data_8GF9
#
_model_server_result.job_id            0Qsc2u9cLXLoSbrW0HyXuA 
_model_server_result.datetime_utc      '2024-11-15 13:22:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gf9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":1212}' 
#
_entry.id    8GF9 
#
_exptl.entry_id    8GF9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GF9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 389 A CYS 387 1_555 A SG CYS 393 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 389 B CYS 387 1_555 B SG CYS 393 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 389 C CYS 387 1_555 C SG CYS 393 C CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 D SG CYS 389 D CYS 387 1_555 D SG CYS 393 D CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc1 A O GLY 646 A GLY 644 1_555 O NA NA . A NA 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc2 O NA NA . A NA 1211 1_555 B O GLY 646 B GLY 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc3 O NA NA . A NA 1211 1_555 C O GLY 646 C GLY 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc4 O NA NA . A NA 1211 1_555 D O GLY 646 D GLY 644 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc5 P NA NA . A NA 1212 1_555 UA O HOH . A HOH 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? 
metalc ? metalc6 P NA NA . A NA 1212 1_555 VA O HOH . B HOH 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? 
metalc ? metalc7 P NA NA . A NA 1212 1_555 WA O HOH . C HOH 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? 
metalc ? metalc8 P NA NA . A NA 1212 1_555 XA O HOH . D HOH 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8GF9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 POV A 1 1201 902 POV POV . 
F 3 8IJ A 1 1202 903 8IJ YBG . 
G 2 POV A 1 1203 904 POV POV . 
H 2 POV A 1 1204 906 POV POV . 
I 2 POV A 1 1205 907 POV POV . 
J 2 POV A 1 1206 908 POV POV . 
K 2 POV A 1 1207 909 POV POV . 
L 2 POV A 1 1208 910 POV POV . 
M 2 POV A 1 1209 905 POV POV . 
N 2 POV A 1 1210 901 POV POV . 
O 4 NA A 1 1211 1 NA NA . 
P 4 NA A 1 1212 2 NA NA . 
Q 2 POV B 1 1201 901 POV POV . 
R 2 POV B 1 1202 902 POV POV . 
S 3 8IJ B 1 1203 903 8IJ YBG . 
T 2 POV B 1 1204 904 POV POV . 
U 2 POV B 1 1205 906 POV POV . 
V 2 POV B 1 1206 907 POV POV . 
W 2 POV B 1 1207 908 POV POV . 
X 2 POV B 1 1208 909 POV POV . 
Y 2 POV B 1 1209 910 POV POV . 
Z 2 POV B 1 1210 905 POV POV . 
AA 2 POV C 1 1201 901 POV POV . 
BA 2 POV C 1 1202 902 POV POV . 
CA 3 8IJ C 1 1203 903 8IJ YBG . 
DA 2 POV C 1 1204 904 POV POV . 
EA 2 POV C 1 1205 906 POV POV . 
FA 2 POV C 1 1206 907 POV POV . 
GA 2 POV C 1 1207 908 POV POV . 
HA 2 POV C 1 1208 909 POV POV . 
IA 2 POV C 1 1209 910 POV POV . 
JA 2 POV C 1 1210 905 POV POV . 
KA 2 POV D 1 1201 905 POV POV . 
LA 2 POV D 1 1202 901 POV POV . 
MA 2 POV D 1 1203 902 POV POV . 
NA 3 8IJ D 1 1204 903 8IJ YBG . 
OA 2 POV D 1 1205 904 POV POV . 
PA 2 POV D 1 1206 906 POV POV . 
QA 2 POV D 1 1207 907 POV POV . 
RA 2 POV D 1 1208 908 POV POV . 
SA 2 POV D 1 1209 909 POV POV . 
TA 2 POV D 1 1210 910 POV POV . 
UA 5 HOH A 1 1301 823 HOH HOH . 
UA 5 HOH A 2 1302 812 HOH HOH . 
UA 5 HOH A 3 1303 813 HOH HOH . 
UA 5 HOH A 4 1304 802 HOH HOH . 
UA 5 HOH A 5 1305 805 HOH HOH . 
UA 5 HOH A 6 1306 808 HOH HOH . 
UA 5 HOH A 7 1307 801 HOH HOH . 
UA 5 HOH A 8 1308 810 HOH HOH . 
UA 5 HOH A 9 1309 806 HOH HOH . 
UA 5 HOH A 10 1310 824 HOH HOH . 
UA 5 HOH A 11 1311 819 HOH HOH . 
UA 5 HOH A 12 1312 804 HOH HOH . 
UA 5 HOH A 13 1313 826 HOH HOH . 
UA 5 HOH A 14 1314 809 HOH HOH . 
UA 5 HOH A 15 1315 821 HOH HOH . 
UA 5 HOH A 16 1316 825 HOH HOH . 
UA 5 HOH A 17 1317 818 HOH HOH . 
UA 5 HOH A 18 1318 820 HOH HOH . 
UA 5 HOH A 19 1319 814 HOH HOH . 
UA 5 HOH A 20 1320 807 HOH HOH . 
UA 5 HOH A 21 1321 815 HOH HOH . 
UA 5 HOH A 22 1322 803 HOH HOH . 
UA 5 HOH A 23 1323 822 HOH HOH . 
VA 5 HOH B 1 1301 823 HOH HOH . 
VA 5 HOH B 2 1302 812 HOH HOH . 
VA 5 HOH B 3 1303 813 HOH HOH . 
VA 5 HOH B 4 1304 802 HOH HOH . 
VA 5 HOH B 5 1305 805 HOH HOH . 
VA 5 HOH B 6 1306 801 HOH HOH . 
VA 5 HOH B 7 1307 808 HOH HOH . 
VA 5 HOH B 8 1308 810 HOH HOH . 
VA 5 HOH B 9 1309 806 HOH HOH . 
VA 5 HOH B 10 1310 824 HOH HOH . 
VA 5 HOH B 11 1311 819 HOH HOH . 
VA 5 HOH B 12 1312 804 HOH HOH . 
VA 5 HOH B 13 1313 826 HOH HOH . 
VA 5 HOH B 14 1314 809 HOH HOH . 
VA 5 HOH B 15 1315 821 HOH HOH . 
VA 5 HOH B 16 1316 825 HOH HOH . 
VA 5 HOH B 17 1317 818 HOH HOH . 
VA 5 HOH B 18 1318 820 HOH HOH . 
VA 5 HOH B 19 1319 814 HOH HOH . 
VA 5 HOH B 20 1320 807 HOH HOH . 
VA 5 HOH B 21 1321 815 HOH HOH . 
VA 5 HOH B 22 1322 803 HOH HOH . 
VA 5 HOH B 23 1323 822 HOH HOH . 
WA 5 HOH C 1 1301 823 HOH HOH . 
WA 5 HOH C 2 1302 812 HOH HOH . 
WA 5 HOH C 3 1303 813 HOH HOH . 
WA 5 HOH C 4 1304 802 HOH HOH . 
WA 5 HOH C 5 1305 805 HOH HOH . 
WA 5 HOH C 6 1306 808 HOH HOH . 
WA 5 HOH C 7 1307 801 HOH HOH . 
WA 5 HOH C 8 1308 810 HOH HOH . 
WA 5 HOH C 9 1309 806 HOH HOH . 
WA 5 HOH C 10 1310 824 HOH HOH . 
WA 5 HOH C 11 1311 819 HOH HOH . 
WA 5 HOH C 12 1312 826 HOH HOH . 
WA 5 HOH C 13 1313 804 HOH HOH . 
WA 5 HOH C 14 1314 809 HOH HOH . 
WA 5 HOH C 15 1315 821 HOH HOH . 
WA 5 HOH C 16 1316 825 HOH HOH . 
WA 5 HOH C 17 1317 818 HOH HOH . 
WA 5 HOH C 18 1318 820 HOH HOH . 
WA 5 HOH C 19 1319 814 HOH HOH . 
WA 5 HOH C 20 1320 807 HOH HOH . 
WA 5 HOH C 21 1321 815 HOH HOH . 
WA 5 HOH C 22 1322 803 HOH HOH . 
WA 5 HOH C 23 1323 822 HOH HOH . 
XA 5 HOH D 1 1301 812 HOH HOH . 
XA 5 HOH D 2 1302 823 HOH HOH . 
XA 5 HOH D 3 1303 813 HOH HOH . 
XA 5 HOH D 4 1304 802 HOH HOH . 
XA 5 HOH D 5 1305 805 HOH HOH . 
XA 5 HOH D 6 1306 801 HOH HOH . 
XA 5 HOH D 7 1307 808 HOH HOH . 
XA 5 HOH D 8 1308 810 HOH HOH . 
XA 5 HOH D 9 1309 806 HOH HOH . 
XA 5 HOH D 10 1310 824 HOH HOH . 
XA 5 HOH D 11 1311 819 HOH HOH . 
XA 5 HOH D 12 1312 809 HOH HOH . 
XA 5 HOH D 13 1313 826 HOH HOH . 
XA 5 HOH D 14 1314 804 HOH HOH . 
XA 5 HOH D 15 1315 821 HOH HOH . 
XA 5 HOH D 16 1316 825 HOH HOH . 
XA 5 HOH D 17 1317 818 HOH HOH . 
XA 5 HOH D 18 1318 820 HOH HOH . 
XA 5 HOH D 19 1319 814 HOH HOH . 
XA 5 HOH D 20 1320 807 HOH HOH . 
XA 5 HOH D 21 1321 815 HOH HOH . 
XA 5 HOH D 22 1322 803 HOH HOH . 
XA 5 HOH D 23 1323 822 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         P 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               100.48 
_atom_site.Cartn_y               100.48 
_atom_site.Cartn_z               80.928 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.53 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1212 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#