data_8GHT # _model_server_result.job_id UVP5waVAm2N9oln3DPLmyw _model_server_result.datetime_utc '2025-03-13 21:49:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ght # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8GHT # _exptl.entry_id 8GHT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GHT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 102 A MET 99 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A OD1 ASP 147 A ASP 144 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A OD2 ASP 147 A ASP 144 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 A NE2 HIS 152 A HIS 149 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 A NE2 HIS 154 A HIS 151 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A NE2 HIS 180 A HIS 177 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 A OD1 ASN 181 A ASN 178 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 A ND2 ASN 181 A ASN 178 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc9 A OE1 GLU 184 A GLU 181 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 A OE2 GLU 184 A GLU 181 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 A OE1 GLN 210 A GLN 207 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc12 A NE2 GLN 210 A GLN 207 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc13 A OD1 ASP 211 A ASP 208 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 A OD2 ASP 211 A ASP 208 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc15 A OE1 GLU 214 A GLU 211 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc16 A OE2 GLU 214 A GLU 211 1_555 C CD CD . A CD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc17 A OE2 GLU 243 A GLU 240 1_555 E CD CD . A CD 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc18 A OE1 GLU 279 A GLU 276 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc19 A OE2 GLU 279 A GLU 276 1_555 D CD CD . A CD 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc20 B SD MET 102 B MET 99 1_555 H CD CD . B CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc21 B OD1 ASP 147 B ASP 144 1_555 I CD CD . B CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc22 B OD2 ASP 147 B ASP 144 1_555 I CD CD . B CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc23 B NE2 HIS 152 B HIS 149 1_555 I CD CD . B CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc24 B NE2 HIS 154 B HIS 151 1_555 I CD CD . B CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc25 B NE2 HIS 180 B HIS 177 1_555 H CD CD . B CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc26 B OD1 ASN 181 B ASN 178 1_555 J CD CD . B CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc27 B ND2 ASN 181 B ASN 178 1_555 J CD CD . B CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc28 B OE1 GLU 184 B GLU 181 1_555 H CD CD . B CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc29 B OE2 GLU 184 B GLU 181 1_555 J CD CD . B CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc30 B OE1 GLN 210 B GLN 207 1_555 H CD CD . B CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc31 B NE2 GLN 210 B GLN 207 1_555 H CD CD . B CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc32 B OD1 ASP 211 B ASP 208 1_555 J CD CD . B CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc33 B OD2 ASP 211 B ASP 208 1_555 J CD CD . B CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc34 B OE1 GLU 214 B GLU 211 1_555 H CD CD . B CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc35 B OE2 GLU 214 B GLU 211 1_555 H CD CD . B CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc36 B OE2 GLU 243 B GLU 240 1_555 J CD CD . B CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc37 B OE1 GLU 279 B GLU 276 1_555 I CD CD . B CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc38 B OE2 GLU 279 B GLU 276 1_555 I CD CD . B CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GHT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD A 1 401 401 CD CD . D 2 CD A 1 402 402 CD CD . E 2 CD A 1 403 403 CD CD . F 3 PTY A 1 404 501 PTY PTY . G 3 PTY B 1 501 501 PTY PTY . H 2 CD B 1 502 401 CD CD . I 2 CD B 1 503 402 CD CD . J 2 CD B 1 504 403 CD CD . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 83.993 _atom_site.Cartn_y 66.898 _atom_site.Cartn_z 82.126 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #