data_8GHH # _model_server_result.job_id g2dBmL6EJEfh-iu2P2YVCw _model_server_result.datetime_utc '2024-10-12 16:35:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ghh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8GHH # _exptl.entry_id 8GHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GHH _cell.length_a 107.956 _cell.length_b 107.956 _cell.length_c 138.381 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 122 n n C1 C2 GOL sing 123 n n C1 H11 GOL sing 124 n n C1 H12 GOL sing 125 n n O1 HO1 GOL sing 126 n n C2 O2 GOL sing 127 n n C2 C3 GOL sing 128 n n C2 H2 GOL sing 129 n n O2 HO2 GOL sing 130 n n C3 O3 GOL sing 131 n n C3 H31 GOL sing 132 n n C3 H32 GOL sing 133 n n O3 HO3 GOL sing 134 n n # _atom_sites.entry_id 8GHH _atom_sites.fract_transf_matrix[1][1] 0.009263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2HP A 1 401 401 2HP 2HP . C 2 2HP A 1 402 402 2HP 2HP . D 3 GOL A 1 403 601 GOL GOL . E 3 GOL A 1 404 602 GOL GOL . F 3 GOL A 1 405 603 GOL GOL . G 3 GOL A 1 406 604 GOL GOL . H 3 GOL A 1 407 605 GOL GOL . I 3 GOL A 1 408 606 GOL GOL . J 3 GOL A 1 409 607 GOL GOL . K 4 CL A 1 410 1 CL CL . L 5 HOH A 1 501 115 HOH HOH . L 5 HOH A 2 502 59 HOH HOH . L 5 HOH A 3 503 14 HOH HOH . L 5 HOH A 4 504 78 HOH HOH . L 5 HOH A 5 505 86 HOH HOH . L 5 HOH A 6 506 56 HOH HOH . L 5 HOH A 7 507 28 HOH HOH . L 5 HOH A 8 508 13 HOH HOH . L 5 HOH A 9 509 84 HOH HOH . L 5 HOH A 10 510 2 HOH HOH . L 5 HOH A 11 511 81 HOH HOH . L 5 HOH A 12 512 11 HOH HOH . L 5 HOH A 13 513 29 HOH HOH . L 5 HOH A 14 514 3 HOH HOH . L 5 HOH A 15 515 63 HOH HOH . L 5 HOH A 16 516 95 HOH HOH . L 5 HOH A 17 517 30 HOH HOH . L 5 HOH A 18 518 21 HOH HOH . L 5 HOH A 19 519 52 HOH HOH . L 5 HOH A 20 520 23 HOH HOH . L 5 HOH A 21 521 39 HOH HOH . L 5 HOH A 22 522 46 HOH HOH . L 5 HOH A 23 523 73 HOH HOH . L 5 HOH A 24 524 31 HOH HOH . L 5 HOH A 25 525 97 HOH HOH . L 5 HOH A 26 526 55 HOH HOH . L 5 HOH A 27 527 72 HOH HOH . L 5 HOH A 28 528 80 HOH HOH . L 5 HOH A 29 529 10 HOH HOH . L 5 HOH A 30 530 51 HOH HOH . L 5 HOH A 31 531 88 HOH HOH . L 5 HOH A 32 532 53 HOH HOH . L 5 HOH A 33 533 16 HOH HOH . L 5 HOH A 34 534 32 HOH HOH . L 5 HOH A 35 535 8 HOH HOH . L 5 HOH A 36 536 114 HOH HOH . L 5 HOH A 37 537 57 HOH HOH . L 5 HOH A 38 538 42 HOH HOH . L 5 HOH A 39 539 66 HOH HOH . L 5 HOH A 40 540 4 HOH HOH . L 5 HOH A 41 541 112 HOH HOH . L 5 HOH A 42 542 74 HOH HOH . L 5 HOH A 43 543 62 HOH HOH . L 5 HOH A 44 544 18 HOH HOH . L 5 HOH A 45 545 12 HOH HOH . L 5 HOH A 46 546 9 HOH HOH . L 5 HOH A 47 547 17 HOH HOH . L 5 HOH A 48 548 24 HOH HOH . L 5 HOH A 49 549 15 HOH HOH . L 5 HOH A 50 550 107 HOH HOH . L 5 HOH A 51 551 90 HOH HOH . L 5 HOH A 52 552 118 HOH HOH . L 5 HOH A 53 553 92 HOH HOH . L 5 HOH A 54 554 87 HOH HOH . L 5 HOH A 55 555 50 HOH HOH . L 5 HOH A 56 556 71 HOH HOH . L 5 HOH A 57 557 104 HOH HOH . L 5 HOH A 58 558 100 HOH HOH . L 5 HOH A 59 559 26 HOH HOH . L 5 HOH A 60 560 40 HOH HOH . L 5 HOH A 61 561 98 HOH HOH . L 5 HOH A 62 562 77 HOH HOH . L 5 HOH A 63 563 91 HOH HOH . L 5 HOH A 64 564 89 HOH HOH . L 5 HOH A 65 565 85 HOH HOH . L 5 HOH A 66 566 43 HOH HOH . L 5 HOH A 67 567 48 HOH HOH . L 5 HOH A 68 568 108 HOH HOH . L 5 HOH A 69 569 36 HOH HOH . L 5 HOH A 70 570 61 HOH HOH . L 5 HOH A 71 571 103 HOH HOH . L 5 HOH A 72 572 106 HOH HOH . L 5 HOH A 73 573 93 HOH HOH . L 5 HOH A 74 574 25 HOH HOH . L 5 HOH A 75 575 5 HOH HOH . L 5 HOH A 76 576 111 HOH HOH . L 5 HOH A 77 577 102 HOH HOH . L 5 HOH A 78 578 27 HOH HOH . L 5 HOH A 79 579 67 HOH HOH . L 5 HOH A 80 580 60 HOH HOH . L 5 HOH A 81 581 101 HOH HOH . L 5 HOH A 82 582 110 HOH HOH . L 5 HOH A 83 583 105 HOH HOH . L 5 HOH A 84 584 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 -50.28 -23.315 -9.53 1 78.78 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 3 -48.965 -22.891 -9.317 1 82.16 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 3 -50.315 -24.066 -10.891 1 73.53 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 3 -51.55 -23.945 -11.522 1 67.37 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 3 -49.159 -23.454 -11.727 1 73.11 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 3 -49.198 -24.066 -12.982 1 71.39 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #