data_8GFM # _model_server_result.job_id Dy5EZgePW7CusHmT3Heu2A _model_server_result.datetime_utc '2024-11-25 03:50:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8GFM # _exptl.entry_id 8GFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.27 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-AMINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFM _cell.length_a 178.064 _cell.length_b 178.064 _cell.length_c 178.064 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.16 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H18 N2 O7' _chem_comp.formula_weight 290.27 _chem_comp.id 4AM _chem_comp.mon_nstd_flag . _chem_comp.name '4-AMINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 4-amino-Neu5Ac2en # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A 4AM doub 1 n n C1 O1B 4AM sing 2 n n C1 C2 4AM sing 3 n n O1B HOB1 4AM sing 4 n n C2 C3 4AM doub 5 n n C2 O6 4AM sing 6 n n C3 C4 4AM sing 7 n n C3 H3 4AM sing 8 n n C4 N4 4AM sing 9 n n C4 C5 4AM sing 10 n n C4 H4 4AM sing 11 n n N4 HN41 4AM sing 12 n n N4 HN42 4AM sing 13 n n C5 N5 4AM sing 14 n n C5 C6 4AM sing 15 n n C5 H5 4AM sing 16 n n N5 C10 4AM sing 17 n n N5 HN5 4AM sing 18 n n C10 O10 4AM doub 19 n n C10 C11 4AM sing 20 n n C11 H111 4AM sing 21 n n C11 H112 4AM sing 22 n n C11 H113 4AM sing 23 n n C6 O6 4AM sing 24 n n C6 C7 4AM sing 25 n n C6 H6 4AM sing 26 n n C7 O7 4AM sing 27 n n C7 C8 4AM sing 28 n n C7 H7 4AM sing 29 n n O7 HO7 4AM sing 30 n n C8 O8 4AM sing 31 n n C8 C9 4AM sing 32 n n C8 H8 4AM sing 33 n n O8 HO8 4AM sing 34 n n C9 O9 4AM sing 35 n n C9 H91 4AM sing 36 n n C9 H92 4AM sing 37 n n O9 HO9 4AM sing 38 n n # _atom_sites.entry_id 8GFM _atom_sites.fract_transf_matrix[1][1] 0.005616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4AM A 1 601 1 4AM UNZ . C 3 CIT A 1 602 2 CIT CIT . D 4 HOH A 1 701 330 HOH HOH . D 4 HOH A 2 702 215 HOH HOH . D 4 HOH A 3 703 331 HOH HOH . D 4 HOH A 4 704 365 HOH HOH . D 4 HOH A 5 705 310 HOH HOH . D 4 HOH A 6 706 134 HOH HOH . D 4 HOH A 7 707 116 HOH HOH . D 4 HOH A 8 708 82 HOH HOH . D 4 HOH A 9 709 337 HOH HOH . D 4 HOH A 10 710 100 HOH HOH . D 4 HOH A 11 711 288 HOH HOH . D 4 HOH A 12 712 61 HOH HOH . D 4 HOH A 13 713 85 HOH HOH . D 4 HOH A 14 714 142 HOH HOH . D 4 HOH A 15 715 4 HOH HOH . D 4 HOH A 16 716 294 HOH HOH . D 4 HOH A 17 717 295 HOH HOH . D 4 HOH A 18 718 161 HOH HOH . D 4 HOH A 19 719 163 HOH HOH . D 4 HOH A 20 720 48 HOH HOH . D 4 HOH A 21 721 60 HOH HOH . D 4 HOH A 22 722 68 HOH HOH . D 4 HOH A 23 723 338 HOH HOH . D 4 HOH A 24 724 256 HOH HOH . D 4 HOH A 25 725 107 HOH HOH . D 4 HOH A 26 726 37 HOH HOH . D 4 HOH A 27 727 96 HOH HOH . D 4 HOH A 28 728 360 HOH HOH . D 4 HOH A 29 729 335 HOH HOH . D 4 HOH A 30 730 322 HOH HOH . D 4 HOH A 31 731 72 HOH HOH . D 4 HOH A 32 732 341 HOH HOH . D 4 HOH A 33 733 301 HOH HOH . D 4 HOH A 34 734 324 HOH HOH . D 4 HOH A 35 735 1 HOH HOH . D 4 HOH A 36 736 126 HOH HOH . D 4 HOH A 37 737 344 HOH HOH . D 4 HOH A 38 738 125 HOH HOH . D 4 HOH A 39 739 188 HOH HOH . D 4 HOH A 40 740 12 HOH HOH . D 4 HOH A 41 741 13 HOH HOH . D 4 HOH A 42 742 175 HOH HOH . D 4 HOH A 43 743 348 HOH HOH . D 4 HOH A 44 744 353 HOH HOH . D 4 HOH A 45 745 121 HOH HOH . D 4 HOH A 46 746 112 HOH HOH . D 4 HOH A 47 747 94 HOH HOH . D 4 HOH A 48 748 202 HOH HOH . D 4 HOH A 49 749 50 HOH HOH . D 4 HOH A 50 750 266 HOH HOH . D 4 HOH A 51 751 313 HOH HOH . D 4 HOH A 52 752 76 HOH HOH . D 4 HOH A 53 753 91 HOH HOH . D 4 HOH A 54 754 289 HOH HOH . D 4 HOH A 55 755 314 HOH HOH . D 4 HOH A 56 756 109 HOH HOH . D 4 HOH A 57 757 355 HOH HOH . D 4 HOH A 58 758 73 HOH HOH . D 4 HOH A 59 759 166 HOH HOH . D 4 HOH A 60 760 147 HOH HOH . D 4 HOH A 61 761 77 HOH HOH . D 4 HOH A 62 762 49 HOH HOH . D 4 HOH A 63 763 58 HOH HOH . D 4 HOH A 64 764 53 HOH HOH . D 4 HOH A 65 765 342 HOH HOH . D 4 HOH A 66 766 86 HOH HOH . D 4 HOH A 67 767 186 HOH HOH . D 4 HOH A 68 768 291 HOH HOH . D 4 HOH A 69 769 106 HOH HOH . D 4 HOH A 70 770 97 HOH HOH . D 4 HOH A 71 771 293 HOH HOH . D 4 HOH A 72 772 65 HOH HOH . D 4 HOH A 73 773 158 HOH HOH . D 4 HOH A 74 774 67 HOH HOH . D 4 HOH A 75 775 299 HOH HOH . D 4 HOH A 76 776 119 HOH HOH . D 4 HOH A 77 777 51 HOH HOH . D 4 HOH A 78 778 129 HOH HOH . D 4 HOH A 79 779 328 HOH HOH . D 4 HOH A 80 780 334 HOH HOH . D 4 HOH A 81 781 38 HOH HOH . D 4 HOH A 82 782 99 HOH HOH . D 4 HOH A 83 783 124 HOH HOH . D 4 HOH A 84 784 273 HOH HOH . D 4 HOH A 85 785 146 HOH HOH . D 4 HOH A 86 786 362 HOH HOH . D 4 HOH A 87 787 64 HOH HOH . D 4 HOH A 88 788 87 HOH HOH . D 4 HOH A 89 789 333 HOH HOH . D 4 HOH A 90 790 133 HOH HOH . D 4 HOH A 91 791 187 HOH HOH . D 4 HOH A 92 792 44 HOH HOH . D 4 HOH A 93 793 16 HOH HOH . D 4 HOH A 94 794 220 HOH HOH . D 4 HOH A 95 795 286 HOH HOH . D 4 HOH A 96 796 139 HOH HOH . D 4 HOH A 97 797 79 HOH HOH . D 4 HOH A 98 798 92 HOH HOH . D 4 HOH A 99 799 105 HOH HOH . D 4 HOH A 100 800 201 HOH HOH . D 4 HOH A 101 801 21 HOH HOH . D 4 HOH A 102 802 59 HOH HOH . D 4 HOH A 103 803 103 HOH HOH . D 4 HOH A 104 804 93 HOH HOH . D 4 HOH A 105 805 90 HOH HOH . D 4 HOH A 106 806 137 HOH HOH . D 4 HOH A 107 807 296 HOH HOH . D 4 HOH A 108 808 298 HOH HOH . D 4 HOH A 109 809 78 HOH HOH . D 4 HOH A 110 810 329 HOH HOH . D 4 HOH A 111 811 192 HOH HOH . D 4 HOH A 112 812 361 HOH HOH . D 4 HOH A 113 813 300 HOH HOH . D 4 HOH A 114 814 181 HOH HOH . D 4 HOH A 115 815 132 HOH HOH . D 4 HOH A 116 816 302 HOH HOH . D 4 HOH A 117 817 164 HOH HOH . D 4 HOH A 118 818 366 HOH HOH . D 4 HOH A 119 819 172 HOH HOH . D 4 HOH A 120 820 81 HOH HOH . D 4 HOH A 121 821 24 HOH HOH . D 4 HOH A 122 822 56 HOH HOH . D 4 HOH A 123 823 2 HOH HOH . D 4 HOH A 124 824 55 HOH HOH . D 4 HOH A 125 825 292 HOH HOH . D 4 HOH A 126 826 317 HOH HOH . D 4 HOH A 127 827 63 HOH HOH . D 4 HOH A 128 828 316 HOH HOH . D 4 HOH A 129 829 98 HOH HOH . D 4 HOH A 130 830 315 HOH HOH . D 4 HOH A 131 831 11 HOH HOH . D 4 HOH A 132 832 52 HOH HOH . D 4 HOH A 133 833 176 HOH HOH . D 4 HOH A 134 834 144 HOH HOH . D 4 HOH A 135 835 3 HOH HOH . D 4 HOH A 136 836 140 HOH HOH . D 4 HOH A 137 837 226 HOH HOH . D 4 HOH A 138 838 15 HOH HOH . D 4 HOH A 139 839 198 HOH HOH . D 4 HOH A 140 840 356 HOH HOH . D 4 HOH A 141 841 145 HOH HOH . D 4 HOH A 142 842 327 HOH HOH . D 4 HOH A 143 843 149 HOH HOH . D 4 HOH A 144 844 306 HOH HOH . D 4 HOH A 145 845 212 HOH HOH . D 4 HOH A 146 846 367 HOH HOH . D 4 HOH A 147 847 297 HOH HOH . D 4 HOH A 148 848 118 HOH HOH . D 4 HOH A 149 849 70 HOH HOH . D 4 HOH A 150 850 152 HOH HOH . D 4 HOH A 151 851 88 HOH HOH . D 4 HOH A 152 852 89 HOH HOH . D 4 HOH A 153 853 309 HOH HOH . D 4 HOH A 154 854 101 HOH HOH . D 4 HOH A 155 855 364 HOH HOH . D 4 HOH A 156 856 268 HOH HOH . D 4 HOH A 157 857 33 HOH HOH . D 4 HOH A 158 858 57 HOH HOH . D 4 HOH A 159 859 350 HOH HOH . D 4 HOH A 160 860 54 HOH HOH . D 4 HOH A 161 861 160 HOH HOH . D 4 HOH A 162 862 253 HOH HOH . D 4 HOH A 163 863 304 HOH HOH . D 4 HOH A 164 864 74 HOH HOH . D 4 HOH A 165 865 312 HOH HOH . D 4 HOH A 166 866 332 HOH HOH . D 4 HOH A 167 867 84 HOH HOH . D 4 HOH A 168 868 83 HOH HOH . D 4 HOH A 169 869 320 HOH HOH . D 4 HOH A 170 870 69 HOH HOH . D 4 HOH A 171 871 368 HOH HOH . D 4 HOH A 172 872 269 HOH HOH . D 4 HOH A 173 873 319 HOH HOH . D 4 HOH A 174 874 123 HOH HOH . D 4 HOH A 175 875 308 HOH HOH . D 4 HOH A 176 876 32 HOH HOH . D 4 HOH A 177 877 326 HOH HOH . D 4 HOH A 178 878 258 HOH HOH . D 4 HOH A 179 879 311 HOH HOH . D 4 HOH A 180 880 363 HOH HOH . D 4 HOH A 181 881 141 HOH HOH . D 4 HOH A 182 882 284 HOH HOH . D 4 HOH A 183 883 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4AM . . . B 2 33.061 68.515 -25.641 1 94.9 ? C1 4AM 601 A 1 HETATM 2 O O1A 4AM . . . B 2 33.621 69.218 -26.503 1 90.98 -1 O1A 4AM 601 A 1 HETATM 3 O O1B 4AM . . . B 2 32.434 68.921 -24.671 1 81.87 ? O1B 4AM 601 A 1 HETATM 4 C C2 4AM . . . B 2 33.13 66.997 -25.788 1 94.75 ? C2 4AM 601 A 1 HETATM 5 C C3 4AM . . . B 2 33.409 66.457 -26.978 1 92.4 ? C3 4AM 601 A 1 HETATM 6 C C4 4AM . . . B 2 33.654 64.979 -27.111 1 84.06 ? C4 4AM 601 A 1 HETATM 7 N N4 4AM . . . B 2 33.318 64.517 -28.492 1 75.66 1 N4 4AM 601 A 1 HETATM 8 C C5 4AM . . . B 2 32.857 64.223 -26.019 1 89.42 ? C5 4AM 601 A 1 HETATM 9 N N5 4AM . . . B 2 32.98 62.763 -26.131 1 75.1 ? N5 4AM 601 A 1 HETATM 10 C C10 4AM . . . B 2 31.922 61.935 -26.086 1 68.74 ? C10 4AM 601 A 1 HETATM 11 O O10 4AM . . . B 2 30.763 62.315 -26.307 1 58.27 ? O10 4AM 601 A 1 HETATM 12 C C11 4AM . . . B 2 32.241 60.514 -25.739 1 63 ? C11 4AM 601 A 1 HETATM 13 C C6 4AM . . . B 2 33.248 64.798 -24.639 1 91.74 ? C6 4AM 601 A 1 HETATM 14 O O6 4AM . . . B 2 32.859 66.218 -24.622 1 95.63 ? O6 4AM 601 A 1 HETATM 15 C C7 4AM . . . B 2 32.626 64.084 -23.426 1 88.89 ? C7 4AM 601 A 1 HETATM 16 O O7 4AM . . . B 2 31.201 64.127 -23.563 1 66.73 ? O7 4AM 601 A 1 HETATM 17 C C8 4AM . . . B 2 33.011 64.495 -21.956 1 92.3 ? C8 4AM 601 A 1 HETATM 18 O O8 4AM . . . B 2 34.364 64.068 -21.627 1 73.87 ? O8 4AM 601 A 1 HETATM 19 C C9 4AM . . . B 2 32.071 63.89 -20.921 1 96.81 ? C9 4AM 601 A 1 HETATM 20 O O9 4AM . . . B 2 31.873 64.696 -19.757 1 90.98 ? O9 4AM 601 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #