769 1 59 ? H9B3 F43 602 A 1 HETATM 89 H HAB1 F43 . . . I 6 129.703 143.022 96.293 1 59 ? HAB1 F43 602 A 1 HETATM 90 H HAB2 F43 . . . I 6 131.173 142.743 95.765 1 59 ? HAB2 F43 602 A 1 HETATM 91 H HHC F43 . . . I 6 128.093 140.329 94.591 1 59 ? HHC F43 602 A 1 HETATM 92 H HBB1 F43 . . . I 6 130.025 141.94 93.732 1 59 ? HBB1 F43 602 A 1 HETATM 93 H HBB2 F43 . . . I 6 128.838 142.849 94.247 1 59 ? HBB2 F43 602 A 1 HETATM 94 H HEB F43 . . . I 6 128.994 144.933 93.53 1 59 ? HEB F43 602 A 1 HETATM 95 H H2C F43 . . . I 6 125.993 141.068 93.337 1 59 ? H2C F43 602 A 1 HETATM 96 H H3C F43 . . . I 6 123.467 140.646 94.224 1 59 ? H3C F43 602 A 1 HETATM 97 H H5C1 F43 . . . I 6 126.427 138.866 93.408 1 59 ? H5C1 F43 602 A 1 HETATM 98 H H5C2 F43 . . . I 6 125.431 138.613 94.604 1 59 ? H5C2 F43 602 A 1 HETATM 99 H H8C1 F43 . . . I 6 123.493 143.122 94.193 1 59 ? H8C1 F43 602 A 1 HETATM 100 H H8C2 F43 . . . I 6 125.04 143.013 93.895 1 59 ? H8C2 F43 602 A 1 HETATM 101 H H8C F43 . . . I 6 124.729 138.187 91.124 1 59 ? H8C F43 602 A 1 HETATM 102 H H9C1 F43 . . . I 6 124.592 142.001 91.848 1 59 ? H9C1 F43 602 A 1 HETATM 103 H H9C2 F43 . . . I 6 123.038 142.036 92.157 1 59 ? H9C2 F43 602 A 1 HETATM 104 H HBC F43 . . . I 6 123.867 145.561 92.067 1 59 ? HBC F43 602 A 1 HETATM 105 H H5D1 F43 . . . I 6 120.758 144.24 98.364 1 59 ? H5D1 F43 602 A 1 HETATM 106 H H5D2 F43 . . . I 6 120.875 142.699 98.685 1 59 ? H5D2 F43 602 A 1 HETATM 107 H H6D1 F43 . . . I 6 120.182 142.898 96.509 1 59 ? H6D1 F43 602 A 1 HETATM 108 H H6D2 F43 . . . I 6 121.373 143.89 96.18 1 59 ? H6D2 F43 602 A 1 HETATM 109 H H2D F43 . . . I 6 123.036 144.497 98.299 1 59 ? H2D F43 602 A 1 HETATM 110 H H9D1 F43 . . . I 6 123.007 145.374 100.333 1 59 ? H9D1 F43 602 A 1 HETATM 111 H H9D2 F43 . . . I 6 123.531 144.565 101.589 1 59 ? H9D2 F43 602 A 1 HETATM 112 H H3D F43 . . . I 6 122.443 142.592 100.408 1 59 ? H3D F43 602 A 1 HETATM 113 H HCD F43 . . . I 6 120.361 143.421 101.336 1 59 ? HCD F43 602 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 456 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 113 #