data_8GHV
#
_model_server_result.job_id            z6LQtNv-Nqh0P0DphlqVEA 
_model_server_result.datetime_utc      '2025-03-13 19:11:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ghv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8GHV 
#
_exptl.entry_id    8GHV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              375.588 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (5Z,8Z,11Z,13S,14Z)-N-[(2R)-1-hydroxypropan-2-yl]-13-methylicosa-5,8,11,14-tetraenamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GHV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GHV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             272 
_struct_conn.ptnr1_auth_asym_id             D 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              257 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             279 
_struct_conn.ptnr2_auth_asym_id             D 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              264 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.033 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C24 H41 N O2' 
_chem_comp.formula_weight    375.588 
_chem_comp.id                ZI5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (5Z,8Z,11Z,13S,14Z)-N-[(2R)-1-hydroxypropan-2-yl]-13-methylicosa-5,8,11,14-tetraenamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C15 ZI5 sing 374 n n 
C16 C18 ZI5 sing 375 n n 
C13 C11 ZI5 sing 376 n n 
C13 C15 ZI5 sing 377 n n 
C11 C8 ZI5 doub 378 z n 
C19 C18 ZI5 sing 379 n n 
C8 C7 ZI5 sing 380 n n 
C7 C24 ZI5 sing 381 n n 
C7 C5 ZI5 sing 382 n n 
C1 C2 ZI5 sing 383 n n 
C1 C3 ZI5 sing 384 n n 
C6 C4 ZI5 sing 385 n n 
C6 C9 ZI5 sing 386 n n 
C2 C4 ZI5 doub 387 z n 
C5 C3 ZI5 doub 388 z n 
C9 C10 ZI5 doub 389 z n 
C10 C12 ZI5 sing 390 n n 
C12 C14 ZI5 sing 391 n n 
C14 C17 ZI5 sing 392 n n 
C17 C20 ZI5 sing 393 n n 
O1 C20 ZI5 doub 394 n n 
C20 N1 ZI5 sing 395 n n 
N1 C21 ZI5 sing 396 n n 
C21 C22 ZI5 sing 397 n n 
C21 C23 ZI5 sing 398 n n 
O2 C22 ZI5 sing 399 n n 
N1 HN1 ZI5 sing 400 n n 
C4 HC4 ZI5 sing 401 n n 
C5 HC5 ZI5 sing 402 n n 
C6 H6_2 ZI5 sing 403 n n 
C6 H6_1 ZI5 sing 404 n n 
C7 HC7 ZI5 sing 405 n n 
C8 HC8 ZI5 sing 406 n n 
C10 HC10 ZI5 sing 407 n n 
C13 H131 ZI5 sing 408 n n 
C13 H132 ZI5 sing 409 n n 
C15 H152 ZI5 sing 410 n n 
C15 H151 ZI5 sing 411 n n 
C17 H172 ZI5 sing 412 n n 
C17 H171 ZI5 sing 413 n n 
C21 HC21 ZI5 sing 414 n n 
C22 H221 ZI5 sing 415 n n 
C22 H222 ZI5 sing 416 n n 
C24 H241 ZI5 sing 417 n n 
C24 H243 ZI5 sing 418 n n 
C24 H242 ZI5 sing 419 n n 
C1 H1_1 ZI5 sing 420 n n 
C1 H1_2 ZI5 sing 421 n n 
C2 HC2 ZI5 sing 422 n n 
O2 HO2 ZI5 sing 423 n n 
C3 HC3 ZI5 sing 424 n n 
C9 HC9 ZI5 sing 425 n n 
C11 HC11 ZI5 sing 426 n n 
C12 H122 ZI5 sing 427 n n 
C12 H121 ZI5 sing 428 n n 
C14 H142 ZI5 sing 429 n n 
C14 H141 ZI5 sing 430 n n 
C16 H161 ZI5 sing 431 n n 
C16 H162 ZI5 sing 432 n n 
C18 H181 ZI5 sing 433 n n 
C18 H182 ZI5 sing 434 n n 
C19 H192 ZI5 sing 435 n n 
C19 H193 ZI5 sing 436 n n 
C19 H191 ZI5 sing 437 n n 
C23 H232 ZI5 sing 438 n n 
C23 H233 ZI5 sing 439 n n 
C23 H231 ZI5 sing 440 n n 
#
_atom_sites.entry_id                     8GHV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           ZI5 
_pdbx_nonpoly_scheme.pdb_strand_id    D 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      501 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       ZI5 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ZI5 . . . F 6 145.609 143.38 197.828 1 77.27 ? N1 ZI5 501 D 1 
HETATM 2 C C4 ZI5 . . . F 6 143.273 145.299 190.93 1 78.56 ? C4 ZI5 501 D 1 
HETATM 3 C C5 ZI5 . . . F 6 147.964 145.782 190.884 1 79.83 ? C5 ZI5 501 D 1 
HETATM 4 C C6 ZI5 . . . F 6 142.765 143.872 190.753 1 75.12 ? C6 ZI5 501 D 1 
HETATM 5 C C7 ZI5 . . . F 6 148.109 146.329 189.471 1 77.04 ? C7 ZI5 501 D 1 
HETATM 6 C C8 ZI5 . . . F 6 149.489 145.941 188.961 1 75.48 ? C8 ZI5 501 D 1 
HETATM 7 C C10 ZI5 . . . F 6 141.852 143.48 193.063 1 78.96 ? C10 ZI5 501 D 1 
HETATM 8 C C13 ZI5 . . . F 6 148.693 143.854 187.75 1 76.83 ? C13 ZI5 501 D 1 
HETATM 9 C C15 ZI5 . . . F 6 148.975 142.484 188.357 1 78.03 ? C15 ZI5 501 D 1 
HETATM 10 C C17 ZI5 . . . F 6 144.442 142.623 195.698 1 78.41 ? C17 ZI5 501 D 1 
HETATM 11 C C20 ZI5 . . . F 6 144.876 143.742 196.638 1 78.14 ? C20 ZI5 501 D 1 
HETATM 12 C C21 ZI5 . . . F 6 146.031 144.37 198.78 1 76.37 ? C21 ZI5 501 D 1 
HETATM 13 C C22 ZI5 . . . F 6 144.794 144.821 199.531 1 79.71 ? C22 ZI5 501 D 1 
HETATM 14 C C24 ZI5 . . . F 6 148.04 147.847 189.553 1 77.11 ? C24 ZI5 501 D 1 
HETATM 15 C C1 ZI5 . . . F 6 145.699 144.683 190.49 1 78.2 ? C1 ZI5 501 D 1 
HETATM 16 O O1 ZI5 . . . F 6 144.65 144.869 196.401 1 80.64 ? O1 ZI5 501 D 1 
HETATM 17 C C2 ZI5 . . . F 6 144.571 145.653 190.83 1 79.03 ? C2 ZI5 501 D 1 
HETATM 18 O O2 ZI5 . . . F 6 144.241 145.904 198.86 1 80.65 ? O2 ZI5 501 D 1 
HETATM 19 C C3 ZI5 . . . F 6 146.911 145.065 191.33 1 79.3 ? C3 ZI5 501 D 1 
HETATM 20 C C9 ZI5 . . . F 6 141.631 143.693 191.753 1 77.43 ? C9 ZI5 501 D 1 
HETATM 21 C C11 ZI5 . . . F 6 149.746 144.855 188.21 1 76.69 ? C11 ZI5 501 D 1 
HETATM 22 C C12 ZI5 . . . F 6 143.247 143.376 193.663 1 77.86 ? C12 ZI5 501 D 1 
HETATM 23 C C14 ZI5 . . . F 6 143.076 142.879 195.087 1 78.9 ? C14 ZI5 501 D 1 
HETATM 24 C C16 ZI5 . . . F 6 150.201 141.85 187.72 1 78.36 ? C16 ZI5 501 D 1 
HETATM 25 C C18 ZI5 . . . F 6 150.674 140.669 188.555 1 77.42 ? C18 ZI5 501 D 1 
HETATM 26 C C19 ZI5 . . . F 6 149.811 139.45 188.28 1 77.42 ? C19 ZI5 501 D 1 
HETATM 27 C C23 ZI5 . . . F 6 146.951 143.707 199.789 1 77.3 ? C23 ZI5 501 D 1 
HETATM 28 H HN1 ZI5 . . . F 6 145.756 142.541 197.992 1 78.53 ? HN1 ZI5 501 D 1 
HETATM 29 H HC4 ZI5 . . . F 6 142.64 145.972 191.148 1 79.5 ? HC4 ZI5 501 D 1 
HETATM 30 H HC5 ZI5 . . . F 6 148.667 145.963 191.499 1 79.7 ? HC5 ZI5 501 D 1 
HETATM 31 H H6_2 ZI5 . . . F 6 143.443 143.247 190.924 1 76.82 ? H6_2 ZI5 501 D 1 
HETATM 32 H H6_1 ZI5 . . . F 6 142.437 143.76 189.881 1 76.85 ? H6_1 ZI5 501 D 1 
HETATM 33 H HC7 ZI5 . . . F 6 147.437 146.007 188.903 1 77.04 ? HC7 ZI5 501 D 1 
HETATM 34 H HC8 ZI5 . . . F 6 150.22 146.502 189.194 1 78.21 ? HC8 ZI5 501 D 1 
HETATM 35 H HC10 ZI5 . . . F 6 141.105 143.378 193.643 1 80.35 ? HC10 ZI5 501 D 1 
HETATM 36 H H131 ZI5 . . . F 6 148.724 143.783 186.814 1 79.12 ? H131 ZI5 501 D 1 
HETATM 37 H H132 ZI5 . . . F 6 147.836 144.133 188.008 1 77.29 ? H132 ZI5 501 D 1 
HETATM 38 H H152 ZI5 . . . F 6 149.121 142.581 189.28 1 78.65 ? H152 ZI5 501 D 1 
HETATM 39 H H151 ZI5 . . . F 6 148.232 141.926 188.219 1 78.93 ? H151 ZI5 501 D 1 
HETATM 40 H H172 ZI5 . . . F 6 145.077 142.527 195.014 1 79.08 ? H172 ZI5 501 D 1 
HETATM 41 H H171 ZI5 . . . F 6 144.392 141.827 196.189 1 80.61 ? H171 ZI5 501 D 1 
HETATM 42 H HC21 ZI5 . . . F 6 146.455 145.094 198.358 1 77.73 ? HC21 ZI5 501 D 1 
HETATM 43 H H221 ZI5 . . . F 6 145.025 145.074 200.406 1 80.46 ? H221 ZI5 501 D 1 
HETATM 44 H H222 ZI5 . . . F 6 144.171 144.12 199.559 1 80.18 ? H222 ZI5 501 D 1 
HETATM 45 H H241 ZI5 . . . F 6 148.165 148.116 190.445 1 79.17 ? H241 ZI5 501 D 1 
HETATM 46 H H243 ZI5 . . . F 6 147.2 148.14 189.254 1 79.14 ? H243 ZI5 501 D 1 
HETATM 47 H H242 ZI5 . . . F 6 148.714 148.221 189.016 1 78.97 ? H242 ZI5 501 D 1 
HETATM 48 H H1_1 ZI5 . . . F 6 145.901 144.736 189.576 1 77.84 ? H1_1 ZI5 501 D 1 
HETATM 49 H H1_2 ZI5 . . . F 6 145.448 143.806 190.704 1 77.55 ? H1_2 ZI5 501 D 1 
HETATM 50 H HC2 ZI5 . . . F 6 144.798 146.563 190.963 1 78.99 ? HC2 ZI5 501 D 1 
HETATM 51 H HO2 ZI5 . . . F 6 144.653 146.598 199.058 1 80.95 ? HO2 ZI5 501 D 1 
HETATM 52 H HC3 ZI5 . . . F 6 146.927 144.776 192.236 1 78.47 ? HC3 ZI5 501 D 1 
HETATM 53 H HC9 ZI5 . . . F 6 140.734 143.75 191.444 1 78.94 ? HC9 ZI5 501 D 1 
HETATM 54 H HC11 ZI5 . . . F 6 150.647 144.705 187.944 1 79.23 ? HC11 ZI5 501 D 1 
HETATM 55 H H122 ZI5 . . . F 6 143.661 144.219 193.668 1 77.92 ? H122 ZI5 501 D 1 
HETATM 56 H H121 ZI5 . . . F 6 143.767 142.767 193.173 1 77.13 ? H121 ZI5 501 D 1 
HETATM 57 H H142 ZI5 . . . F 6 142.581 142.082 195.077 1 80.1 ? H142 ZI5 501 D 1 
HETATM 58 H H141 ZI5 . . . F 6 142.615 143.522 195.592 1 79.64 ? H141 ZI5 501 D 1 
HETATM 59 H H161 ZI5 . . . F 6 150.895 142.48 187.666 1 79.75 ? H161 ZI5 501 D 1 
HETATM 60 H H162 ZI5 . . . F 6 149.989 141.554 186.857 1 79.07 ? H162 ZI5 501 D 1 
HETATM 61 H H181 ZI5 . . . F 6 150.614 140.891 189.465 1 78.45 ? H181 ZI5 501 D 1 
HETATM 62 H H182 ZI5 . . . F 6 151.566 140.473 188.338 1 80.43 ? H182 ZI5 501 D 1 
HETATM 63 H H192 ZI5 . . . F 6 149.009 139.517 188.765 1 79.58 ? H192 ZI5 501 D 1 
HETATM 64 H H193 ZI5 . . . F 6 150.272 138.674 188.539 1 79.34 ? H193 ZI5 501 D 1 
HETATM 65 H H191 ZI5 . . . F 6 149.617 139.407 187.362 1 79.19 ? H191 ZI5 501 D 1 
HETATM 66 H H232 ZI5 . . . F 6 146.537 143.692 200.632 1 79.76 ? H232 ZI5 501 D 1 
HETATM 67 H H233 ZI5 . . . F 6 147.754 144.19 199.844 1 79.31 ? H233 ZI5 501 D 1 
HETATM 68 H H231 ZI5 . . . F 6 147.129 142.825 199.52 1 79.53 ? H231 ZI5 501 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           68 
#