data_8GFE # _model_server_result.job_id 6_5Fz4kadLzPSyyfm8kwDA _model_server_result.datetime_utc '2024-11-19 11:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8GFE # _exptl.entry_id 8GFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFE _cell.length_a 175.474 _cell.length_b 175.474 _cell.length_c 175.474 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.104 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 103 n n S C1 DMS sing 104 n n S C2 DMS sing 105 n n C1 H11 DMS sing 106 n n C1 H12 DMS sing 107 n n C1 H13 DMS sing 108 n n C2 H21 DMS sing 109 n n C2 H22 DMS sing 110 n n C2 H23 DMS sing 111 n n # _atom_sites.entry_id 8GFE _atom_sites.fract_transf_matrix[1][1] 0.005699 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005699 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZH8 A 1 601 1 ZH8 UNL . C 3 CIT A 1 602 2 CIT CIT . D 4 DMS A 1 603 3 DMS DMS . E 4 DMS A 1 604 4 DMS DMS . F 4 DMS A 1 605 5 DMS DMS . G 5 HOH A 1 701 124 HOH HOH . G 5 HOH A 2 702 205 HOH HOH . G 5 HOH A 3 703 324 HOH HOH . G 5 HOH A 4 704 330 HOH HOH . G 5 HOH A 5 705 119 HOH HOH . G 5 HOH A 6 706 82 HOH HOH . G 5 HOH A 7 707 371 HOH HOH . G 5 HOH A 8 708 301 HOH HOH . G 5 HOH A 9 709 91 HOH HOH . G 5 HOH A 10 710 49 HOH HOH . G 5 HOH A 11 711 50 HOH HOH . G 5 HOH A 12 712 1 HOH HOH . G 5 HOH A 13 713 92 HOH HOH . G 5 HOH A 14 714 3 HOH HOH . G 5 HOH A 15 715 133 HOH HOH . G 5 HOH A 16 716 335 HOH HOH . G 5 HOH A 17 717 85 HOH HOH . G 5 HOH A 18 718 288 HOH HOH . G 5 HOH A 19 719 175 HOH HOH . G 5 HOH A 20 720 334 HOH HOH . G 5 HOH A 21 721 65 HOH HOH . G 5 HOH A 22 722 110 HOH HOH . G 5 HOH A 23 723 147 HOH HOH . G 5 HOH A 24 724 140 HOH HOH . G 5 HOH A 25 725 48 HOH HOH . G 5 HOH A 26 726 166 HOH HOH . G 5 HOH A 27 727 163 HOH HOH . G 5 HOH A 28 728 54 HOH HOH . G 5 HOH A 29 729 51 HOH HOH . G 5 HOH A 30 730 68 HOH HOH . G 5 HOH A 31 731 57 HOH HOH . G 5 HOH A 32 732 348 HOH HOH . G 5 HOH A 33 733 58 HOH HOH . G 5 HOH A 34 734 67 HOH HOH . G 5 HOH A 35 735 90 HOH HOH . G 5 HOH A 36 736 123 HOH HOH . G 5 HOH A 37 737 368 HOH HOH . G 5 HOH A 38 738 64 HOH HOH . G 5 HOH A 39 739 266 HOH HOH . G 5 HOH A 40 740 130 HOH HOH . G 5 HOH A 41 741 304 HOH HOH . G 5 HOH A 42 742 292 HOH HOH . G 5 HOH A 43 743 312 HOH HOH . G 5 HOH A 44 744 317 HOH HOH . G 5 HOH A 45 745 305 HOH HOH . G 5 HOH A 46 746 333 HOH HOH . G 5 HOH A 47 747 94 HOH HOH . G 5 HOH A 48 748 99 HOH HOH . G 5 HOH A 49 749 296 HOH HOH . G 5 HOH A 50 750 293 HOH HOH . G 5 HOH A 51 751 347 HOH HOH . G 5 HOH A 52 752 316 HOH HOH . G 5 HOH A 53 753 303 HOH HOH . G 5 HOH A 54 754 297 HOH HOH . G 5 HOH A 55 755 268 HOH HOH . G 5 HOH A 56 756 356 HOH HOH . G 5 HOH A 57 757 2 HOH HOH . G 5 HOH A 58 758 33 HOH HOH . G 5 HOH A 59 759 83 HOH HOH . G 5 HOH A 60 760 369 HOH HOH . G 5 HOH A 61 761 258 HOH HOH . G 5 HOH A 62 762 75 HOH HOH . G 5 HOH A 63 763 367 HOH HOH . G 5 HOH A 64 764 308 HOH HOH . G 5 HOH A 65 765 111 HOH HOH . G 5 HOH A 66 766 80 HOH HOH . G 5 HOH A 67 767 69 HOH HOH . G 5 HOH A 68 768 81 HOH HOH . G 5 HOH A 69 769 84 HOH HOH . G 5 HOH A 70 770 370 HOH HOH . G 5 HOH A 71 771 253 HOH HOH . G 5 HOH A 72 772 326 HOH HOH . G 5 HOH A 73 773 311 HOH HOH . G 5 HOH A 74 774 42 HOH HOH . G 5 HOH A 75 775 257 HOH HOH . G 5 HOH A 76 776 162 HOH HOH . G 5 HOH A 77 777 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 -30.854 25.026 -60.364 1 76.45 ? S DMS 603 A 1 HETATM 2 O O DMS . . . D 4 -29.924 25.835 -61.256 1 80.78 ? O DMS 603 A 1 HETATM 3 C C1 DMS . . . D 4 -32.235 26.101 -59.994 1 69.55 ? C1 DMS 603 A 1 HETATM 4 C C2 DMS . . . D 4 -31.711 23.933 -61.477 1 81.94 ? C2 DMS 603 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #