data_8GG7 # _model_server_result.job_id NtOfRgT9pKgTaGUKf4O-2A _model_server_result.datetime_utc '2024-12-29 01:57:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8GG7 # _exptl.entry_id 8GG7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GG7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 160 n n PG O2G GTP sing 161 n n PG O3G GTP sing 162 n n PG O3B GTP sing 163 n n O2G HOG2 GTP sing 164 n n O3G HOG3 GTP sing 165 n n O3B PB GTP sing 166 n n PB O1B GTP doub 167 n n PB O2B GTP sing 168 n n PB O3A GTP sing 169 n n O2B HOB2 GTP sing 170 n n O3A PA GTP sing 171 n n PA O1A GTP doub 172 n n PA O2A GTP sing 173 n n PA O5' GTP sing 174 n n O2A HOA2 GTP sing 175 n n O5' C5' GTP sing 176 n n C5' C4' GTP sing 177 n n C5' H5' GTP sing 178 n n C5' "H5''" GTP sing 179 n n C4' O4' GTP sing 180 n n C4' C3' GTP sing 181 n n C4' H4' GTP sing 182 n n O4' C1' GTP sing 183 n n C3' O3' GTP sing 184 n n C3' C2' GTP sing 185 n n C3' H3' GTP sing 186 n n O3' HO3' GTP sing 187 n n C2' O2' GTP sing 188 n n C2' C1' GTP sing 189 n n C2' H2' GTP sing 190 n n O2' HO2' GTP sing 191 n n C1' N9 GTP sing 192 n n C1' H1' GTP sing 193 n n N9 C8 GTP sing 194 n y N9 C4 GTP sing 195 n y C8 N7 GTP doub 196 n y C8 H8 GTP sing 197 n n N7 C5 GTP sing 198 n y C5 C6 GTP sing 199 n n C5 C4 GTP doub 200 n y C6 O6 GTP doub 201 n n C6 N1 GTP sing 202 n n N1 C2 GTP sing 203 n n N1 HN1 GTP sing 204 n n C2 N2 GTP sing 205 n n C2 N3 GTP doub 206 n n N2 HN21 GTP sing 207 n n N2 HN22 GTP sing 208 n n N3 C4 GTP sing 209 n n # _atom_sites.entry_id 8GG7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 401 0 GTP GTP . F 6 G1I R 1 501 0 G1I DRG . G 7 HOH R 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 142.289 104.164 118.06 1 114.46 ? PG GTP 401 A 1 HETATM 2 O O1G GTP . . . E 5 143.483 104.001 118.968 1 117.26 ? O1G GTP 401 A 1 HETATM 3 O O2G GTP . . . E 5 141.139 104.741 118.845 1 112.95 ? O2G GTP 401 A 1 HETATM 4 O O3G GTP . . . E 5 141.898 102.825 117.486 1 116.52 ? O3G GTP 401 A 1 HETATM 5 O O3B GTP . . . E 5 142.688 105.165 116.866 1 113.8 ? O3B GTP 401 A 1 HETATM 6 P PB GTP . . . E 5 143.827 104.766 115.803 1 119.06 ? PB GTP 401 A 1 HETATM 7 O O1B GTP . . . E 5 144.02 105.891 114.817 1 115.52 ? O1B GTP 401 A 1 HETATM 8 O O2B GTP . . . E 5 145.122 104.426 116.499 1 118.06 ? O2B GTP 401 A 1 HETATM 9 O O3A GTP . . . E 5 143.237 103.482 115.036 1 118.54 ? O3A GTP 401 A 1 HETATM 10 P PA GTP . . . E 5 141.925 103.626 114.118 1 119.09 ? PA GTP 401 A 1 HETATM 11 O O1A GTP . . . E 5 141.485 102.265 113.635 1 115.17 ? O1A GTP 401 A 1 HETATM 12 O O2A GTP . . . E 5 140.816 104.313 114.874 1 116.42 ? O2A GTP 401 A 1 HETATM 13 O O5' GTP . . . E 5 142.41 104.519 112.87 1 117.28 ? O5' GTP 401 A 1 HETATM 14 C C5' GTP . . . E 5 143.252 103.984 111.875 1 116.64 ? C5' GTP 401 A 1 HETATM 15 C C4' GTP . . . E 5 142.379 103.427 110.761 1 117.13 ? C4' GTP 401 A 1 HETATM 16 O O4' GTP . . . E 5 141.163 104.14 110.705 1 117.69 ? O4' GTP 401 A 1 HETATM 17 C C3' GTP . . . E 5 142.999 103.579 109.385 1 118.39 ? C3' GTP 401 A 1 HETATM 18 O O3' GTP . . . E 5 143.69 102.409 109.018 1 118.21 ? O3' GTP 401 A 1 HETATM 19 C C2' GTP . . . E 5 141.811 103.795 108.47 1 118.58 ? C2' GTP 401 A 1 HETATM 20 O O2' GTP . . . E 5 141.553 102.624 107.732 1 118.91 ? O2' GTP 401 A 1 HETATM 21 C C1' GTP . . . E 5 140.639 104.096 109.393 1 118.16 ? C1' GTP 401 A 1 HETATM 22 N N9 GTP . . . E 5 140.03 105.392 109.041 1 116.08 ? N9 GTP 401 A 1 HETATM 23 C C8 GTP . . . E 5 139.908 106.484 109.859 1 113.77 ? C8 GTP 401 A 1 HETATM 24 N N7 GTP . . . E 5 139.279 107.464 109.173 1 113.67 ? N7 GTP 401 A 1 HETATM 25 C C5 GTP . . . E 5 138.984 107.01 107.936 1 114.42 ? C5 GTP 401 A 1 HETATM 26 C C6 GTP . . . E 5 138.347 107.595 106.849 1 115.18 ? C6 GTP 401 A 1 HETATM 27 O O6 GTP . . . E 5 137.933 108.75 106.921 1 114.74 ? O6 GTP 401 A 1 HETATM 28 N N1 GTP . . . E 5 138.18 106.875 105.685 1 116.81 ? N1 GTP 401 A 1 HETATM 29 C C2 GTP . . . E 5 138.645 105.579 105.609 1 118.18 ? C2 GTP 401 A 1 HETATM 30 N N2 GTP . . . E 5 138.486 104.88 104.489 1 117.16 ? N2 GTP 401 A 1 HETATM 31 N N3 GTP . . . E 5 139.275 105.004 106.694 1 118.25 ? N3 GTP 401 A 1 HETATM 32 C C4 GTP . . . E 5 139.444 105.706 107.841 1 116.41 ? C4 GTP 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #