data_8GG9
#
_model_server_result.job_id            y7-bbw8rYvHyUL-qEHcw7A 
_model_server_result.datetime_utc      '2024-12-29 01:07:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gg9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8GG9 
#
_exptl.entry_id    8GG9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              209.242 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GG9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GG9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H15 N O3' 
_chem_comp.formula_weight    209.242 
_chem_comp.id                G1I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAO NAN G1I sing 83 n n 
CAH CAG G1I sing 84 n n 
CAH CAI G1I sing 85 n n 
NAN CAI G1I sing 86 n n 
CAG CAE G1I sing 87 n n 
CAI CAJ G1I sing 88 n n 
OAK CAD G1I sing 89 n n 
CAE CAD G1I doub 90 n y 
CAE CAF G1I sing 91 n y 
CAJ CAF G1I sing 92 n n 
CAJ OAM G1I sing 93 n n 
CAD CAC G1I sing 94 n y 
CAF CAA G1I doub 95 n y 
CAC OAL G1I sing 96 n n 
CAC CAB G1I doub 97 n y 
CAA CAB G1I sing 98 n y 
CAA H1 G1I sing 99 n n 
CAB H2 G1I sing 100 n n 
CAG H3 G1I sing 101 n n 
CAG H4 G1I sing 102 n n 
CAH H5 G1I sing 103 n n 
CAH H6 G1I sing 104 n n 
CAI H7 G1I sing 105 n n 
CAJ H8 G1I sing 106 n n 
CAO H9 G1I sing 107 n n 
CAO H10 G1I sing 108 n n 
CAO H11 G1I sing 109 n n 
NAN H12 G1I sing 110 n n 
OAK H14 G1I sing 111 n n 
OAL H15 G1I sing 112 n n 
OAM H16 G1I sing 113 n n 
#
_atom_sites.entry_id                     8GG9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 GTP A 1 401 0 GTP GTP . 
F 6 G1I R 1 501 0 G1I DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA G1I . . . F 6 138.901 169.086 140.452 1 45.2 ? CAA G1I 501 R 1 
HETATM 2 C CAB G1I . . . F 6 139.584 168.866 139.275 1 43.19 ? CAB G1I 501 R 1 
HETATM 3 C CAC G1I . . . F 6 139.994 169.929 138.457 1 48.84 ? CAC G1I 501 R 1 
HETATM 4 C CAD G1I . . . F 6 139.667 171.266 138.908 1 46.46 ? CAD G1I 501 R 1 
HETATM 5 C CAE G1I . . . F 6 138.956 171.472 140.136 1 39.67 ? CAE G1I 501 R 1 
HETATM 6 C CAF G1I . . . F 6 138.567 170.371 140.918 1 44.23 ? CAF G1I 501 R 1 
HETATM 7 C CAG G1I . . . F 6 138.627 172.901 140.577 1 40.12 ? CAG G1I 501 R 1 
HETATM 8 C CAH G1I . . . F 6 138.103 173.108 142.03 1 45.05 ? CAH G1I 501 R 1 
HETATM 9 C CAI G1I . . . F 6 138.293 171.907 142.967 1 42.26 ? CAI G1I 501 R 1 
HETATM 10 C CAJ G1I . . . F 6 137.809 170.612 142.238 1 45.1 ? CAJ G1I 501 R 1 
HETATM 11 C CAO G1I . . . F 6 137.638 173.474 144.805 1 48.56 ? CAO G1I 501 R 1 
HETATM 12 N NAN G1I . . . F 6 137.613 172.102 144.268 1 44.61 ? NAN G1I 501 R 1 
HETATM 13 O OAK G1I . . . F 6 140.026 172.304 138.176 1 51 ? OAK G1I 501 R 1 
HETATM 14 O OAL G1I . . . F 6 140.656 169.78 137.308 1 49.19 ? OAL G1I 501 R 1 
HETATM 15 O OAM G1I . . . F 6 138.029 169.55 143.111 1 46.46 ? OAM G1I 501 R 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#