data_8GFG # _model_server_result.job_id MHfK6fLJw5X-XPSKo81v0g _model_server_result.datetime_utc '2024-10-18 15:24:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8GFG # _exptl.entry_id 8GFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFG _cell.length_a 176.299 _cell.length_b 176.299 _cell.length_c 176.299 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.123 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 8GFG _atom_sites.fract_transf_matrix[1][1] 0.005672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZHL A 1 601 1 ZHL UN3 . C 3 CIT A 1 602 2 CIT CIT . D 4 DMS A 1 603 3 DMS DMS . E 4 DMS A 1 604 4 DMS DMS . F 4 DMS A 1 605 5 DMS DMS . G 5 HOH A 1 701 360 HOH HOH . G 5 HOH A 2 702 330 HOH HOH . G 5 HOH A 3 703 324 HOH HOH . G 5 HOH A 4 704 91 HOH HOH . G 5 HOH A 5 705 175 HOH HOH . G 5 HOH A 6 706 288 HOH HOH . G 5 HOH A 7 707 346 HOH HOH . G 5 HOH A 8 708 107 HOH HOH . G 5 HOH A 9 709 310 HOH HOH . G 5 HOH A 10 710 82 HOH HOH . G 5 HOH A 11 711 213 HOH HOH . G 5 HOH A 12 712 158 HOH HOH . G 5 HOH A 13 713 55 HOH HOH . G 5 HOH A 14 714 362 HOH HOH . G 5 HOH A 15 715 50 HOH HOH . G 5 HOH A 16 716 51 HOH HOH . G 5 HOH A 17 717 60 HOH HOH . G 5 HOH A 18 718 124 HOH HOH . G 5 HOH A 19 719 48 HOH HOH . G 5 HOH A 20 720 1 HOH HOH . G 5 HOH A 21 721 85 HOH HOH . G 5 HOH A 22 722 72 HOH HOH . G 5 HOH A 23 723 4 HOH HOH . G 5 HOH A 24 724 54 HOH HOH . G 5 HOH A 25 725 297 HOH HOH . G 5 HOH A 26 726 334 HOH HOH . G 5 HOH A 27 727 49 HOH HOH . G 5 HOH A 28 728 335 HOH HOH . G 5 HOH A 29 729 90 HOH HOH . G 5 HOH A 30 730 301 HOH HOH . G 5 HOH A 31 731 93 HOH HOH . G 5 HOH A 32 732 348 HOH HOH . G 5 HOH A 33 733 143 HOH HOH . G 5 HOH A 34 734 353 HOH HOH . G 5 HOH A 35 735 119 HOH HOH . G 5 HOH A 36 736 189 HOH HOH . G 5 HOH A 37 737 140 HOH HOH . G 5 HOH A 38 738 305 HOH HOH . G 5 HOH A 39 739 96 HOH HOH . G 5 HOH A 40 740 266 HOH HOH . G 5 HOH A 41 741 296 HOH HOH . G 5 HOH A 42 742 328 HOH HOH . G 5 HOH A 43 743 314 HOH HOH . G 5 HOH A 44 744 317 HOH HOH . G 5 HOH A 45 745 65 HOH HOH . G 5 HOH A 46 746 302 HOH HOH . G 5 HOH A 47 747 68 HOH HOH . G 5 HOH A 48 748 361 HOH HOH . G 5 HOH A 49 749 57 HOH HOH . G 5 HOH A 50 750 273 HOH HOH . G 5 HOH A 51 751 110 HOH HOH . G 5 HOH A 52 752 15 HOH HOH . G 5 HOH A 53 753 293 HOH HOH . G 5 HOH A 54 754 64 HOH HOH . G 5 HOH A 55 755 84 HOH HOH . G 5 HOH A 56 756 123 HOH HOH . G 5 HOH A 57 757 333 HOH HOH . G 5 HOH A 58 758 75 HOH HOH . G 5 HOH A 59 759 77 HOH HOH . G 5 HOH A 60 760 97 HOH HOH . G 5 HOH A 61 761 304 HOH HOH . G 5 HOH A 62 762 133 HOH HOH . G 5 HOH A 63 763 356 HOH HOH . G 5 HOH A 64 764 292 HOH HOH . G 5 HOH A 65 765 111 HOH HOH . G 5 HOH A 66 766 94 HOH HOH . G 5 HOH A 67 767 33 HOH HOH . G 5 HOH A 68 768 312 HOH HOH . G 5 HOH A 69 769 315 HOH HOH . G 5 HOH A 70 770 83 HOH HOH . G 5 HOH A 71 771 303 HOH HOH . G 5 HOH A 72 772 268 HOH HOH . G 5 HOH A 73 773 87 HOH HOH . G 5 HOH A 74 774 2 HOH HOH . G 5 HOH A 75 775 306 HOH HOH . G 5 HOH A 76 776 258 HOH HOH . G 5 HOH A 77 777 172 HOH HOH . G 5 HOH A 78 778 308 HOH HOH . G 5 HOH A 79 779 63 HOH HOH . G 5 HOH A 80 780 80 HOH HOH . G 5 HOH A 81 781 88 HOH HOH . G 5 HOH A 82 782 253 HOH HOH . G 5 HOH A 83 783 69 HOH HOH . G 5 HOH A 84 784 326 HOH HOH . G 5 HOH A 85 785 42 HOH HOH . G 5 HOH A 86 786 359 HOH HOH . G 5 HOH A 87 787 336 HOH HOH . G 5 HOH A 88 788 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 46.451 -36.742 2.362 1 108.45 ? C1 CIT 602 A 1 HETATM 2 O O1 CIT . . . C 3 46.973 -37.185 1.323 1 103.02 ? O1 CIT 602 A 1 HETATM 3 O O2 CIT . . . C 3 47.053 -36.001 3.162 1 96.41 ? O2 CIT 602 A 1 HETATM 4 C C2 CIT . . . C 3 44.999 -37.107 2.643 1 111.6 ? C2 CIT 602 A 1 HETATM 5 C C3 CIT . . . C 3 44 -36.537 1.626 1 120.14 ? C3 CIT 602 A 1 HETATM 6 O O7 CIT . . . C 3 44.624 -36.556 0.354 1 128.3 ? O7 CIT 602 A 1 HETATM 7 C C4 CIT . . . C 3 43.703 -35.086 2.031 1 109.58 ? C4 CIT 602 A 1 HETATM 8 C C5 CIT . . . C 3 43.165 -34.206 0.915 1 100.06 ? C5 CIT 602 A 1 HETATM 9 O O3 CIT . . . C 3 42.229 -34.64 0.207 1 87.83 ? O3 CIT 602 A 1 HETATM 10 O O4 CIT . . . C 3 43.692 -33.098 0.754 1 89.76 ? O4 CIT 602 A 1 HETATM 11 C C6 CIT . . . C 3 42.675 -37.357 1.56 1 124.71 ? C6 CIT 602 A 1 HETATM 12 O O5 CIT . . . C 3 42.238 -37.688 0.411 1 95.68 ? O5 CIT 602 A 1 HETATM 13 O O6 CIT . . . C 3 42.099 -37.603 2.643 1 115.01 ? O6 CIT 602 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #