data_8GFX # _model_server_result.job_id KJw0dD4XmYNvF7RPIvFnrA _model_server_result.datetime_utc '2024-11-21 22:24:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8GFX # _exptl.entry_id 8GFX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 209.242 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GFX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 137 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 106 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 222 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 191 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H15 N O3' _chem_comp.formula_weight 209.242 _chem_comp.id G1I _chem_comp.mon_nstd_flag . _chem_comp.name (5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAO NAN G1I sing 83 n n CAH CAG G1I sing 84 n n CAH CAI G1I sing 85 n n NAN CAI G1I sing 86 n n CAG CAE G1I sing 87 n n CAI CAJ G1I sing 88 n n OAK CAD G1I sing 89 n n CAE CAD G1I doub 90 n y CAE CAF G1I sing 91 n y CAJ CAF G1I sing 92 n n CAJ OAM G1I sing 93 n n CAD CAC G1I sing 94 n y CAF CAA G1I doub 95 n y CAC OAL G1I sing 96 n n CAC CAB G1I doub 97 n y CAA CAB G1I sing 98 n y CAA H1 G1I sing 99 n n CAB H2 G1I sing 100 n n CAG H3 G1I sing 101 n n CAG H4 G1I sing 102 n n CAH H5 G1I sing 103 n n CAH H6 G1I sing 104 n n CAI H7 G1I sing 105 n n CAJ H8 G1I sing 106 n n CAO H9 G1I sing 107 n n CAO H10 G1I sing 108 n n CAO H11 G1I sing 109 n n NAN H12 G1I sing 110 n n OAK H14 G1I sing 111 n n OAL H15 G1I sing 112 n n OAM H16 G1I sing 113 n n # _atom_sites.entry_id 8GFX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 401 0 GTP GTP . F 6 G1I R 1 501 0 G1I DRG . G 7 HOH R 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA G1I . . . F 6 139.157 168.503 140.814 1 35.73 ? CAA G1I 501 R 1 HETATM 2 C CAB G1I . . . F 6 139.911 168.188 139.704 1 37.95 ? CAB G1I 501 R 1 HETATM 3 C CAC G1I . . . F 6 140.376 169.18 138.83 1 36.83 ? CAC G1I 501 R 1 HETATM 4 C CAD G1I . . . F 6 140.031 170.551 139.141 1 32.53 ? CAD G1I 501 R 1 HETATM 5 C CAE G1I . . . F 6 139.246 170.856 140.303 1 28.87 ? CAE G1I 501 R 1 HETATM 6 C CAF G1I . . . F 6 138.801 169.822 141.147 1 32.41 ? CAF G1I 501 R 1 HETATM 7 C CAG G1I . . . F 6 138.892 172.313 140.613 1 26.36 ? CAG G1I 501 R 1 HETATM 8 C CAH G1I . . . F 6 138.347 172.64 142.036 1 31.62 ? CAH G1I 501 R 1 HETATM 9 C CAI G1I . . . F 6 138.445 171.501 143.057 1 29.16 ? CAI G1I 501 R 1 HETATM 10 C CAJ G1I . . . F 6 137.965 170.172 142.388 1 32.55 ? CAJ G1I 501 R 1 HETATM 11 C CAO G1I . . . F 6 138.027 173.098 144.918 1 35.55 ? CAO G1I 501 R 1 HETATM 12 N NAN G1I . . . F 6 137.699 171.809 144.296 1 31.02 ? NAN G1I 501 R 1 HETATM 13 O OAK G1I . . . F 6 140.446 171.518 138.346 1 33.12 ? OAK G1I 501 R 1 HETATM 14 O OAL G1I . . . F 6 141.104 168.933 137.746 1 38.13 ? OAL G1I 501 R 1 HETATM 15 O OAM G1I . . . F 6 138.088 169.164 143.336 1 32.76 ? OAM G1I 501 R 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #