data_8GG0 # _model_server_result.job_id AAvQ_n5IL2U68e-yiXI2Sg _model_server_result.datetime_utc '2024-12-29 01:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8GG0 # _exptl.entry_id 8GG0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GG0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 137 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 106 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 222 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 191 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 160 n n PG O2G GTP sing 161 n n PG O3G GTP sing 162 n n PG O3B GTP sing 163 n n O2G HOG2 GTP sing 164 n n O3G HOG3 GTP sing 165 n n O3B PB GTP sing 166 n n PB O1B GTP doub 167 n n PB O2B GTP sing 168 n n PB O3A GTP sing 169 n n O2B HOB2 GTP sing 170 n n O3A PA GTP sing 171 n n PA O1A GTP doub 172 n n PA O2A GTP sing 173 n n PA O5' GTP sing 174 n n O2A HOA2 GTP sing 175 n n O5' C5' GTP sing 176 n n C5' C4' GTP sing 177 n n C5' H5' GTP sing 178 n n C5' "H5''" GTP sing 179 n n C4' O4' GTP sing 180 n n C4' C3' GTP sing 181 n n C4' H4' GTP sing 182 n n O4' C1' GTP sing 183 n n C3' O3' GTP sing 184 n n C3' C2' GTP sing 185 n n C3' H3' GTP sing 186 n n O3' HO3' GTP sing 187 n n C2' O2' GTP sing 188 n n C2' C1' GTP sing 189 n n C2' H2' GTP sing 190 n n O2' HO2' GTP sing 191 n n C1' N9 GTP sing 192 n n C1' H1' GTP sing 193 n n N9 C8 GTP sing 194 n y N9 C4 GTP sing 195 n y C8 N7 GTP doub 196 n y C8 H8 GTP sing 197 n n N7 C5 GTP sing 198 n y C5 C6 GTP sing 199 n n C5 C4 GTP doub 200 n y C6 O6 GTP doub 201 n n C6 N1 GTP sing 202 n n N1 C2 GTP sing 203 n n N1 HN1 GTP sing 204 n n C2 N2 GTP sing 205 n n C2 N3 GTP doub 206 n n N2 HN21 GTP sing 207 n n N2 HN22 GTP sing 208 n n N3 C4 GTP sing 209 n n # _atom_sites.entry_id 8GG0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 401 0 GTP GTP . F 6 G1I R 1 501 0 G1I DRG . G 7 HOH R 1 601 1 HOH HOH . G 7 HOH R 2 602 5 HOH HOH . G 7 HOH R 3 603 2 HOH HOH . G 7 HOH R 4 604 4 HOH HOH . G 7 HOH R 5 605 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 141.596 104.224 117.333 1 139.06 ? PG GTP 401 A 1 HETATM 2 O O1G GTP . . . E 5 142.616 105.024 118.106 1 130.86 ? O1G GTP 401 A 1 HETATM 3 O O2G GTP . . . E 5 140.214 104.708 117.697 1 132.16 ? O2G GTP 401 A 1 HETATM 4 O O3G GTP . . . E 5 141.737 102.765 117.69 1 133.79 ? O3G GTP 401 A 1 HETATM 5 O O3B GTP . . . E 5 141.865 104.464 115.763 1 129.49 ? O3B GTP 401 A 1 HETATM 6 P PB GTP . . . E 5 142.794 103.475 114.893 1 135.98 ? PB GTP 401 A 1 HETATM 7 O O1B GTP . . . E 5 144.241 103.848 115.096 1 133.32 ? O1B GTP 401 A 1 HETATM 8 O O2B GTP . . . E 5 142.559 102.024 115.239 1 133.07 ? O2B GTP 401 A 1 HETATM 9 O O3A GTP . . . E 5 142.321 103.754 113.38 1 132.64 ? O3A GTP 401 A 1 HETATM 10 P PA GTP . . . E 5 143.22 104.567 112.317 1 142.84 ? PA GTP 401 A 1 HETATM 11 O O1A GTP . . . E 5 142.924 106.045 112.385 1 132.42 ? O1A GTP 401 A 1 HETATM 12 O O2A GTP . . . E 5 144.695 104.303 112.499 1 134.86 ? O2A GTP 401 A 1 HETATM 13 O O5' GTP . . . E 5 142.731 103.974 110.906 1 133.06 ? O5' GTP 401 A 1 HETATM 14 C C5' GTP . . . E 5 141.616 103.114 110.852 1 129.16 ? C5' GTP 401 A 1 HETATM 15 C C4' GTP . . . E 5 141.33 102.746 109.404 1 132.5 ? C4' GTP 401 A 1 HETATM 16 O O4' GTP . . . E 5 140.059 103.265 109.076 1 134.14 ? O4' GTP 401 A 1 HETATM 17 C C3' GTP . . . E 5 142.326 103.388 108.455 1 133.24 ? C3' GTP 401 A 1 HETATM 18 O O3' GTP . . . E 5 143.221 102.427 107.948 1 130.96 ? O3' GTP 401 A 1 HETATM 19 C C2' GTP . . . E 5 141.491 103.963 107.332 1 134.34 ? C2' GTP 401 A 1 HETATM 20 O O2' GTP . . . E 5 141.604 103.149 106.188 1 131.95 ? O2' GTP 401 A 1 HETATM 21 C C1' GTP . . . E 5 140.06 103.954 107.843 1 132.91 ? C1' GTP 401 A 1 HETATM 22 N N9 GTP . . . E 5 139.615 105.334 108.099 1 131.41 ? N9 GTP 401 A 1 HETATM 23 C C8 GTP . . . E 5 139.92 106.079 109.208 1 128.37 ? C8 GTP 401 A 1 HETATM 24 N N7 GTP . . . E 5 139.329 107.289 109.091 1 129.44 ? N7 GTP 401 A 1 HETATM 25 C C5 GTP . . . E 5 138.643 107.322 107.928 1 132.55 ? C5 GTP 401 A 1 HETATM 26 C C6 GTP . . . E 5 137.868 108.306 107.331 1 130.97 ? C6 GTP 401 A 1 HETATM 27 O O6 GTP . . . E 5 137.715 109.393 107.884 1 128.73 ? O6 GTP 401 A 1 HETATM 28 N N1 GTP . . . E 5 137.273 108.061 106.112 1 129.63 ? N1 GTP 401 A 1 HETATM 29 C C2 GTP . . . E 5 137.451 106.839 105.496 1 131.09 ? C2 GTP 401 A 1 HETATM 30 N N2 GTP . . . E 5 136.877 106.601 104.321 1 129.2 ? N2 GTP 401 A 1 HETATM 31 N N3 GTP . . . E 5 138.222 105.864 106.096 1 132.55 ? N3 GTP 401 A 1 HETATM 32 C C4 GTP . . . E 5 138.81 106.099 107.293 1 132.09 ? C4 GTP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #