data_8GFQ # _model_server_result.job_id IOvtPwot9ZhybcE4rR7fYw _model_server_result.datetime_utc '2024-10-19 14:15:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8GFQ # _exptl.entry_id 8GFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.27 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '9-AMINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFQ _cell.length_a 176.669 _cell.length_b 176.669 _cell.length_c 176.669 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.071 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H18 N2 O7' _chem_comp.formula_weight 290.27 _chem_comp.id 9AM _chem_comp.mon_nstd_flag . _chem_comp.name '9-AMINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 9AM sing 1 n n C1 O1A 9AM doub 2 n n C1 O1B 9AM sing 3 n n C2 C3 9AM doub 4 n n C2 O6 9AM sing 5 n n C3 C4 9AM sing 6 n n C3 H3 9AM sing 7 n n C4 C5 9AM sing 8 n n C4 O4 9AM sing 9 n n C4 H4 9AM sing 10 n n C5 C6 9AM sing 11 n n C5 N5 9AM sing 12 n n C5 H5 9AM sing 13 n n C6 C7 9AM sing 14 n n C6 O6 9AM sing 15 n n C6 H6 9AM sing 16 n n C7 C8 9AM sing 17 n n C7 O7 9AM sing 18 n n C7 H7 9AM sing 19 n n C8 C9 9AM sing 20 n n C8 O8 9AM sing 21 n n C8 H8 9AM sing 22 n n C9 N9 9AM sing 23 n n C9 H91 9AM sing 24 n n C9 H92 9AM sing 25 n n C10 C11 9AM sing 26 n n C10 N5 9AM sing 27 n n C10 O10 9AM doub 28 n n C11 H111 9AM sing 29 n n C11 H112 9AM sing 30 n n C11 H113 9AM sing 31 n n N5 HN5 9AM sing 32 n n O1B HOB1 9AM sing 33 n n O4 HO4 9AM sing 34 n n O7 HO7 9AM sing 35 n n O8 HO8 9AM sing 36 n n N9 HN91 9AM sing 37 n n N9 HN92 9AM sing 38 n n # _atom_sites.entry_id 8GFQ _atom_sites.fract_transf_matrix[1][1] 0.00566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9AM A 1 601 1 9AM UNL . C 3 CIT A 1 602 2 CIT CIT . D 4 PGE A 1 603 3 PGE PGE . E 5 DMS A 1 604 4 DMS DMS . F 5 DMS A 1 605 5 DMS DMS . G 6 HOH A 1 701 216 HOH HOH . G 6 HOH A 2 702 196 HOH HOH . G 6 HOH A 3 703 185 HOH HOH . G 6 HOH A 4 704 198 HOH HOH . G 6 HOH A 5 705 17 HOH HOH . G 6 HOH A 6 706 48 HOH HOH . G 6 HOH A 7 707 181 HOH HOH . G 6 HOH A 8 708 88 HOH HOH . G 6 HOH A 9 709 20 HOH HOH . G 6 HOH A 10 710 165 HOH HOH . G 6 HOH A 11 711 100 HOH HOH . G 6 HOH A 12 712 21 HOH HOH . G 6 HOH A 13 713 210 HOH HOH . G 6 HOH A 14 714 73 HOH HOH . G 6 HOH A 15 715 162 HOH HOH . G 6 HOH A 16 716 57 HOH HOH . G 6 HOH A 17 717 39 HOH HOH . G 6 HOH A 18 718 200 HOH HOH . G 6 HOH A 19 719 127 HOH HOH . G 6 HOH A 20 720 52 HOH HOH . G 6 HOH A 21 721 30 HOH HOH . G 6 HOH A 22 722 86 HOH HOH . G 6 HOH A 23 723 50 HOH HOH . G 6 HOH A 24 724 35 HOH HOH . G 6 HOH A 25 725 213 HOH HOH . G 6 HOH A 26 726 28 HOH HOH . G 6 HOH A 27 727 131 HOH HOH . G 6 HOH A 28 728 170 HOH HOH . G 6 HOH A 29 729 190 HOH HOH . G 6 HOH A 30 730 6 HOH HOH . G 6 HOH A 31 731 25 HOH HOH . G 6 HOH A 32 732 205 HOH HOH . G 6 HOH A 33 733 80 HOH HOH . G 6 HOH A 34 734 112 HOH HOH . G 6 HOH A 35 735 224 HOH HOH . G 6 HOH A 36 736 26 HOH HOH . G 6 HOH A 37 737 150 HOH HOH . G 6 HOH A 38 738 187 HOH HOH . G 6 HOH A 39 739 36 HOH HOH . G 6 HOH A 40 740 232 HOH HOH . G 6 HOH A 41 741 121 HOH HOH . G 6 HOH A 42 742 191 HOH HOH . G 6 HOH A 43 743 78 HOH HOH . G 6 HOH A 44 744 113 HOH HOH . G 6 HOH A 45 745 222 HOH HOH . G 6 HOH A 46 746 10 HOH HOH . G 6 HOH A 47 747 8 HOH HOH . G 6 HOH A 48 748 44 HOH HOH . G 6 HOH A 49 749 72 HOH HOH . G 6 HOH A 50 750 124 HOH HOH . G 6 HOH A 51 751 33 HOH HOH . G 6 HOH A 52 752 51 HOH HOH . G 6 HOH A 53 753 59 HOH HOH . G 6 HOH A 54 754 69 HOH HOH . G 6 HOH A 55 755 102 HOH HOH . G 6 HOH A 56 756 18 HOH HOH . G 6 HOH A 57 757 60 HOH HOH . G 6 HOH A 58 758 29 HOH HOH . G 6 HOH A 59 759 195 HOH HOH . G 6 HOH A 60 760 218 HOH HOH . G 6 HOH A 61 761 114 HOH HOH . G 6 HOH A 62 762 4 HOH HOH . G 6 HOH A 63 763 221 HOH HOH . G 6 HOH A 64 764 182 HOH HOH . G 6 HOH A 65 765 67 HOH HOH . G 6 HOH A 66 766 116 HOH HOH . G 6 HOH A 67 767 56 HOH HOH . G 6 HOH A 68 768 119 HOH HOH . G 6 HOH A 69 769 99 HOH HOH . G 6 HOH A 70 770 43 HOH HOH . G 6 HOH A 71 771 193 HOH HOH . G 6 HOH A 72 772 38 HOH HOH . G 6 HOH A 73 773 101 HOH HOH . G 6 HOH A 74 774 16 HOH HOH . G 6 HOH A 75 775 68 HOH HOH . G 6 HOH A 76 776 183 HOH HOH . G 6 HOH A 77 777 22 HOH HOH . G 6 HOH A 78 778 147 HOH HOH . G 6 HOH A 79 779 49 HOH HOH . G 6 HOH A 80 780 47 HOH HOH . G 6 HOH A 81 781 118 HOH HOH . G 6 HOH A 82 782 84 HOH HOH . G 6 HOH A 83 783 53 HOH HOH . G 6 HOH A 84 784 46 HOH HOH . G 6 HOH A 85 785 192 HOH HOH . G 6 HOH A 86 786 90 HOH HOH . G 6 HOH A 87 787 188 HOH HOH . G 6 HOH A 88 788 42 HOH HOH . G 6 HOH A 89 789 103 HOH HOH . G 6 HOH A 90 790 206 HOH HOH . G 6 HOH A 91 791 11 HOH HOH . G 6 HOH A 92 792 1 HOH HOH . G 6 HOH A 93 793 125 HOH HOH . G 6 HOH A 94 794 76 HOH HOH . G 6 HOH A 95 795 19 HOH HOH . G 6 HOH A 96 796 58 HOH HOH . G 6 HOH A 97 797 82 HOH HOH . G 6 HOH A 98 798 13 HOH HOH . G 6 HOH A 99 799 157 HOH HOH . G 6 HOH A 100 800 89 HOH HOH . G 6 HOH A 101 801 214 HOH HOH . G 6 HOH A 102 802 54 HOH HOH . G 6 HOH A 103 803 55 HOH HOH . G 6 HOH A 104 804 32 HOH HOH . G 6 HOH A 105 805 65 HOH HOH . G 6 HOH A 106 806 227 HOH HOH . G 6 HOH A 107 807 109 HOH HOH . G 6 HOH A 108 808 105 HOH HOH . G 6 HOH A 109 809 7 HOH HOH . G 6 HOH A 110 810 2 HOH HOH . G 6 HOH A 111 811 199 HOH HOH . G 6 HOH A 112 812 83 HOH HOH . G 6 HOH A 113 813 201 HOH HOH . G 6 HOH A 114 814 61 HOH HOH . G 6 HOH A 115 815 12 HOH HOH . G 6 HOH A 116 816 77 HOH HOH . G 6 HOH A 117 817 85 HOH HOH . G 6 HOH A 118 818 62 HOH HOH . G 6 HOH A 119 819 97 HOH HOH . G 6 HOH A 120 820 156 HOH HOH . G 6 HOH A 121 821 130 HOH HOH . G 6 HOH A 122 822 34 HOH HOH . G 6 HOH A 123 823 41 HOH HOH . G 6 HOH A 124 824 14 HOH HOH . G 6 HOH A 125 825 230 HOH HOH . G 6 HOH A 126 826 95 HOH HOH . G 6 HOH A 127 827 126 HOH HOH . G 6 HOH A 128 828 64 HOH HOH . G 6 HOH A 129 829 98 HOH HOH . G 6 HOH A 130 830 207 HOH HOH . G 6 HOH A 131 831 104 HOH HOH . G 6 HOH A 132 832 31 HOH HOH . G 6 HOH A 133 833 87 HOH HOH . G 6 HOH A 134 834 115 HOH HOH . G 6 HOH A 135 835 71 HOH HOH . G 6 HOH A 136 836 138 HOH HOH . G 6 HOH A 137 837 81 HOH HOH . G 6 HOH A 138 838 168 HOH HOH . G 6 HOH A 139 839 24 HOH HOH . G 6 HOH A 140 840 197 HOH HOH . G 6 HOH A 141 841 184 HOH HOH . G 6 HOH A 142 842 219 HOH HOH . G 6 HOH A 143 843 23 HOH HOH . G 6 HOH A 144 844 202 HOH HOH . G 6 HOH A 145 845 172 HOH HOH . G 6 HOH A 146 846 203 HOH HOH . G 6 HOH A 147 847 141 HOH HOH . G 6 HOH A 148 848 75 HOH HOH . G 6 HOH A 149 849 161 HOH HOH . G 6 HOH A 150 850 120 HOH HOH . G 6 HOH A 151 851 79 HOH HOH . G 6 HOH A 152 852 9 HOH HOH . G 6 HOH A 153 853 45 HOH HOH . G 6 HOH A 154 854 228 HOH HOH . G 6 HOH A 155 855 70 HOH HOH . G 6 HOH A 156 856 204 HOH HOH . G 6 HOH A 157 857 92 HOH HOH . G 6 HOH A 158 858 37 HOH HOH . G 6 HOH A 159 859 211 HOH HOH . G 6 HOH A 160 860 208 HOH HOH . G 6 HOH A 161 861 189 HOH HOH . G 6 HOH A 162 862 94 HOH HOH . G 6 HOH A 163 863 142 HOH HOH . G 6 HOH A 164 864 194 HOH HOH . G 6 HOH A 165 865 154 HOH HOH . G 6 HOH A 166 866 226 HOH HOH . G 6 HOH A 167 867 135 HOH HOH . G 6 HOH A 168 868 215 HOH HOH . G 6 HOH A 169 869 129 HOH HOH . G 6 HOH A 170 870 217 HOH HOH . G 6 HOH A 171 871 229 HOH HOH . G 6 HOH A 172 872 176 HOH HOH . G 6 HOH A 173 873 225 HOH HOH . G 6 HOH A 174 874 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9AM . . . B 2 -67.63 32.278 -25.117 1 75.96 ? C1 9AM 601 A 1 HETATM 2 C C2 9AM . . . B 2 -66.159 32.576 -25.252 1 68.58 ? C2 9AM 601 A 1 HETATM 3 C C3 9AM . . . B 2 -65.677 33.221 -26.316 1 65.47 ? C3 9AM 601 A 1 HETATM 4 C C4 9AM . . . B 2 -64.203 33.281 -26.581 1 65.15 ? C4 9AM 601 A 1 HETATM 5 C C5 9AM . . . B 2 -63.446 32.415 -25.563 1 62.44 ? C5 9AM 601 A 1 HETATM 6 C C6 9AM . . . B 2 -64.004 32.688 -24.162 1 63.18 ? C6 9AM 601 A 1 HETATM 7 C C7 9AM . . . B 2 -63.283 31.975 -23.021 1 64.6 ? C7 9AM 601 A 1 HETATM 8 C C8 9AM . . . B 2 -63.859 32.269 -21.617 1 63.27 ? C8 9AM 601 A 1 HETATM 9 C C9 9AM . . . B 2 -63.215 31.493 -20.484 1 59.47 ? C9 9AM 601 A 1 HETATM 10 C C10 9AM . . . B 2 -61.11 31.651 -25.692 1 55.1 ? C10 9AM 601 A 1 HETATM 11 C C11 9AM . . . B 2 -59.679 32.09 -25.722 1 50.28 ? C11 9AM 601 A 1 HETATM 12 N N5 9AM . . . B 2 -62.008 32.636 -25.627 1 59.45 ? N5 9AM 601 A 1 HETATM 13 O O1A 9AM . . . B 2 -68.409 33.042 -25.689 1 72.52 ? O1A 9AM 601 A 1 HETATM 14 O O1B 9AM . . . B 2 -67.926 31.281 -24.469 1 69.65 -1 O1B 9AM 601 A 1 HETATM 15 O O4 9AM . . . B 2 -63.878 32.896 -27.918 1 63.88 ? O4 9AM 601 A 1 HETATM 16 O O6 9AM . . . B 2 -65.373 32.174 -24.169 1 64.31 ? O6 9AM 601 A 1 HETATM 17 O O7 9AM . . . B 2 -63.255 30.565 -23.26 1 62.97 ? O7 9AM 601 A 1 HETATM 18 O O8 9AM . . . B 2 -63.792 33.676 -21.332 1 60.74 ? O8 9AM 601 A 1 HETATM 19 N N9 9AM . . . B 2 -63.821 31.831 -19.171 1 61.21 ? N9 9AM 601 A 1 HETATM 20 O O10 9AM . . . B 2 -61.437 30.468 -25.728 1 53.9 ? O10 9AM 601 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 20 #