data_8GFF # _model_server_result.job_id 3OuF06ykAWAIcn_h7jhATg _model_server_result.datetime_utc '2024-11-19 13:28:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 8GFF # _exptl.entry_id 8GFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFF _cell.length_a 176.9 _cell.length_b 176.9 _cell.length_c 176.9 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.159 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 103 n n S C1 DMS sing 104 n n S C2 DMS sing 105 n n C1 H11 DMS sing 106 n n C1 H12 DMS sing 107 n n C1 H13 DMS sing 108 n n C2 H21 DMS sing 109 n n C2 H22 DMS sing 110 n n C2 H23 DMS sing 111 n n # _atom_sites.entry_id 8GFF _atom_sites.fract_transf_matrix[1][1] 0.005653 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZHE A 1 601 1 ZHE UNL . C 3 CIT A 1 602 2 CIT CIT . D 4 DMS A 1 603 3 DMS DMS . E 4 DMS A 1 604 4 DMS DMS . F 4 DMS A 1 605 5 DMS DMS . G 5 HOH A 1 701 17 HOH HOH . G 5 HOH A 2 702 107 HOH HOH . G 5 HOH A 3 703 8 HOH HOH . G 5 HOH A 4 704 295 HOH HOH . G 5 HOH A 5 705 357 HOH HOH . G 5 HOH A 6 706 45 HOH HOH . G 5 HOH A 7 707 195 HOH HOH . G 5 HOH A 8 708 6 HOH HOH . G 5 HOH A 9 709 134 HOH HOH . G 5 HOH A 10 710 322 HOH HOH . G 5 HOH A 11 711 1 HOH HOH . G 5 HOH A 12 712 116 HOH HOH . G 5 HOH A 13 713 330 HOH HOH . G 5 HOH A 14 714 343 HOH HOH . G 5 HOH A 15 715 324 HOH HOH . G 5 HOH A 16 716 4 HOH HOH . G 5 HOH A 17 717 82 HOH HOH . G 5 HOH A 18 718 165 HOH HOH . G 5 HOH A 19 719 126 HOH HOH . G 5 HOH A 20 720 97 HOH HOH . G 5 HOH A 21 721 100 HOH HOH . G 5 HOH A 22 722 125 HOH HOH . G 5 HOH A 23 723 342 HOH HOH . G 5 HOH A 24 724 48 HOH HOH . G 5 HOH A 25 725 337 HOH HOH . G 5 HOH A 26 726 196 HOH HOH . G 5 HOH A 27 727 96 HOH HOH . G 5 HOH A 28 728 41 HOH HOH . G 5 HOH A 29 729 161 HOH HOH . G 5 HOH A 30 730 183 HOH HOH . G 5 HOH A 31 731 210 HOH HOH . G 5 HOH A 32 732 148 HOH HOH . G 5 HOH A 33 733 73 HOH HOH . G 5 HOH A 34 734 149 HOH HOH . G 5 HOH A 35 735 278 HOH HOH . G 5 HOH A 36 736 142 HOH HOH . G 5 HOH A 37 737 294 HOH HOH . G 5 HOH A 38 738 310 HOH HOH . G 5 HOH A 39 739 335 HOH HOH . G 5 HOH A 40 740 303 HOH HOH . G 5 HOH A 41 741 30 HOH HOH . G 5 HOH A 42 742 331 HOH HOH . G 5 HOH A 43 743 51 HOH HOH . G 5 HOH A 44 744 21 HOH HOH . G 5 HOH A 45 745 189 HOH HOH . G 5 HOH A 46 746 288 HOH HOH . G 5 HOH A 47 747 106 HOH HOH . G 5 HOH A 48 748 146 HOH HOH . G 5 HOH A 49 749 192 HOH HOH . G 5 HOH A 50 750 213 HOH HOH . G 5 HOH A 51 751 12 HOH HOH . G 5 HOH A 52 752 186 HOH HOH . G 5 HOH A 53 753 338 HOH HOH . G 5 HOH A 54 754 158 HOH HOH . G 5 HOH A 55 755 65 HOH HOH . G 5 HOH A 56 756 139 HOH HOH . G 5 HOH A 57 757 61 HOH HOH . G 5 HOH A 58 758 154 HOH HOH . G 5 HOH A 59 759 301 HOH HOH . G 5 HOH A 60 760 53 HOH HOH . G 5 HOH A 61 761 110 HOH HOH . G 5 HOH A 62 762 109 HOH HOH . G 5 HOH A 63 763 178 HOH HOH . G 5 HOH A 64 764 188 HOH HOH . G 5 HOH A 65 765 127 HOH HOH . G 5 HOH A 66 766 291 HOH HOH . G 5 HOH A 67 767 344 HOH HOH . G 5 HOH A 68 768 77 HOH HOH . G 5 HOH A 69 769 360 HOH HOH . G 5 HOH A 70 770 85 HOH HOH . G 5 HOH A 71 771 163 HOH HOH . G 5 HOH A 72 772 170 HOH HOH . G 5 HOH A 73 773 68 HOH HOH . G 5 HOH A 74 774 60 HOH HOH . G 5 HOH A 75 775 220 HOH HOH . G 5 HOH A 76 776 175 HOH HOH . G 5 HOH A 77 777 353 HOH HOH . G 5 HOH A 78 778 124 HOH HOH . G 5 HOH A 79 779 102 HOH HOH . G 5 HOH A 80 780 26 HOH HOH . G 5 HOH A 81 781 289 HOH HOH . G 5 HOH A 82 782 340 HOH HOH . G 5 HOH A 83 783 187 HOH HOH . G 5 HOH A 84 784 167 HOH HOH . G 5 HOH A 85 785 314 HOH HOH . G 5 HOH A 86 786 58 HOH HOH . G 5 HOH A 87 787 320 HOH HOH . G 5 HOH A 88 788 120 HOH HOH . G 5 HOH A 89 789 90 HOH HOH . G 5 HOH A 90 790 91 HOH HOH . G 5 HOH A 91 791 328 HOH HOH . G 5 HOH A 92 792 76 HOH HOH . G 5 HOH A 93 793 156 HOH HOH . G 5 HOH A 94 794 312 HOH HOH . G 5 HOH A 95 795 147 HOH HOH . G 5 HOH A 96 796 72 HOH HOH . G 5 HOH A 97 797 94 HOH HOH . G 5 HOH A 98 798 226 HOH HOH . G 5 HOH A 99 799 13 HOH HOH . G 5 HOH A 100 800 164 HOH HOH . G 5 HOH A 101 801 355 HOH HOH . G 5 HOH A 102 802 119 HOH HOH . G 5 HOH A 103 803 233 HOH HOH . G 5 HOH A 104 804 49 HOH HOH . G 5 HOH A 105 805 181 HOH HOH . G 5 HOH A 106 806 268 HOH HOH . G 5 HOH A 107 807 298 HOH HOH . G 5 HOH A 108 808 43 HOH HOH . G 5 HOH A 109 809 103 HOH HOH . G 5 HOH A 110 810 339 HOH HOH . G 5 HOH A 111 811 16 HOH HOH . G 5 HOH A 112 812 313 HOH HOH . G 5 HOH A 113 813 180 HOH HOH . G 5 HOH A 114 814 368 HOH HOH . G 5 HOH A 115 815 273 HOH HOH . G 5 HOH A 116 816 286 HOH HOH . G 5 HOH A 117 817 79 HOH HOH . G 5 HOH A 118 818 136 HOH HOH . G 5 HOH A 119 819 133 HOH HOH . G 5 HOH A 120 820 137 HOH HOH . G 5 HOH A 121 821 112 HOH HOH . G 5 HOH A 122 822 157 HOH HOH . G 5 HOH A 123 823 266 HOH HOH . G 5 HOH A 124 824 290 HOH HOH . G 5 HOH A 125 825 92 HOH HOH . G 5 HOH A 126 826 86 HOH HOH . G 5 HOH A 127 827 101 HOH HOH . G 5 HOH A 128 828 50 HOH HOH . G 5 HOH A 129 829 11 HOH HOH . G 5 HOH A 130 830 78 HOH HOH . G 5 HOH A 131 831 345 HOH HOH . G 5 HOH A 132 832 55 HOH HOH . G 5 HOH A 133 833 59 HOH HOH . G 5 HOH A 134 834 369 HOH HOH . G 5 HOH A 135 835 236 HOH HOH . G 5 HOH A 136 836 93 HOH HOH . G 5 HOH A 137 837 315 HOH HOH . G 5 HOH A 138 838 122 HOH HOH . G 5 HOH A 139 839 333 HOH HOH . G 5 HOH A 140 840 143 HOH HOH . G 5 HOH A 141 841 191 HOH HOH . G 5 HOH A 142 842 334 HOH HOH . G 5 HOH A 143 843 87 HOH HOH . G 5 HOH A 144 844 152 HOH HOH . G 5 HOH A 145 845 67 HOH HOH . G 5 HOH A 146 846 130 HOH HOH . G 5 HOH A 147 847 321 HOH HOH . G 5 HOH A 148 848 2 HOH HOH . G 5 HOH A 149 849 293 HOH HOH . G 5 HOH A 150 850 174 HOH HOH . G 5 HOH A 151 851 205 HOH HOH . G 5 HOH A 152 852 305 HOH HOH . G 5 HOH A 153 853 63 HOH HOH . G 5 HOH A 154 854 323 HOH HOH . G 5 HOH A 155 855 169 HOH HOH . G 5 HOH A 156 856 118 HOH HOH . G 5 HOH A 157 857 14 HOH HOH . G 5 HOH A 158 858 121 HOH HOH . G 5 HOH A 159 859 200 HOH HOH . G 5 HOH A 160 860 350 HOH HOH . G 5 HOH A 161 861 138 HOH HOH . G 5 HOH A 162 862 131 HOH HOH . G 5 HOH A 163 863 123 HOH HOH . G 5 HOH A 164 864 140 HOH HOH . G 5 HOH A 165 865 348 HOH HOH . G 5 HOH A 166 866 329 HOH HOH . G 5 HOH A 167 867 307 HOH HOH . G 5 HOH A 168 868 349 HOH HOH . G 5 HOH A 169 869 64 HOH HOH . G 5 HOH A 170 870 327 HOH HOH . G 5 HOH A 171 871 117 HOH HOH . G 5 HOH A 172 872 316 HOH HOH . G 5 HOH A 173 873 302 HOH HOH . G 5 HOH A 174 874 132 HOH HOH . G 5 HOH A 175 875 296 HOH HOH . G 5 HOH A 176 876 129 HOH HOH . G 5 HOH A 177 877 54 HOH HOH . G 5 HOH A 178 878 3 HOH HOH . G 5 HOH A 179 879 341 HOH HOH . G 5 HOH A 180 880 292 HOH HOH . G 5 HOH A 181 881 347 HOH HOH . G 5 HOH A 182 882 356 HOH HOH . G 5 HOH A 183 883 33 HOH HOH . G 5 HOH A 184 884 98 HOH HOH . G 5 HOH A 185 885 99 HOH HOH . G 5 HOH A 186 886 80 HOH HOH . G 5 HOH A 187 887 166 HOH HOH . G 5 HOH A 188 888 83 HOH HOH . G 5 HOH A 189 889 105 HOH HOH . G 5 HOH A 190 890 56 HOH HOH . G 5 HOH A 191 891 262 HOH HOH . G 5 HOH A 192 892 81 HOH HOH . G 5 HOH A 193 893 38 HOH HOH . G 5 HOH A 194 894 370 HOH HOH . G 5 HOH A 195 895 113 HOH HOH . G 5 HOH A 196 896 52 HOH HOH . G 5 HOH A 197 897 309 HOH HOH . G 5 HOH A 198 898 172 HOH HOH . G 5 HOH A 199 899 15 HOH HOH . G 5 HOH A 200 900 304 HOH HOH . G 5 HOH A 201 901 84 HOH HOH . G 5 HOH A 202 902 160 HOH HOH . G 5 HOH A 203 903 317 HOH HOH . G 5 HOH A 204 904 176 HOH HOH . G 5 HOH A 205 905 269 HOH HOH . G 5 HOH A 206 906 372 HOH HOH . G 5 HOH A 207 907 88 HOH HOH . G 5 HOH A 208 908 70 HOH HOH . G 5 HOH A 209 909 190 HOH HOH . G 5 HOH A 210 910 271 HOH HOH . G 5 HOH A 211 911 135 HOH HOH . G 5 HOH A 212 912 144 HOH HOH . G 5 HOH A 213 913 57 HOH HOH . G 5 HOH A 214 914 367 HOH HOH . G 5 HOH A 215 915 145 HOH HOH . G 5 HOH A 216 916 5 HOH HOH . G 5 HOH A 217 917 66 HOH HOH . G 5 HOH A 218 918 111 HOH HOH . G 5 HOH A 219 919 35 HOH HOH . G 5 HOH A 220 920 89 HOH HOH . G 5 HOH A 221 921 69 HOH HOH . G 5 HOH A 222 922 75 HOH HOH . G 5 HOH A 223 923 218 HOH HOH . G 5 HOH A 224 924 74 HOH HOH . G 5 HOH A 225 925 229 HOH HOH . G 5 HOH A 226 926 332 HOH HOH . G 5 HOH A 227 927 162 HOH HOH . G 5 HOH A 228 928 297 HOH HOH . G 5 HOH A 229 929 71 HOH HOH . G 5 HOH A 230 930 319 HOH HOH . G 5 HOH A 231 931 308 HOH HOH . G 5 HOH A 232 932 257 HOH HOH . G 5 HOH A 233 933 253 HOH HOH . G 5 HOH A 234 934 42 HOH HOH . G 5 HOH A 235 935 306 HOH HOH . G 5 HOH A 236 936 32 HOH HOH . G 5 HOH A 237 937 150 HOH HOH . G 5 HOH A 238 938 263 HOH HOH . G 5 HOH A 239 939 208 HOH HOH . G 5 HOH A 240 940 326 HOH HOH . G 5 HOH A 241 941 336 HOH HOH . G 5 HOH A 242 942 258 HOH HOH . G 5 HOH A 243 943 311 HOH HOH . G 5 HOH A 244 944 371 HOH HOH . G 5 HOH A 245 945 141 HOH HOH . G 5 HOH A 246 946 114 HOH HOH . G 5 HOH A 247 947 151 HOH HOH . G 5 HOH A 248 948 254 HOH HOH . G 5 HOH A 249 949 351 HOH HOH . G 5 HOH A 250 950 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 31.505 60.973 -25.328 1 47.67 ? S DMS 603 A 1 HETATM 2 O O DMS . . . D 4 30.358 61.685 -26.065 1 45.25 ? O DMS 603 A 1 HETATM 3 C C1 DMS . . . D 4 32.75 60.686 -26.552 1 45.45 ? C1 DMS 603 A 1 HETATM 4 C C2 DMS . . . D 4 32.313 62.312 -24.479 1 49.82 ? C2 DMS 603 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #