data_8GFR # _model_server_result.job_id GCiaiPGbD31P5_1oqEBAFg _model_server_result.datetime_utc '2025-01-29 06:14:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8GFR # _exptl.entry_id 8GFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 662.883 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(1S)-1-cyano-2-[(3S)-2-oxopyrrolidin-3-yl]ethyl}-6,6-dimethyl-3-[3-methyl-N-({1-[(2-methylpropane-2-sulfonyl)methyl]cyclohexyl}carbamoyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.45 _cell.angle_gamma 90 _cell.entry_id 8GFR _cell.length_a 52.398 _cell.length_b 81.21 _cell.length_c 91.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 52.398 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H54 N6 O6 S' _chem_comp.formula_weight 662.883 _chem_comp.id ZGO _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(1S)-1-cyano-2-[(3S)-2-oxopyrrolidin-3-yl]ethyl}-6,6-dimethyl-3-[3-methyl-N-({1-[(2-methylpropane-2-sulfonyl)methyl]cyclohexyl}carbamoyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O44 C27 ZGO doub 376 n n C16 C17 ZGO sing 377 n n C16 C15 ZGO sing 378 n n C27 N37 ZGO sing 379 n n C27 C31 ZGO sing 380 n n C17 C18 ZGO sing 381 n n N37 C25 ZGO sing 382 n n C26 C31 ZGO sing 383 n n C26 C1 ZGO sing 384 n n C15 C14 ZGO sing 385 n n C31 C24 ZGO sing 386 n n C18 C13 ZGO sing 387 n n N38 C9 ZGO trip 388 n n C9 C1 ZGO sing 389 n n C1 N36 ZGO sing 390 n n N36 C32 ZGO sing 391 n n C25 C24 ZGO sing 392 n n O40 C5 ZGO doub 393 n n C14 C13 ZGO sing 394 n n C12 C10 ZGO sing 395 n n N35 C13 ZGO sing 396 n n N35 C8 ZGO sing 397 n n C13 C19 ZGO sing 398 n n C33 C32 ZGO sing 399 n n C33 C4 ZGO sing 400 n n C33 N39 ZGO sing 401 n n C32 O45 ZGO doub 402 n n C5 N39 ZGO sing 403 n n C5 C6 ZGO sing 404 n n N34 C8 ZGO sing 405 n n N34 C6 ZGO sing 406 n n C30 C7 ZGO sing 407 n n C10 C4 ZGO sing 408 n n C10 C11 ZGO sing 409 n n C10 C3 ZGO sing 410 n n C4 C3 ZGO sing 411 n n C8 O41 ZGO doub 412 n n N39 C2 ZGO sing 413 n n O43 S46 ZGO doub 414 n n C6 C7 ZGO sing 415 n n C19 S46 ZGO sing 416 n n O42 S46 ZGO doub 417 n n S46 C20 ZGO sing 418 n n C7 C29 ZGO sing 419 n n C7 C28 ZGO sing 420 n n C3 C2 ZGO sing 421 n n C20 C21 ZGO sing 422 n n C20 C22 ZGO sing 423 n n C20 C23 ZGO sing 424 n n C11 H1 ZGO sing 425 n n C11 H2 ZGO sing 426 n n C11 H3 ZGO sing 427 n n C12 H4 ZGO sing 428 n n C12 H5 ZGO sing 429 n n C12 H6 ZGO sing 430 n n C14 H7 ZGO sing 431 n n C14 H8 ZGO sing 432 n n C15 H9 ZGO sing 433 n n C15 H10 ZGO sing 434 n n C16 H11 ZGO sing 435 n n C16 H12 ZGO sing 436 n n C18 H13 ZGO sing 437 n n C18 H14 ZGO sing 438 n n C21 H15 ZGO sing 439 n n C21 H16 ZGO sing 440 n n C21 H17 ZGO sing 441 n n C22 H18 ZGO sing 442 n n C22 H19 ZGO sing 443 n n C22 H20 ZGO sing 444 n n C23 H21 ZGO sing 445 n n C23 H22 ZGO sing 446 n n C23 H23 ZGO sing 447 n n C24 H24 ZGO sing 448 n n C24 H25 ZGO sing 449 n n C25 H26 ZGO sing 450 n n C25 H27 ZGO sing 451 n n C26 H28 ZGO sing 452 n n C26 H29 ZGO sing 453 n n C30 H30 ZGO sing 454 n n C30 H31 ZGO sing 455 n n C30 H32 ZGO sing 456 n n C31 H33 ZGO sing 457 n n C33 H34 ZGO sing 458 n n C1 H35 ZGO sing 459 n n C17 H36 ZGO sing 460 n n C17 H37 ZGO sing 461 n n C19 H38 ZGO sing 462 n n C19 H39 ZGO sing 463 n n C2 H40 ZGO sing 464 n n C2 H41 ZGO sing 465 n n C28 H42 ZGO sing 466 n n C28 H43 ZGO sing 467 n n C28 H44 ZGO sing 468 n n C29 H45 ZGO sing 469 n n C29 H46 ZGO sing 470 n n C29 H47 ZGO sing 471 n n C3 H48 ZGO sing 472 n n C4 H49 ZGO sing 473 n n C6 H50 ZGO sing 474 n n N34 H51 ZGO sing 475 n n N35 H52 ZGO sing 476 n n N36 H53 ZGO sing 477 n n N37 H54 ZGO sing 478 n n # _atom_sites.entry_id 8GFR _atom_sites.fract_transf_matrix[1][1] 0.019085 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001821 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZGO A 1 401 401 ZGO NBH . C 3 HOH A 1 501 93 HOH HOH . C 3 HOH A 2 502 24 HOH HOH . C 3 HOH A 3 503 92 HOH HOH . C 3 HOH A 4 504 26 HOH HOH . C 3 HOH A 5 505 94 HOH HOH . C 3 HOH A 6 506 10 HOH HOH . C 3 HOH A 7 507 58 HOH HOH . C 3 HOH A 8 508 69 HOH HOH . C 3 HOH A 9 509 60 HOH HOH . C 3 HOH A 10 510 28 HOH HOH . C 3 HOH A 11 511 2 HOH HOH . C 3 HOH A 12 512 97 HOH HOH . C 3 HOH A 13 513 48 HOH HOH . C 3 HOH A 14 514 12 HOH HOH . C 3 HOH A 15 515 31 HOH HOH . C 3 HOH A 16 516 27 HOH HOH . C 3 HOH A 17 517 32 HOH HOH . C 3 HOH A 18 518 89 HOH HOH . C 3 HOH A 19 519 3 HOH HOH . C 3 HOH A 20 520 14 HOH HOH . C 3 HOH A 21 521 80 HOH HOH . C 3 HOH A 22 522 23 HOH HOH . C 3 HOH A 23 523 6 HOH HOH . C 3 HOH A 24 524 8 HOH HOH . C 3 HOH A 25 525 19 HOH HOH . C 3 HOH A 26 526 83 HOH HOH . C 3 HOH A 27 527 18 HOH HOH . C 3 HOH A 28 528 22 HOH HOH . C 3 HOH A 29 529 21 HOH HOH . C 3 HOH A 30 530 4 HOH HOH . C 3 HOH A 31 531 86 HOH HOH . C 3 HOH A 32 532 16 HOH HOH . C 3 HOH A 33 533 1 HOH HOH . C 3 HOH A 34 534 34 HOH HOH . C 3 HOH A 35 535 49 HOH HOH . C 3 HOH A 36 536 79 HOH HOH . C 3 HOH A 37 537 66 HOH HOH . C 3 HOH A 38 538 72 HOH HOH . C 3 HOH A 39 539 67 HOH HOH . C 3 HOH A 40 540 76 HOH HOH . C 3 HOH A 41 541 50 HOH HOH . C 3 HOH A 42 542 82 HOH HOH . C 3 HOH A 43 543 38 HOH HOH . C 3 HOH A 44 544 87 HOH HOH . C 3 HOH A 45 545 17 HOH HOH . C 3 HOH A 46 546 13 HOH HOH . C 3 HOH A 47 547 75 HOH HOH . C 3 HOH A 48 548 57 HOH HOH . C 3 HOH A 49 549 15 HOH HOH . C 3 HOH A 50 550 52 HOH HOH . C 3 HOH A 51 551 90 HOH HOH . C 3 HOH A 52 552 11 HOH HOH . C 3 HOH A 53 553 47 HOH HOH . C 3 HOH A 54 554 42 HOH HOH . C 3 HOH A 55 555 88 HOH HOH . C 3 HOH A 56 556 44 HOH HOH . C 3 HOH A 57 557 74 HOH HOH . C 3 HOH A 58 558 56 HOH HOH . C 3 HOH A 59 559 25 HOH HOH . C 3 HOH A 60 560 36 HOH HOH . C 3 HOH A 61 561 30 HOH HOH . C 3 HOH A 62 562 40 HOH HOH . C 3 HOH A 63 563 33 HOH HOH . C 3 HOH A 64 564 37 HOH HOH . C 3 HOH A 65 565 35 HOH HOH . C 3 HOH A 66 566 63 HOH HOH . C 3 HOH A 67 567 5 HOH HOH . C 3 HOH A 68 568 64 HOH HOH . C 3 HOH A 69 569 78 HOH HOH . C 3 HOH A 70 570 62 HOH HOH . C 3 HOH A 71 571 7 HOH HOH . C 3 HOH A 72 572 29 HOH HOH . C 3 HOH A 73 573 55 HOH HOH . C 3 HOH A 74 574 95 HOH HOH . C 3 HOH A 75 575 45 HOH HOH . C 3 HOH A 76 576 51 HOH HOH . C 3 HOH A 77 577 46 HOH HOH . C 3 HOH A 78 578 43 HOH HOH . C 3 HOH A 79 579 20 HOH HOH . C 3 HOH A 80 580 53 HOH HOH . C 3 HOH A 81 581 41 HOH HOH . C 3 HOH A 82 582 59 HOH HOH . C 3 HOH A 83 583 9 HOH HOH . C 3 HOH A 84 584 85 HOH HOH . C 3 HOH A 85 585 54 HOH HOH . C 3 HOH A 86 586 96 HOH HOH . C 3 HOH A 87 587 84 HOH HOH . C 3 HOH A 88 588 71 HOH HOH . C 3 HOH A 89 589 39 HOH HOH . C 3 HOH A 90 590 91 HOH HOH . C 3 HOH A 91 591 73 HOH HOH . C 3 HOH A 92 592 81 HOH HOH . C 3 HOH A 93 593 77 HOH HOH . C 3 HOH A 94 594 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ZGO . . . B 2 7.104 -0.926 18.745 1 44.3 ? C10 ZGO 401 A 1 HETATM 2 C C11 ZGO . . . B 2 6.141 0.221 19.002 1 36.2 ? C11 ZGO 401 A 1 HETATM 3 C C12 ZGO . . . B 2 6.537 -1.969 17.799 1 37.49 ? C12 ZGO 401 A 1 HETATM 4 C C13 ZGO . . . B 2 6.262 -7.743 17.928 1 52.12 ? C13 ZGO 401 A 1 HETATM 5 C C14 ZGO . . . B 2 5.31 -6.537 17.697 1 52.7 ? C14 ZGO 401 A 1 HETATM 6 C C15 ZGO . . . B 2 5.476 -5.903 16.314 1 39.66 ? C15 ZGO 401 A 1 HETATM 7 C C16 ZGO . . . B 2 5.271 -6.937 15.199 1 45.85 ? C16 ZGO 401 A 1 HETATM 8 C C18 ZGO . . . B 2 6.074 -8.756 16.771 1 51.12 ? C18 ZGO 401 A 1 HETATM 9 C C20 ZGO . . . B 2 6.444 -10.095 21.594 1 60.2 ? C20 ZGO 401 A 1 HETATM 10 C C21 ZGO . . . B 2 6.725 -11.546 21.998 1 60.85 ? C21 ZGO 401 A 1 HETATM 11 C C22 ZGO . . . B 2 5.044 -9.646 22.013 1 57.62 ? C22 ZGO 401 A 1 HETATM 12 C C23 ZGO . . . B 2 7.51 -9.149 22.148 1 58.62 ? C23 ZGO 401 A 1 HETATM 13 C C24 ZGO . . . B 2 14.864 -2.825 17.605 1 36.68 ? C24 ZGO 401 A 1 HETATM 14 C C25 ZGO . . . B 2 15.707 -4.062 17.253 1 37.34 ? C25 ZGO 401 A 1 HETATM 15 C C26 ZGO . . . B 2 13.76 -1.116 15.971 1 35.66 ? C26 ZGO 401 A 1 HETATM 16 C C30 ZGO . . . B 2 12.394 -6.237 18.696 1 37.79 ? C30 ZGO 401 A 1 HETATM 17 C C31 ZGO . . . B 2 14.005 -2.574 16.35 1 35.38 ? C31 ZGO 401 A 1 HETATM 18 C C32 ZGO . . . B 2 10.998 -0.829 18.28 1 43.71 ? C32 ZGO 401 A 1 HETATM 19 C C33 ZGO . . . B 2 9.606 -1.45 18.08 1 38.08 ? C33 ZGO 401 A 1 HETATM 20 C C1 ZGO . . . B 2 13.086 -0.329 17.11 1 35.98 ? C1 ZGO 401 A 1 HETATM 21 C C17 ZGO . . . B 2 6.216 -8.125 15.377 1 46.62 ? C17 ZGO 401 A 1 HETATM 22 C C19 ZGO . . . B 2 5.848 -8.358 19.294 1 57 ? C19 ZGO 401 A 1 HETATM 23 C C2 ZGO . . . B 2 8.595 -2.688 19.962 1 45.67 ? C2 ZGO 401 A 1 HETATM 24 C C27 ZGO . . . B 2 14.734 -3.332 15.244 1 33.88 ? C27 ZGO 401 A 1 HETATM 25 C C28 ZGO . . . B 2 11.369 -6.635 20.947 1 38.84 ? C28 ZGO 401 A 1 HETATM 26 C C29 ZGO . . . B 2 12.39 -4.406 20.41 1 42.41 ? C29 ZGO 401 A 1 HETATM 27 C C3 ZGO . . . B 2 7.98 -1.306 19.921 1 45.28 ? C3 ZGO 401 A 1 HETATM 28 C C4 ZGO . . . B 2 8.576 -0.548 18.756 1 40.75 ? C4 ZGO 401 A 1 HETATM 29 C C5 ZGO . . . B 2 10.314 -3.757 18.441 1 41.8 ? C5 ZGO 401 A 1 HETATM 30 C C6 ZGO . . . B 2 10.232 -5.062 19.248 1 39.92 ? C6 ZGO 401 A 1 HETATM 31 C C7 ZGO . . . B 2 11.589 -5.59 19.839 1 46.41 ? C7 ZGO 401 A 1 HETATM 32 C C8 ZGO . . . B 2 8.238 -6.41 18.769 1 44.47 ? C8 ZGO 401 A 1 HETATM 33 C C9 ZGO . . . B 2 13.464 1.092 17.064 1 35.37 ? C9 ZGO 401 A 1 HETATM 34 N N34 ZGO . . . B 2 9.518 -6.043 18.449 1 47.82 ? N34 ZGO 401 A 1 HETATM 35 N N35 ZGO . . . B 2 7.67 -7.312 17.907 1 43.47 ? N35 ZGO 401 A 1 HETATM 36 N N36 ZGO . . . B 2 11.641 -0.477 17.144 1 30.49 ? N36 ZGO 401 A 1 HETATM 37 N N37 ZGO . . . B 2 15.776 -3.98 15.799 1 32.31 ? N37 ZGO 401 A 1 HETATM 38 N N38 ZGO . . . B 2 13.767 2.211 17.051 1 32.79 ? N38 ZGO 401 A 1 HETATM 39 N N39 ZGO . . . B 2 9.523 -2.725 18.808 1 42.14 ? N39 ZGO 401 A 1 HETATM 40 O O40 ZGO . . . B 2 11.055 -3.678 17.438 1 38.71 ? O40 ZGO 401 A 1 HETATM 41 O O41 ZGO . . . B 2 7.664 -5.949 19.779 1 50.13 ? O41 ZGO 401 A 1 HETATM 42 O O42 ZGO . . . B 2 8.042 -9.905 19.395 1 57.42 ? O42 ZGO 401 A 1 HETATM 43 O O43 ZGO . . . B 2 5.804 -11.067 19.132 1 60.22 ? O43 ZGO 401 A 1 HETATM 44 O O44 ZGO . . . B 2 14.407 -3.367 14.056 1 36.94 ? O44 ZGO 401 A 1 HETATM 45 O O45 ZGO . . . B 2 11.5 -0.703 19.399 1 42.17 ? O45 ZGO 401 A 1 HETATM 46 S S46 ZGO . . . B 2 6.594 -9.955 19.736 1 62.24 ? S46 ZGO 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #