data_8GFB # _model_server_result.job_id 1bKEgqnPGo9aEFtDaDbNBQ _model_server_result.datetime_utc '2025-07-06 06:41:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8GFB # _exptl.entry_id 8GFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.35 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-2-deoxy-6-O-methyl-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFB _cell.length_a 176.755 _cell.length_b 176.755 _cell.length_c 176.755 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.163 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H25 N O8' _chem_comp.formula_weight 335.35 _chem_comp.id ZG9 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-2-deoxy-6-O-methyl-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ZG9 sing 405 n n C2 O1 ZG9 sing 406 n n C2 C3 ZG9 sing 407 n n O6 C11 ZG9 doub 408 n n C14 O8 ZG9 sing 409 n n C14 C3 ZG9 sing 410 n n C14 C13 ZG9 sing 411 n n O2 C3 ZG9 sing 412 n n O2 C4 ZG9 sing 413 n n O7 C13 ZG9 sing 414 n n C10 C13 ZG9 sing 415 n n C10 C4 ZG9 sing 416 n n C10 N1 ZG9 sing 417 n n O3 C4 ZG9 sing 418 n n O3 C5 ZG9 sing 419 n n C11 N1 ZG9 sing 420 n n C11 C12 ZG9 sing 421 n n C7 O4 ZG9 sing 422 n n C7 C6 ZG9 sing 423 n n C5 C6 ZG9 sing 424 n n O4 C8 ZG9 sing 425 n n C6 O5 ZG9 sing 426 n n C8 C9 ZG9 sing 427 n n O5 C9 ZG9 sing 428 n n C1 H1 ZG9 sing 429 n n C1 H2 ZG9 sing 430 n n C1 H3 ZG9 sing 431 n n C2 H4 ZG9 sing 432 n n C2 H5 ZG9 sing 433 n n C3 H6 ZG9 sing 434 n n C4 H7 ZG9 sing 435 n n C5 H8 ZG9 sing 436 n n C5 H9 ZG9 sing 437 n n C6 H10 ZG9 sing 438 n n C7 H11 ZG9 sing 439 n n C7 H12 ZG9 sing 440 n n C8 H13 ZG9 sing 441 n n C8 H14 ZG9 sing 442 n n C9 H15 ZG9 sing 443 n n C9 H16 ZG9 sing 444 n n C10 H17 ZG9 sing 445 n n N1 H18 ZG9 sing 446 n n C12 H19 ZG9 sing 447 n n C12 H20 ZG9 sing 448 n n C12 H21 ZG9 sing 449 n n C13 H22 ZG9 sing 450 n n O7 H23 ZG9 sing 451 n n C14 H24 ZG9 sing 452 n n O8 H25 ZG9 sing 453 n n # _atom_sites.entry_id 8GFB _atom_sites.fract_transf_matrix[1][1] 0.005658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZG9 A 1 601 1 ZG9 UNL . C 3 CIT A 1 602 2 CIT CIT . D 4 DMS A 1 603 6 DMS DMS . E 4 DMS A 1 604 7 DMS DMS . F 4 DMS A 1 605 8 DMS DMS . G 5 HOH A 1 701 225 HOH HOH . G 5 HOH A 2 702 239 HOH HOH . G 5 HOH A 3 703 250 HOH HOH . G 5 HOH A 4 704 125 HOH HOH . G 5 HOH A 5 705 83 HOH HOH . G 5 HOH A 6 706 206 HOH HOH . G 5 HOH A 7 707 110 HOH HOH . G 5 HOH A 8 708 80 HOH HOH . G 5 HOH A 9 709 1 HOH HOH . G 5 HOH A 10 710 230 HOH HOH . G 5 HOH A 11 711 92 HOH HOH . G 5 HOH A 12 712 15 HOH HOH . G 5 HOH A 13 713 245 HOH HOH . G 5 HOH A 14 714 219 HOH HOH . G 5 HOH A 15 715 191 HOH HOH . G 5 HOH A 16 716 93 HOH HOH . G 5 HOH A 17 717 10 HOH HOH . G 5 HOH A 18 718 242 HOH HOH . G 5 HOH A 19 719 197 HOH HOH . G 5 HOH A 20 720 47 HOH HOH . G 5 HOH A 21 721 207 HOH HOH . G 5 HOH A 22 722 50 HOH HOH . G 5 HOH A 23 723 17 HOH HOH . G 5 HOH A 24 724 25 HOH HOH . G 5 HOH A 25 725 236 HOH HOH . G 5 HOH A 26 726 210 HOH HOH . G 5 HOH A 27 727 40 HOH HOH . G 5 HOH A 28 728 244 HOH HOH . G 5 HOH A 29 729 181 HOH HOH . G 5 HOH A 30 730 190 HOH HOH . G 5 HOH A 31 731 14 HOH HOH . G 5 HOH A 32 732 238 HOH HOH . G 5 HOH A 33 733 111 HOH HOH . G 5 HOH A 34 734 105 HOH HOH . G 5 HOH A 35 735 221 HOH HOH . G 5 HOH A 36 736 64 HOH HOH . G 5 HOH A 37 737 208 HOH HOH . G 5 HOH A 38 738 106 HOH HOH . G 5 HOH A 39 739 79 HOH HOH . G 5 HOH A 40 740 29 HOH HOH . G 5 HOH A 41 741 130 HOH HOH . G 5 HOH A 42 742 27 HOH HOH . G 5 HOH A 43 743 16 HOH HOH . G 5 HOH A 44 744 28 HOH HOH . G 5 HOH A 45 745 32 HOH HOH . G 5 HOH A 46 746 54 HOH HOH . G 5 HOH A 47 747 48 HOH HOH . G 5 HOH A 48 748 214 HOH HOH . G 5 HOH A 49 749 128 HOH HOH . G 5 HOH A 50 750 237 HOH HOH . G 5 HOH A 51 751 241 HOH HOH . G 5 HOH A 52 752 41 HOH HOH . G 5 HOH A 53 753 3 HOH HOH . G 5 HOH A 54 754 23 HOH HOH . G 5 HOH A 55 755 8 HOH HOH . G 5 HOH A 56 756 38 HOH HOH . G 5 HOH A 57 757 65 HOH HOH . G 5 HOH A 58 758 139 HOH HOH . G 5 HOH A 59 759 87 HOH HOH . G 5 HOH A 60 760 99 HOH HOH . G 5 HOH A 61 761 121 HOH HOH . G 5 HOH A 62 762 46 HOH HOH . G 5 HOH A 63 763 120 HOH HOH . G 5 HOH A 64 764 90 HOH HOH . G 5 HOH A 65 765 61 HOH HOH . G 5 HOH A 66 766 49 HOH HOH . G 5 HOH A 67 767 102 HOH HOH . G 5 HOH A 68 768 75 HOH HOH . G 5 HOH A 69 769 33 HOH HOH . G 5 HOH A 70 770 6 HOH HOH . G 5 HOH A 71 771 13 HOH HOH . G 5 HOH A 72 772 175 HOH HOH . G 5 HOH A 73 773 166 HOH HOH . G 5 HOH A 74 774 88 HOH HOH . G 5 HOH A 75 775 118 HOH HOH . G 5 HOH A 76 776 60 HOH HOH . G 5 HOH A 77 777 77 HOH HOH . G 5 HOH A 78 778 142 HOH HOH . G 5 HOH A 79 779 145 HOH HOH . G 5 HOH A 80 780 51 HOH HOH . G 5 HOH A 81 781 216 HOH HOH . G 5 HOH A 82 782 116 HOH HOH . G 5 HOH A 83 783 114 HOH HOH . G 5 HOH A 84 784 86 HOH HOH . G 5 HOH A 85 785 73 HOH HOH . G 5 HOH A 86 786 178 HOH HOH . G 5 HOH A 87 787 82 HOH HOH . G 5 HOH A 88 788 160 HOH HOH . G 5 HOH A 89 789 127 HOH HOH . G 5 HOH A 90 790 58 HOH HOH . G 5 HOH A 91 791 163 HOH HOH . G 5 HOH A 92 792 209 HOH HOH . G 5 HOH A 93 793 21 HOH HOH . G 5 HOH A 94 794 232 HOH HOH . G 5 HOH A 95 795 182 HOH HOH . G 5 HOH A 96 796 70 HOH HOH . G 5 HOH A 97 797 76 HOH HOH . G 5 HOH A 98 798 161 HOH HOH . G 5 HOH A 99 799 152 HOH HOH . G 5 HOH A 100 800 12 HOH HOH . G 5 HOH A 101 801 135 HOH HOH . G 5 HOH A 102 802 228 HOH HOH . G 5 HOH A 103 803 227 HOH HOH . G 5 HOH A 104 804 67 HOH HOH . G 5 HOH A 105 805 20 HOH HOH . G 5 HOH A 106 806 44 HOH HOH . G 5 HOH A 107 807 231 HOH HOH . G 5 HOH A 108 808 235 HOH HOH . G 5 HOH A 109 809 95 HOH HOH . G 5 HOH A 110 810 176 HOH HOH . G 5 HOH A 111 811 37 HOH HOH . G 5 HOH A 112 812 34 HOH HOH . G 5 HOH A 113 813 218 HOH HOH . G 5 HOH A 114 814 146 HOH HOH . G 5 HOH A 115 815 129 HOH HOH . G 5 HOH A 116 816 43 HOH HOH . G 5 HOH A 117 817 234 HOH HOH . G 5 HOH A 118 818 11 HOH HOH . G 5 HOH A 119 819 42 HOH HOH . G 5 HOH A 120 820 7 HOH HOH . G 5 HOH A 121 821 18 HOH HOH . G 5 HOH A 122 822 52 HOH HOH . G 5 HOH A 123 823 212 HOH HOH . G 5 HOH A 124 824 136 HOH HOH . G 5 HOH A 125 825 39 HOH HOH . G 5 HOH A 126 826 63 HOH HOH . G 5 HOH A 127 827 150 HOH HOH . G 5 HOH A 128 828 137 HOH HOH . G 5 HOH A 129 829 71 HOH HOH . G 5 HOH A 130 830 84 HOH HOH . G 5 HOH A 131 831 126 HOH HOH . G 5 HOH A 132 832 155 HOH HOH . G 5 HOH A 133 833 30 HOH HOH . G 5 HOH A 134 834 2 HOH HOH . G 5 HOH A 135 835 179 HOH HOH . G 5 HOH A 136 836 248 HOH HOH . G 5 HOH A 137 837 198 HOH HOH . G 5 HOH A 138 838 213 HOH HOH . G 5 HOH A 139 839 122 HOH HOH . G 5 HOH A 140 840 183 HOH HOH . G 5 HOH A 141 841 133 HOH HOH . G 5 HOH A 142 842 144 HOH HOH . G 5 HOH A 143 843 31 HOH HOH . G 5 HOH A 144 844 193 HOH HOH . G 5 HOH A 145 845 98 HOH HOH . G 5 HOH A 146 846 81 HOH HOH . G 5 HOH A 147 847 124 HOH HOH . G 5 HOH A 148 848 233 HOH HOH . G 5 HOH A 149 849 5 HOH HOH . G 5 HOH A 150 850 107 HOH HOH . G 5 HOH A 151 851 141 HOH HOH . G 5 HOH A 152 852 112 HOH HOH . G 5 HOH A 153 853 24 HOH HOH . G 5 HOH A 154 854 162 HOH HOH . G 5 HOH A 155 855 68 HOH HOH . G 5 HOH A 156 856 94 HOH HOH . G 5 HOH A 157 857 62 HOH HOH . G 5 HOH A 158 858 9 HOH HOH . G 5 HOH A 159 859 74 HOH HOH . G 5 HOH A 160 860 100 HOH HOH . G 5 HOH A 161 861 4 HOH HOH . G 5 HOH A 162 862 35 HOH HOH . G 5 HOH A 163 863 19 HOH HOH . G 5 HOH A 164 864 53 HOH HOH . G 5 HOH A 165 865 132 HOH HOH . G 5 HOH A 166 866 138 HOH HOH . G 5 HOH A 167 867 154 HOH HOH . G 5 HOH A 168 868 140 HOH HOH . G 5 HOH A 169 869 45 HOH HOH . G 5 HOH A 170 870 119 HOH HOH . G 5 HOH A 171 871 56 HOH HOH . G 5 HOH A 172 872 200 HOH HOH . G 5 HOH A 173 873 205 HOH HOH . G 5 HOH A 174 874 169 HOH HOH . G 5 HOH A 175 875 229 HOH HOH . G 5 HOH A 176 876 72 HOH HOH . G 5 HOH A 177 877 36 HOH HOH . G 5 HOH A 178 878 115 HOH HOH . G 5 HOH A 179 879 243 HOH HOH . G 5 HOH A 180 880 211 HOH HOH . G 5 HOH A 181 881 148 HOH HOH . G 5 HOH A 182 882 108 HOH HOH . G 5 HOH A 183 883 97 HOH HOH . G 5 HOH A 184 884 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZG9 . . . B 2 -15.75 -37.622 -65.274 1 48.46 ? C1 ZG9 601 A 1 HETATM 2 O O1 ZG9 . . . B 2 -15.993 -36.663 -64.224 1 53.68 ? O1 ZG9 601 A 1 HETATM 3 C C2 ZG9 . . . B 2 -16.767 -35.53 -64.614 1 49.91 ? C2 ZG9 601 A 1 HETATM 4 C C3 ZG9 . . . B 2 -16.479 -34.364 -63.705 1 48.66 ? C3 ZG9 601 A 1 HETATM 5 O O2 ZG9 . . . B 2 -15.088 -34.079 -63.888 1 47.34 ? O2 ZG9 601 A 1 HETATM 6 C C4 ZG9 . . . B 2 -14.623 -33.035 -63.041 1 44.53 ? C4 ZG9 601 A 1 HETATM 7 O O3 ZG9 . . . B 2 -13.273 -32.961 -63.352 1 51.39 ? O3 ZG9 601 A 1 HETATM 8 C C5 ZG9 . . . B 2 -12.36 -33.691 -62.486 1 60.6 ? C5 ZG9 601 A 1 HETATM 9 C C6 ZG9 . . . B 2 -11.423 -32.645 -61.96 1 71.35 ? C6 ZG9 601 A 1 HETATM 10 C C7 ZG9 . . . B 2 -10.059 -32.499 -62.488 1 79.06 ? C7 ZG9 601 A 1 HETATM 11 O O4 ZG9 . . . B 2 -9.534 -31.251 -62.036 1 94.2 ? O4 ZG9 601 A 1 HETATM 12 C C8 ZG9 . . . B 2 -9.544 -31.168 -60.598 1 83.98 ? C8 ZG9 601 A 1 HETATM 13 C C9 ZG9 . . . B 2 -10.882 -31.495 -60.016 1 72.56 ? C9 ZG9 601 A 1 HETATM 14 O O5 ZG9 . . . B 2 -11.385 -32.72 -60.549 1 85.15 ? O5 ZG9 601 A 1 HETATM 15 C C10 ZG9 . . . B 2 -15.333 -31.696 -63.354 1 45.3 ? C10 ZG9 601 A 1 HETATM 16 N N1 ZG9 . . . B 2 -14.896 -30.554 -62.554 1 43.1 ? N1 ZG9 601 A 1 HETATM 17 C C11 ZG9 . . . B 2 -14.247 -29.471 -63.022 1 43.21 ? C11 ZG9 601 A 1 HETATM 18 C C12 ZG9 . . . B 2 -13.821 -28.436 -62.027 1 40.07 ? C12 ZG9 601 A 1 HETATM 19 O O6 ZG9 . . . B 2 -14.068 -29.307 -64.223 1 43.48 ? O6 ZG9 601 A 1 HETATM 20 C C13 ZG9 . . . B 2 -16.841 -31.906 -63.204 1 50.83 ? C13 ZG9 601 A 1 HETATM 21 O O7 ZG9 . . . B 2 -17.569 -30.715 -63.516 1 50.42 ? O7 ZG9 601 A 1 HETATM 22 C C14 ZG9 . . . B 2 -17.306 -33.115 -64.032 1 51.38 ? C14 ZG9 601 A 1 HETATM 23 O O8 ZG9 . . . B 2 -18.665 -33.432 -63.736 1 53.83 ? O8 ZG9 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 431 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #