data_8GFG # _model_server_result.job_id Rzxvscr-dNUbCCDEF7vxog _model_server_result.datetime_utc '2024-10-18 15:28:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8GFG # _exptl.entry_id 8GFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.356 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3S,3aR,5S,6S,6aS)-2-oxohexahydro-2H-3,5-methanocyclopenta[b]furan-6-yl 2-acetamido-2-deoxy-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFG _cell.length_a 176.299 _cell.length_b 176.299 _cell.length_c 176.299 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.123 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H23 N O8' _chem_comp.formula_weight 357.356 _chem_comp.id ZHL _chem_comp.mon_nstd_flag . _chem_comp.name '(3S,3aR,5S,6S,6aS)-2-oxohexahydro-2H-3,5-methanocyclopenta[b]furan-6-yl 2-acetamido-2-deoxy-beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C5 ZHL sing 405 n n O2 C4 ZHL sing 406 n n C5 C4 ZHL sing 407 n n C5 C6 ZHL sing 408 n n C4 C3 ZHL sing 409 n n C7 C6 ZHL sing 410 n n C7 O4 ZHL sing 411 n n C6 O5 ZHL sing 412 n n C3 N1 ZHL sing 413 n n C3 C8 ZHL sing 414 n n O5 C8 ZHL sing 415 n n N1 C2 ZHL sing 416 n n C8 O6 ZHL sing 417 n n C2 O1 ZHL doub 418 n n C2 C1 ZHL sing 419 n n O6 C9 ZHL sing 420 n n C9 C10 ZHL sing 421 n n C9 C14 ZHL sing 422 n n C10 C11 ZHL sing 423 n n C10 C16 ZHL sing 424 n n C14 O8 ZHL sing 425 n n C14 C15 ZHL sing 426 n n C11 C12 ZHL sing 427 n n O8 C13 ZHL sing 428 n n C16 C15 ZHL sing 429 n n C15 C12 ZHL sing 430 n n C13 C12 ZHL sing 431 n n C13 O7 ZHL doub 432 n n O3 H1 ZHL sing 433 n n O2 H2 ZHL sing 434 n n C5 H3 ZHL sing 435 n n C4 H4 ZHL sing 436 n n N1 H5 ZHL sing 437 n n C6 H6 ZHL sing 438 n n C3 H7 ZHL sing 439 n n C7 H8 ZHL sing 440 n n C7 H9 ZHL sing 441 n n C8 H10 ZHL sing 442 n n C9 H11 ZHL sing 443 n n C10 H12 ZHL sing 444 n n C1 H13 ZHL sing 445 n n C1 H14 ZHL sing 446 n n C1 H15 ZHL sing 447 n n O4 H16 ZHL sing 448 n n C11 H17 ZHL sing 449 n n C11 H18 ZHL sing 450 n n C12 H19 ZHL sing 451 n n C14 H20 ZHL sing 452 n n C15 H21 ZHL sing 453 n n C16 H22 ZHL sing 454 n n C16 H23 ZHL sing 455 n n # _atom_sites.entry_id 8GFG _atom_sites.fract_transf_matrix[1][1] 0.005672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZHL A 1 601 1 ZHL UN3 . C 3 CIT A 1 602 2 CIT CIT . D 4 DMS A 1 603 3 DMS DMS . E 4 DMS A 1 604 4 DMS DMS . F 4 DMS A 1 605 5 DMS DMS . G 5 HOH A 1 701 360 HOH HOH . G 5 HOH A 2 702 330 HOH HOH . G 5 HOH A 3 703 324 HOH HOH . G 5 HOH A 4 704 91 HOH HOH . G 5 HOH A 5 705 175 HOH HOH . G 5 HOH A 6 706 288 HOH HOH . G 5 HOH A 7 707 346 HOH HOH . G 5 HOH A 8 708 107 HOH HOH . G 5 HOH A 9 709 310 HOH HOH . G 5 HOH A 10 710 82 HOH HOH . G 5 HOH A 11 711 213 HOH HOH . G 5 HOH A 12 712 158 HOH HOH . G 5 HOH A 13 713 55 HOH HOH . G 5 HOH A 14 714 362 HOH HOH . G 5 HOH A 15 715 50 HOH HOH . G 5 HOH A 16 716 51 HOH HOH . G 5 HOH A 17 717 60 HOH HOH . G 5 HOH A 18 718 124 HOH HOH . G 5 HOH A 19 719 48 HOH HOH . G 5 HOH A 20 720 1 HOH HOH . G 5 HOH A 21 721 85 HOH HOH . G 5 HOH A 22 722 72 HOH HOH . G 5 HOH A 23 723 4 HOH HOH . G 5 HOH A 24 724 54 HOH HOH . G 5 HOH A 25 725 297 HOH HOH . G 5 HOH A 26 726 334 HOH HOH . G 5 HOH A 27 727 49 HOH HOH . G 5 HOH A 28 728 335 HOH HOH . G 5 HOH A 29 729 90 HOH HOH . G 5 HOH A 30 730 301 HOH HOH . G 5 HOH A 31 731 93 HOH HOH . G 5 HOH A 32 732 348 HOH HOH . G 5 HOH A 33 733 143 HOH HOH . G 5 HOH A 34 734 353 HOH HOH . G 5 HOH A 35 735 119 HOH HOH . G 5 HOH A 36 736 189 HOH HOH . G 5 HOH A 37 737 140 HOH HOH . G 5 HOH A 38 738 305 HOH HOH . G 5 HOH A 39 739 96 HOH HOH . G 5 HOH A 40 740 266 HOH HOH . G 5 HOH A 41 741 296 HOH HOH . G 5 HOH A 42 742 328 HOH HOH . G 5 HOH A 43 743 314 HOH HOH . G 5 HOH A 44 744 317 HOH HOH . G 5 HOH A 45 745 65 HOH HOH . G 5 HOH A 46 746 302 HOH HOH . G 5 HOH A 47 747 68 HOH HOH . G 5 HOH A 48 748 361 HOH HOH . G 5 HOH A 49 749 57 HOH HOH . G 5 HOH A 50 750 273 HOH HOH . G 5 HOH A 51 751 110 HOH HOH . G 5 HOH A 52 752 15 HOH HOH . G 5 HOH A 53 753 293 HOH HOH . G 5 HOH A 54 754 64 HOH HOH . G 5 HOH A 55 755 84 HOH HOH . G 5 HOH A 56 756 123 HOH HOH . G 5 HOH A 57 757 333 HOH HOH . G 5 HOH A 58 758 75 HOH HOH . G 5 HOH A 59 759 77 HOH HOH . G 5 HOH A 60 760 97 HOH HOH . G 5 HOH A 61 761 304 HOH HOH . G 5 HOH A 62 762 133 HOH HOH . G 5 HOH A 63 763 356 HOH HOH . G 5 HOH A 64 764 292 HOH HOH . G 5 HOH A 65 765 111 HOH HOH . G 5 HOH A 66 766 94 HOH HOH . G 5 HOH A 67 767 33 HOH HOH . G 5 HOH A 68 768 312 HOH HOH . G 5 HOH A 69 769 315 HOH HOH . G 5 HOH A 70 770 83 HOH HOH . G 5 HOH A 71 771 303 HOH HOH . G 5 HOH A 72 772 268 HOH HOH . G 5 HOH A 73 773 87 HOH HOH . G 5 HOH A 74 774 2 HOH HOH . G 5 HOH A 75 775 306 HOH HOH . G 5 HOH A 76 776 258 HOH HOH . G 5 HOH A 77 777 172 HOH HOH . G 5 HOH A 78 778 308 HOH HOH . G 5 HOH A 79 779 63 HOH HOH . G 5 HOH A 80 780 80 HOH HOH . G 5 HOH A 81 781 88 HOH HOH . G 5 HOH A 82 782 253 HOH HOH . G 5 HOH A 83 783 69 HOH HOH . G 5 HOH A 84 784 326 HOH HOH . G 5 HOH A 85 785 42 HOH HOH . G 5 HOH A 86 786 359 HOH HOH . G 5 HOH A 87 787 336 HOH HOH . G 5 HOH A 88 788 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 ZHL . . . B 2 63.534 -33.082 -18.579 1 76.03 ? O3 ZHL 601 A 1 HETATM 2 O O1 ZHL . . . B 2 63.673 -29.18 -13.706 1 75.61 ? O1 ZHL 601 A 1 HETATM 3 O O2 ZHL . . . B 2 63.062 -30.455 -17.429 1 64.55 ? O2 ZHL 601 A 1 HETATM 4 C C5 ZHL . . . B 2 63.651 -32.816 -17.177 1 75.92 ? C5 ZHL 601 A 1 HETATM 5 C C4 ZHL . . . B 2 62.746 -31.658 -16.737 1 70.32 ? C4 ZHL 601 A 1 HETATM 6 N N1 ZHL . . . B 2 62.07 -30.319 -14.777 1 73.37 ? N1 ZHL 601 A 1 HETATM 7 C C6 ZHL . . . B 2 63.281 -34.092 -16.414 1 70.56 ? C6 ZHL 601 A 1 HETATM 8 C C3 ZHL . . . B 2 62.834 -31.475 -15.222 1 67.25 ? C3 ZHL 601 A 1 HETATM 9 C C2 ZHL . . . B 2 62.488 -29.342 -13.95 1 65.91 ? C2 ZHL 601 A 1 HETATM 10 C C7 ZHL . . . B 2 64.236 -35.228 -16.644 1 66.87 ? C7 ZHL 601 A 1 HETATM 11 C C8 ZHL . . . B 2 62.478 -32.823 -14.541 1 71.99 ? C8 ZHL 601 A 1 HETATM 12 C C9 ZHL . . . B 2 61.611 -32.818 -12.228 1 74.88 ? C9 ZHL 601 A 1 HETATM 13 C C10 ZHL . . . B 2 61.443 -34.196 -11.566 1 74.79 ? C10 ZHL 601 A 1 HETATM 14 C C1 ZHL . . . B 2 61.443 -28.431 -13.364 1 60.93 ? C1 ZHL 601 A 1 HETATM 15 O O4 ZHL . . . B 2 63.725 -36.383 -16.005 1 64.75 ? O4 ZHL 601 A 1 HETATM 16 O O5 ZHL . . . B 2 63.308 -33.889 -14.989 1 62.75 ? O5 ZHL 601 A 1 HETATM 17 O O6 ZHL . . . B 2 62.682 -32.742 -13.153 1 73.74 ? O6 ZHL 601 A 1 HETATM 18 C C11 ZHL . . . B 2 60.176 -34.124 -10.688 1 71.1 ? C11 ZHL 601 A 1 HETATM 19 C C12 ZHL . . . B 2 60.585 -33.102 -9.594 1 79.53 ? C12 ZHL 601 A 1 HETATM 20 C C13 ZHL . . . B 2 59.986 -31.757 -9.857 1 81.02 ? C13 ZHL 601 A 1 HETATM 21 O O7 ZHL . . . B 2 58.962 -31.272 -9.444 1 81.25 ? O7 ZHL 601 A 1 HETATM 22 O O8 ZHL . . . B 2 60.814 -31.053 -10.675 1 76.8 ? O8 ZHL 601 A 1 HETATM 23 C C14 ZHL . . . B 2 61.944 -31.899 -11.036 1 77.28 ? C14 ZHL 601 A 1 HETATM 24 C C15 ZHL . . . B 2 62.096 -32.887 -9.867 1 79.35 ? C15 ZHL 601 A 1 HETATM 25 C C16 ZHL . . . B 2 62.58 -34.175 -10.526 1 76.7 ? C16 ZHL 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #