data_8GFC
#
_model_server_result.job_id            GnT6ssGOmFWzT1klTEE3zQ 
_model_server_result.datetime_utc      '2024-11-30 04:09:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gfc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8GFC 
#
_exptl.entry_id    8GFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              320.339 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-4-amino-2,4-dideoxy-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GFC 
_cell.length_a            176.494 
_cell.length_b            176.494 
_cell.length_c            176.494 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             90 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              87 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             105 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              102 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.123 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C13 H24 N2 O7' 
_chem_comp.formula_weight    320.339 
_chem_comp.id                ZI2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-4-amino-2,4-dideoxy-beta-D-glucopyranoside' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 O3 ZI2 sing 405 n n 
C7 C6 ZI2 sing 406 n n 
O1 C2 ZI2 doub 407 n n 
C5 N2 ZI2 sing 408 n n 
C5 C6 ZI2 sing 409 n n 
C5 C4 ZI2 sing 410 n n 
O4 C6 ZI2 sing 411 n n 
O4 C8 ZI2 sing 412 n n 
O5 C8 ZI2 sing 413 n n 
O5 C9 ZI2 sing 414 n n 
O2 C4 ZI2 sing 415 n n 
C3 C4 ZI2 sing 416 n n 
C3 C8 ZI2 sing 417 n n 
C3 N1 ZI2 sing 418 n n 
C2 N1 ZI2 sing 419 n n 
C2 C1 ZI2 sing 420 n n 
C9 C10 ZI2 sing 421 n n 
C11 C10 ZI2 sing 422 n n 
C11 O6 ZI2 sing 423 n n 
C10 O7 ZI2 sing 424 n n 
O6 C12 ZI2 sing 425 n n 
O7 C13 ZI2 sing 426 n n 
C12 C13 ZI2 sing 427 n n 
C1 H1 ZI2 sing 428 n n 
C1 H2 ZI2 sing 429 n n 
C1 H3 ZI2 sing 430 n n 
N1 H4 ZI2 sing 431 n n 
C3 H5 ZI2 sing 432 n n 
C4 H6 ZI2 sing 433 n n 
O2 H7 ZI2 sing 434 n n 
C5 H8 ZI2 sing 435 n n 
N2 H9 ZI2 sing 436 n n 
N2 H10 ZI2 sing 437 n n 
C6 H12 ZI2 sing 438 n n 
C7 H13 ZI2 sing 439 n n 
C7 H14 ZI2 sing 440 n n 
O3 H15 ZI2 sing 441 n n 
C8 H16 ZI2 sing 442 n n 
C9 H17 ZI2 sing 443 n n 
C9 H18 ZI2 sing 444 n n 
C10 H19 ZI2 sing 445 n n 
C11 H20 ZI2 sing 446 n n 
C11 H21 ZI2 sing 447 n n 
C12 H22 ZI2 sing 448 n n 
C12 H23 ZI2 sing 449 n n 
C13 H24 ZI2 sing 450 n n 
C13 H25 ZI2 sing 451 n n 
#
_atom_sites.entry_id                     8GFC 
_atom_sites.fract_transf_matrix[1][1]    0.005666 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005666 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005666 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZI2 A 1 601 1 ZI2 UNL . 
C 3 CIT A 1 602 2 CIT CIT . 
D 4 DMS A 1 603 7 DMS DMS . 
E 4 DMS A 1 604 8 DMS DMS . 
F 5 HOH A 1 701 12 HOH HOH . 
F 5 HOH A 2 702 83 HOH HOH . 
F 5 HOH A 3 703 106 HOH HOH . 
F 5 HOH A 4 704 93 HOH HOH . 
F 5 HOH A 5 705 81 HOH HOH . 
F 5 HOH A 6 706 13 HOH HOH . 
F 5 HOH A 7 707 79 HOH HOH . 
F 5 HOH A 8 708 100 HOH HOH . 
F 5 HOH A 9 709 50 HOH HOH . 
F 5 HOH A 10 710 99 HOH HOH . 
F 5 HOH A 11 711 104 HOH HOH . 
F 5 HOH A 12 712 68 HOH HOH . 
F 5 HOH A 13 713 35 HOH HOH . 
F 5 HOH A 14 714 97 HOH HOH . 
F 5 HOH A 15 715 48 HOH HOH . 
F 5 HOH A 16 716 21 HOH HOH . 
F 5 HOH A 17 717 34 HOH HOH . 
F 5 HOH A 18 718 8 HOH HOH . 
F 5 HOH A 19 719 89 HOH HOH . 
F 5 HOH A 20 720 24 HOH HOH . 
F 5 HOH A 21 721 28 HOH HOH . 
F 5 HOH A 22 722 46 HOH HOH . 
F 5 HOH A 23 723 90 HOH HOH . 
F 5 HOH A 24 724 49 HOH HOH . 
F 5 HOH A 25 725 78 HOH HOH . 
F 5 HOH A 26 726 110 HOH HOH . 
F 5 HOH A 27 727 74 HOH HOH . 
F 5 HOH A 28 728 55 HOH HOH . 
F 5 HOH A 29 729 109 HOH HOH . 
F 5 HOH A 30 730 29 HOH HOH . 
F 5 HOH A 31 731 75 HOH HOH . 
F 5 HOH A 32 732 63 HOH HOH . 
F 5 HOH A 33 733 87 HOH HOH . 
F 5 HOH A 34 734 20 HOH HOH . 
F 5 HOH A 35 735 102 HOH HOH . 
F 5 HOH A 36 736 32 HOH HOH . 
F 5 HOH A 37 737 27 HOH HOH . 
F 5 HOH A 38 738 71 HOH HOH . 
F 5 HOH A 39 739 62 HOH HOH . 
F 5 HOH A 40 740 30 HOH HOH . 
F 5 HOH A 41 741 67 HOH HOH . 
F 5 HOH A 42 742 57 HOH HOH . 
F 5 HOH A 43 743 101 HOH HOH . 
F 5 HOH A 44 744 42 HOH HOH . 
F 5 HOH A 45 745 41 HOH HOH . 
F 5 HOH A 46 746 64 HOH HOH . 
F 5 HOH A 47 747 54 HOH HOH . 
F 5 HOH A 48 748 91 HOH HOH . 
F 5 HOH A 49 749 17 HOH HOH . 
F 5 HOH A 50 750 33 HOH HOH . 
F 5 HOH A 51 751 23 HOH HOH . 
F 5 HOH A 52 752 108 HOH HOH . 
F 5 HOH A 53 753 16 HOH HOH . 
F 5 HOH A 54 754 80 HOH HOH . 
F 5 HOH A 55 755 44 HOH HOH . 
F 5 HOH A 56 756 92 HOH HOH . 
F 5 HOH A 57 757 58 HOH HOH . 
F 5 HOH A 58 758 19 HOH HOH . 
F 5 HOH A 59 759 61 HOH HOH . 
F 5 HOH A 60 760 11 HOH HOH . 
F 5 HOH A 61 761 45 HOH HOH . 
F 5 HOH A 62 762 53 HOH HOH . 
F 5 HOH A 63 763 37 HOH HOH . 
F 5 HOH A 64 764 51 HOH HOH . 
F 5 HOH A 65 765 31 HOH HOH . 
F 5 HOH A 66 766 69 HOH HOH . 
F 5 HOH A 67 767 76 HOH HOH . 
F 5 HOH A 68 768 107 HOH HOH . 
F 5 HOH A 69 769 26 HOH HOH . 
F 5 HOH A 70 770 14 HOH HOH . 
F 5 HOH A 71 771 65 HOH HOH . 
F 5 HOH A 72 772 72 HOH HOH . 
F 5 HOH A 73 773 60 HOH HOH . 
F 5 HOH A 74 774 59 HOH HOH . 
F 5 HOH A 75 775 52 HOH HOH . 
F 5 HOH A 76 776 36 HOH HOH . 
F 5 HOH A 77 777 82 HOH HOH . 
F 5 HOH A 78 778 70 HOH HOH . 
F 5 HOH A 79 779 43 HOH HOH . 
F 5 HOH A 80 780 56 HOH HOH . 
F 5 HOH A 81 781 38 HOH HOH . 
F 5 HOH A 82 782 103 HOH HOH . 
F 5 HOH A 83 783 18 HOH HOH . 
F 5 HOH A 84 784 2 HOH HOH . 
F 5 HOH A 85 785 47 HOH HOH . 
F 5 HOH A 86 786 15 HOH HOH . 
F 5 HOH A 87 787 22 HOH HOH . 
F 5 HOH A 88 788 95 HOH HOH . 
F 5 HOH A 89 789 9 HOH HOH . 
F 5 HOH A 90 790 4 HOH HOH . 
F 5 HOH A 91 791 5 HOH HOH . 
F 5 HOH A 92 792 40 HOH HOH . 
F 5 HOH A 93 793 10 HOH HOH . 
F 5 HOH A 94 794 25 HOH HOH . 
F 5 HOH A 95 795 7 HOH HOH . 
F 5 HOH A 96 796 6 HOH HOH . 
F 5 HOH A 97 797 84 HOH HOH . 
F 5 HOH A 98 798 96 HOH HOH . 
F 5 HOH A 99 799 73 HOH HOH . 
F 5 HOH A 100 800 105 HOH HOH . 
F 5 HOH A 101 801 39 HOH HOH . 
F 5 HOH A 102 802 94 HOH HOH . 
F 5 HOH A 103 803 66 HOH HOH . 
F 5 HOH A 104 804 86 HOH HOH . 
F 5 HOH A 105 805 77 HOH HOH . 
F 5 HOH A 106 806 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ZI2 . . . B 2 -13.566 -28.421 -61.719 1 55.41 ? C1 ZI2 601 A 1 
HETATM 2 C C2 ZI2 . . . B 2 -14.07 -29.391 -62.752 1 61.88 ? C2 ZI2 601 A 1 
HETATM 3 O O1 ZI2 . . . B 2 -13.937 -29.166 -63.946 1 62.27 ? O1 ZI2 601 A 1 
HETATM 4 N N1 ZI2 . . . B 2 -14.702 -30.497 -62.325 1 65.9 ? N1 ZI2 601 A 1 
HETATM 5 C C3 ZI2 . . . B 2 -15.189 -31.576 -63.169 1 63.34 ? C3 ZI2 601 A 1 
HETATM 6 C C4 ZI2 . . . B 2 -16.704 -31.687 -62.995 1 65.16 ? C4 ZI2 601 A 1 
HETATM 7 O O2 ZI2 . . . B 2 -17.391 -30.466 -63.277 1 56.89 ? O2 ZI2 601 A 1 
HETATM 8 C C5 ZI2 . . . B 2 -17.24 -32.815 -63.887 1 71.18 ? C5 ZI2 601 A 1 
HETATM 9 N N2 ZI2 . . . B 2 -18.704 -32.931 -63.841 1 74.27 ? N2 ZI2 601 A 1 
HETATM 10 C C6 ZI2 . . . B 2 -16.576 -34.138 -63.499 1 66.34 ? C6 ZI2 601 A 1 
HETATM 11 C C7 ZI2 . . . B 2 -16.978 -35.285 -64.381 1 68.89 ? C7 ZI2 601 A 1 
HETATM 12 O O3 ZI2 . . . B 2 -16.282 -36.45 -63.969 1 65.5 ? O3 ZI2 601 A 1 
HETATM 13 O O4 ZI2 . . . B 2 -15.172 -33.992 -63.677 1 63.62 ? O4 ZI2 601 A 1 
HETATM 14 C C8 ZI2 . . . B 2 -14.545 -32.959 -62.919 1 69.97 ? C8 ZI2 601 A 1 
HETATM 15 O O5 ZI2 . . . B 2 -13.201 -32.981 -63.332 1 77.32 ? O5 ZI2 601 A 1 
HETATM 16 C C9 ZI2 . . . B 2 -12.307 -33.721 -62.473 1 91.05 ? C9 ZI2 601 A 1 
HETATM 17 C C10 ZI2 . . . B 2 -11.767 -32.741 -61.454 1 115.36 ? C10 ZI2 601 A 1 
HETATM 18 C C11 ZI2 . . . B 2 -10.939 -31.621 -62.024 1 117.28 ? C11 ZI2 601 A 1 
HETATM 19 O O6 ZI2 . . . B 2 -10.47 -30.759 -60.992 1 124.14 ? O6 ZI2 601 A 1 
HETATM 20 C C12 ZI2 . . . B 2 -9.698 -31.502 -60.045 1 127.71 ? C12 ZI2 601 A 1 
HETATM 21 C C13 ZI2 . . . B 2 -10.486 -32.648 -59.447 1 132.89 ? C13 ZI2 601 A 1 
HETATM 22 O O7 ZI2 . . . B 2 -11.08 -33.487 -60.443 1 129.23 ? O7 ZI2 601 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           87 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           1395 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           22 
#