data_8GFS # _model_server_result.job_id wcWOeuGPhDROfPk9LjxPAw _model_server_result.datetime_utc '2024-11-25 04:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8GFS # _exptl.entry_id 8GFS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.215 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R,4S,5S)-2-(acetylamino)-5-carboxy-3,4-dihydroxypiperidinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFS _cell.length_a 178.247 _cell.length_b 178.247 _cell.length_c 178.247 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFS _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 90 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 87 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 105 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 102 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.113 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N2 O5 1' _chem_comp.formula_weight 219.215 _chem_comp.id 3XR _chem_comp.mon_nstd_flag . _chem_comp.name (2S,3R,4S,5S)-2-(acetylamino)-5-carboxy-3,4-dihydroxypiperidinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAD CAK 3XR doub 1 n n OAC CAK 3XR sing 2 n n CAK CAN 3XR sing 3 n n OAE CAL 3XR sing 4 n n CAL CAN 3XR sing 5 n n CAL CAM 3XR sing 6 n n CAN CAG 3XR sing 7 n n CAG NAI 3XR sing 8 n n CAM OAF 3XR sing 9 n n CAM CAO 3XR sing 10 n n CAO NAI 3XR sing 11 n n CAO NAH 3XR sing 12 n n NAH CAJ 3XR sing 13 n n OAB CAJ 3XR doub 14 n n CAJ CAA 3XR sing 15 n n CAA H1 3XR sing 16 n n CAA H2 3XR sing 17 n n CAA H3 3XR sing 18 n n NAH H4 3XR sing 19 n n CAO H5 3XR sing 20 n n NAI H6 3XR sing 21 n n CAG H8 3XR sing 22 n n CAG H9 3XR sing 23 n n CAN H10 3XR sing 24 n n OAC H11 3XR sing 25 n n CAL H12 3XR sing 26 n n OAE H13 3XR sing 27 n n CAM H14 3XR sing 28 n n OAF H15 3XR sing 29 n n NAI H7 3XR sing 30 n n # _atom_sites.entry_id 8GFS _atom_sites.fract_transf_matrix[1][1] 0.00561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3XR A 1 601 1 3XR UNS . C 3 CIT A 1 602 2 CIT CIT . D 4 HOH A 1 701 215 HOH HOH . D 4 HOH A 2 702 310 HOH HOH . D 4 HOH A 3 703 99 HOH HOH . D 4 HOH A 4 704 278 HOH HOH . D 4 HOH A 5 705 330 HOH HOH . D 4 HOH A 6 706 421 HOH HOH . D 4 HOH A 7 707 116 HOH HOH . D 4 HOH A 8 708 343 HOH HOH . D 4 HOH A 9 709 82 HOH HOH . D 4 HOH A 10 710 8 HOH HOH . D 4 HOH A 11 711 107 HOH HOH . D 4 HOH A 12 712 161 HOH HOH . D 4 HOH A 13 713 60 HOH HOH . D 4 HOH A 14 714 85 HOH HOH . D 4 HOH A 15 715 37 HOH HOH . D 4 HOH A 16 716 322 HOH HOH . D 4 HOH A 17 717 434 HOH HOH . D 4 HOH A 18 718 48 HOH HOH . D 4 HOH A 19 719 294 HOH HOH . D 4 HOH A 20 720 100 HOH HOH . D 4 HOH A 21 721 13 HOH HOH . D 4 HOH A 22 722 4 HOH HOH . D 4 HOH A 23 723 210 HOH HOH . D 4 HOH A 24 724 61 HOH HOH . D 4 HOH A 25 725 23 HOH HOH . D 4 HOH A 26 726 197 HOH HOH . D 4 HOH A 27 727 147 HOH HOH . D 4 HOH A 28 728 126 HOH HOH . D 4 HOH A 29 729 337 HOH HOH . D 4 HOH A 30 730 96 HOH HOH . D 4 HOH A 31 731 288 HOH HOH . D 4 HOH A 32 732 331 HOH HOH . D 4 HOH A 33 733 379 HOH HOH . D 4 HOH A 34 734 142 HOH HOH . D 4 HOH A 35 735 125 HOH HOH . D 4 HOH A 36 736 348 HOH HOH . D 4 HOH A 37 737 256 HOH HOH . D 4 HOH A 38 738 134 HOH HOH . D 4 HOH A 39 739 1 HOH HOH . D 4 HOH A 40 740 295 HOH HOH . D 4 HOH A 41 741 365 HOH HOH . D 4 HOH A 42 742 50 HOH HOH . D 4 HOH A 43 743 335 HOH HOH . D 4 HOH A 44 744 91 HOH HOH . D 4 HOH A 45 745 373 HOH HOH . D 4 HOH A 46 746 301 HOH HOH . D 4 HOH A 47 747 121 HOH HOH . D 4 HOH A 48 748 202 HOH HOH . D 4 HOH A 49 749 68 HOH HOH . D 4 HOH A 50 750 364 HOH HOH . D 4 HOH A 51 751 163 HOH HOH . D 4 HOH A 52 752 72 HOH HOH . D 4 HOH A 53 753 109 HOH HOH . D 4 HOH A 54 754 289 HOH HOH . D 4 HOH A 55 755 325 HOH HOH . D 4 HOH A 56 756 64 HOH HOH . D 4 HOH A 57 757 129 HOH HOH . D 4 HOH A 58 758 400 HOH HOH . D 4 HOH A 59 759 361 HOH HOH . D 4 HOH A 60 760 324 HOH HOH . D 4 HOH A 61 761 314 HOH HOH . D 4 HOH A 62 762 405 HOH HOH . D 4 HOH A 63 763 94 HOH HOH . D 4 HOH A 64 764 58 HOH HOH . D 4 HOH A 65 765 124 HOH HOH . D 4 HOH A 66 766 65 HOH HOH . D 4 HOH A 67 767 356 HOH HOH . D 4 HOH A 68 768 273 HOH HOH . D 4 HOH A 69 769 49 HOH HOH . D 4 HOH A 70 770 291 HOH HOH . D 4 HOH A 71 771 342 HOH HOH . D 4 HOH A 72 772 86 HOH HOH . D 4 HOH A 73 773 53 HOH HOH . D 4 HOH A 74 774 90 HOH HOH . D 4 HOH A 75 775 185 HOH HOH . D 4 HOH A 76 776 73 HOH HOH . D 4 HOH A 77 777 164 HOH HOH . D 4 HOH A 78 778 341 HOH HOH . D 4 HOH A 79 779 338 HOH HOH . D 4 HOH A 80 780 427 HOH HOH . D 4 HOH A 81 781 204 HOH HOH . D 4 HOH A 82 782 334 HOH HOH . D 4 HOH A 83 783 333 HOH HOH . D 4 HOH A 84 784 166 HOH HOH . D 4 HOH A 85 785 133 HOH HOH . D 4 HOH A 86 786 419 HOH HOH . D 4 HOH A 87 787 367 HOH HOH . D 4 HOH A 88 788 266 HOH HOH . D 4 HOH A 89 789 146 HOH HOH . D 4 HOH A 90 790 293 HOH HOH . D 4 HOH A 91 791 76 HOH HOH . D 4 HOH A 92 792 97 HOH HOH . D 4 HOH A 93 793 377 HOH HOH . D 4 HOH A 94 794 158 HOH HOH . D 4 HOH A 95 795 103 HOH HOH . D 4 HOH A 96 796 16 HOH HOH . D 4 HOH A 97 797 420 HOH HOH . D 4 HOH A 98 798 51 HOH HOH . D 4 HOH A 99 799 298 HOH HOH . D 4 HOH A 100 800 286 HOH HOH . D 4 HOH A 101 801 409 HOH HOH . D 4 HOH A 102 802 87 HOH HOH . D 4 HOH A 103 803 59 HOH HOH . D 4 HOH A 104 804 79 HOH HOH . D 4 HOH A 105 805 38 HOH HOH . D 4 HOH A 106 806 137 HOH HOH . D 4 HOH A 107 807 300 HOH HOH . D 4 HOH A 108 808 220 HOH HOH . D 4 HOH A 109 809 321 HOH HOH . D 4 HOH A 110 810 105 HOH HOH . D 4 HOH A 111 811 380 HOH HOH . D 4 HOH A 112 812 43 HOH HOH . D 4 HOH A 113 813 358 HOH HOH . D 4 HOH A 114 814 328 HOH HOH . D 4 HOH A 115 815 171 HOH HOH . D 4 HOH A 116 816 395 HOH HOH . D 4 HOH A 117 817 106 HOH HOH . D 4 HOH A 118 818 62 HOH HOH . D 4 HOH A 119 819 172 HOH HOH . D 4 HOH A 120 820 290 HOH HOH . D 4 HOH A 121 821 67 HOH HOH . D 4 HOH A 122 822 77 HOH HOH . D 4 HOH A 123 823 92 HOH HOH . D 4 HOH A 124 824 423 HOH HOH . D 4 HOH A 125 825 313 HOH HOH . D 4 HOH A 126 826 93 HOH HOH . D 4 HOH A 127 827 384 HOH HOH . D 4 HOH A 128 828 199 HOH HOH . D 4 HOH A 129 829 110 HOH HOH . D 4 HOH A 130 830 382 HOH HOH . D 4 HOH A 131 831 368 HOH HOH . D 4 HOH A 132 832 315 HOH HOH . D 4 HOH A 133 833 119 HOH HOH . D 4 HOH A 134 834 78 HOH HOH . D 4 HOH A 135 835 243 HOH HOH . D 4 HOH A 136 836 296 HOH HOH . D 4 HOH A 137 837 181 HOH HOH . D 4 HOH A 138 838 388 HOH HOH . D 4 HOH A 139 839 102 HOH HOH . D 4 HOH A 140 840 302 HOH HOH . D 4 HOH A 141 841 2 HOH HOH . D 4 HOH A 142 842 44 HOH HOH . D 4 HOH A 143 843 303 HOH HOH . D 4 HOH A 144 844 416 HOH HOH . D 4 HOH A 145 845 201 HOH HOH . D 4 HOH A 146 846 269 HOH HOH . D 4 HOH A 147 847 297 HOH HOH . D 4 HOH A 148 848 98 HOH HOH . D 4 HOH A 149 849 198 HOH HOH . D 4 HOH A 150 850 329 HOH HOH . D 4 HOH A 151 851 55 HOH HOH . D 4 HOH A 152 852 149 HOH HOH . D 4 HOH A 153 853 316 HOH HOH . D 4 HOH A 154 854 192 HOH HOH . D 4 HOH A 155 855 425 HOH HOH . D 4 HOH A 156 856 392 HOH HOH . D 4 HOH A 157 857 413 HOH HOH . D 4 HOH A 158 858 369 HOH HOH . D 4 HOH A 159 859 52 HOH HOH . D 4 HOH A 160 860 145 HOH HOH . D 4 HOH A 161 861 14 HOH HOH . D 4 HOH A 162 862 11 HOH HOH . D 4 HOH A 163 863 132 HOH HOH . D 4 HOH A 164 864 178 HOH HOH . D 4 HOH A 165 865 229 HOH HOH . D 4 HOH A 166 866 410 HOH HOH . D 4 HOH A 167 867 15 HOH HOH . D 4 HOH A 168 868 292 HOH HOH . D 4 HOH A 169 869 394 HOH HOH . D 4 HOH A 170 870 176 HOH HOH . D 4 HOH A 171 871 433 HOH HOH . D 4 HOH A 172 872 152 HOH HOH . D 4 HOH A 173 873 88 HOH HOH . D 4 HOH A 174 874 63 HOH HOH . D 4 HOH A 175 875 24 HOH HOH . D 4 HOH A 176 876 375 HOH HOH . D 4 HOH A 177 877 226 HOH HOH . D 4 HOH A 178 878 21 HOH HOH . D 4 HOH A 179 879 385 HOH HOH . D 4 HOH A 180 880 118 HOH HOH . D 4 HOH A 181 881 81 HOH HOH . D 4 HOH A 182 882 350 HOH HOH . D 4 HOH A 183 883 56 HOH HOH . D 4 HOH A 184 884 131 HOH HOH . D 4 HOH A 185 885 370 HOH HOH . D 4 HOH A 186 886 432 HOH HOH . D 4 HOH A 187 887 89 HOH HOH . D 4 HOH A 188 888 327 HOH HOH . D 4 HOH A 189 889 70 HOH HOH . D 4 HOH A 190 890 3 HOH HOH . D 4 HOH A 191 891 257 HOH HOH . D 4 HOH A 192 892 160 HOH HOH . D 4 HOH A 193 893 317 HOH HOH . D 4 HOH A 194 894 140 HOH HOH . D 4 HOH A 195 895 101 HOH HOH . D 4 HOH A 196 896 386 HOH HOH . D 4 HOH A 197 897 428 HOH HOH . D 4 HOH A 198 898 57 HOH HOH . D 4 HOH A 199 899 352 HOH HOH . D 4 HOH A 200 900 33 HOH HOH . D 4 HOH A 201 901 397 HOH HOH . D 4 HOH A 202 902 122 HOH HOH . D 4 HOH A 203 903 309 HOH HOH . D 4 HOH A 204 904 438 HOH HOH . D 4 HOH A 205 905 83 HOH HOH . D 4 HOH A 206 906 398 HOH HOH . D 4 HOH A 207 907 212 HOH HOH . D 4 HOH A 208 908 306 HOH HOH . D 4 HOH A 209 909 84 HOH HOH . D 4 HOH A 210 910 312 HOH HOH . D 4 HOH A 211 911 54 HOH HOH . D 4 HOH A 212 912 253 HOH HOH . D 4 HOH A 213 913 319 HOH HOH . D 4 HOH A 214 914 422 HOH HOH . D 4 HOH A 215 915 332 HOH HOH . D 4 HOH A 216 916 401 HOH HOH . D 4 HOH A 217 917 304 HOH HOH . D 4 HOH A 218 918 69 HOH HOH . D 4 HOH A 219 919 123 HOH HOH . D 4 HOH A 220 920 74 HOH HOH . D 4 HOH A 221 921 144 HOH HOH . D 4 HOH A 222 922 22 HOH HOH . D 4 HOH A 223 923 308 HOH HOH . D 4 HOH A 224 924 326 HOH HOH . D 4 HOH A 225 925 390 HOH HOH . D 4 HOH A 226 926 255 HOH HOH . D 4 HOH A 227 927 32 HOH HOH . D 4 HOH A 228 928 42 HOH HOH . D 4 HOH A 229 929 311 HOH HOH . D 4 HOH A 230 930 371 HOH HOH . D 4 HOH A 231 931 437 HOH HOH . D 4 HOH A 232 932 284 HOH HOH . D 4 HOH A 233 933 408 HOH HOH . D 4 HOH A 234 934 436 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3XR . . . B 2 32.977 60.699 -26.466 1 67.39 ? CAA 3XR 601 A 1 HETATM 2 C CAJ 3XR . . . B 2 32.134 61.847 -26.024 1 65.34 ? CAJ 3XR 601 A 1 HETATM 3 O OAB 3XR . . . B 2 30.917 61.863 -26.19 1 63.89 ? OAB 3XR 601 A 1 HETATM 4 N NAH 3XR . . . B 2 32.811 62.875 -25.48 1 76.8 ? NAH 3XR 601 A 1 HETATM 5 C CAO 3XR . . . B 2 32.169 63.933 -24.71 1 81.24 ? CAO 3XR 601 A 1 HETATM 6 N NAI 3XR . . . B 2 32.011 63.57 -23.287 1 75.33 ? NAI 3XR 601 A 1 HETATM 7 C CAG 3XR . . . B 2 31.437 64.614 -22.406 1 92.52 ? CAG 3XR 601 A 1 HETATM 8 C CAN 3XR . . . B 2 32.129 65.976 -22.563 1 94.77 ? CAN 3XR 601 A 1 HETATM 9 C CAK 3XR . . . B 2 31.575 67.087 -21.644 1 97.09 ? CAK 3XR 601 A 1 HETATM 10 O OAD 3XR . . . B 2 32.093 68.208 -21.723 1 90.35 -1 OAD 3XR 601 A 1 HETATM 11 O OAC 3XR . . . B 2 30.672 66.806 -20.832 1 80.32 ? OAC 3XR 601 A 1 HETATM 12 C CAL 3XR . . . B 2 32.138 66.341 -24.062 1 96.38 ? CAL 3XR 601 A 1 HETATM 13 O OAE 3XR . . . B 2 30.803 66.462 -24.586 1 88.38 ? OAE 3XR 601 A 1 HETATM 14 C CAM 3XR . . . B 2 32.926 65.271 -24.818 1 86.09 ? CAM 3XR 601 A 1 HETATM 15 O OAF 3XR . . . B 2 33.186 65.669 -26.171 1 66.89 ? OAF 3XR 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #