data_8GI8 # _model_server_result.job_id p6_iUBzOapTq4PS3UHzmnQ _model_server_result.datetime_utc '2024-11-21 14:05:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 8GI8 # _exptl.entry_id 8GI8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GI8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 'complete point assembly' 1 ? monomeric 1 'point asymmetric unit' 2 ? monomeric 1 'point asymmetric unit, std point frame' 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 (1-3) A,B,C,D,E,F,G,H,I,J,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L 3 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.915211 -0.402975 0 0.402975 0.915211 0 0 0 1 -67.5332 -173.78964 -122.46279 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 311.93679 83.58322 0 3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 83.58321 311.93679 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 233 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.442 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8GI8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 NA A 1 302 1 NA NA . D 4 CLR A 1 303 307 CLR CLR . E 4 CLR A 1 304 308 CLR CLR . F 4 CLR A 1 305 309 CLR CLR . G 5 PEE A 1 306 310 PEE PEE . H 5 PEE A 1 307 311 PEE PEE . I 5 PEE A 1 308 312 PEE PEE . J 5 PEE A 1 309 313 PEE PEE . K 5 PEE A 1 310 314 PEE PEE . L 6 HOH A 1 401 4 HOH HOH . L 6 HOH A 2 402 9 HOH HOH . L 6 HOH A 3 403 14 HOH HOH . L 6 HOH A 4 404 2 HOH HOH . L 6 HOH A 5 405 1 HOH HOH . L 6 HOH A 6 406 5 HOH HOH . L 6 HOH A 7 407 10 HOH HOH . L 6 HOH A 8 408 6 HOH HOH . L 6 HOH A 9 409 8 HOH HOH . L 6 HOH A 10 410 13 HOH HOH . L 6 HOH A 11 411 15 HOH HOH . L 6 HOH A 12 412 11 HOH HOH . L 6 HOH A 13 413 12 HOH HOH . L 6 HOH A 14 414 3 HOH HOH . L 6 HOH A 15 415 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 4 154.025 107.893 110.403 1 88.39 ? C1 CLR 304 A 1 HETATM 2 C C2 CLR . . . E 4 153.827 107.789 108.91 1 87.7 ? C2 CLR 304 A 1 HETATM 3 C C3 CLR . . . E 4 152.642 108.582 108.435 1 91.92 ? C3 CLR 304 A 1 HETATM 4 C C4 CLR . . . E 4 152.801 110.047 108.879 1 90.17 ? C4 CLR 304 A 1 HETATM 5 C C5 CLR . . . E 4 153.079 110.211 110.356 1 89.98 ? C5 CLR 304 A 1 HETATM 6 C C6 CLR . . . E 4 152.362 111.093 111.027 1 87.03 ? C6 CLR 304 A 1 HETATM 7 C C7 CLR . . . E 4 152.538 111.358 112.532 1 87.32 ? C7 CLR 304 A 1 HETATM 8 C C8 CLR . . . E 4 153.846 110.759 113.065 1 88.66 ? C8 CLR 304 A 1 HETATM 9 C C9 CLR . . . E 4 154.051 109.331 112.484 1 93.68 ? C9 CLR 304 A 1 HETATM 10 C C10 CLR . . . E 4 154.186 109.317 110.94 1 93.07 ? C10 CLR 304 A 1 HETATM 11 C C11 CLR . . . E 4 155.173 108.576 113.212 1 90.55 ? C11 CLR 304 A 1 HETATM 12 C C12 CLR . . . E 4 155.006 108.569 114.74 1 91.13 ? C12 CLR 304 A 1 HETATM 13 C C13 CLR . . . E 4 154.974 110.015 115.266 1 93.1 ? C13 CLR 304 A 1 HETATM 14 C C14 CLR . . . E 4 153.72 110.655 114.552 1 86.5 ? C14 CLR 304 A 1 HETATM 15 C C15 CLR . . . E 4 153.493 111.98 115.331 1 85.39 ? C15 CLR 304 A 1 HETATM 16 C C16 CLR . . . E 4 153.837 111.577 116.813 1 84.26 ? C16 CLR 304 A 1 HETATM 17 C C17 CLR . . . E 4 154.506 110.149 116.77 1 89.65 ? C17 CLR 304 A 1 HETATM 18 C C18 CLR . . . E 4 156.238 110.783 115.016 1 85.54 ? C18 CLR 304 A 1 HETATM 19 C C19 CLR . . . E 4 155.552 109.892 110.527 1 82.3 ? C19 CLR 304 A 1 HETATM 20 C C20 CLR . . . E 4 155.593 110.103 117.845 1 88.25 ? C20 CLR 304 A 1 HETATM 21 C C21 CLR . . . E 4 156.432 108.82 117.859 1 88.74 ? C21 CLR 304 A 1 HETATM 22 C C22 CLR . . . E 4 154.779 110.145 119.199 1 85.16 ? C22 CLR 304 A 1 HETATM 23 C C23 CLR . . . E 4 155.674 110.081 120.447 1 88 ? C23 CLR 304 A 1 HETATM 24 C C24 CLR . . . E 4 156.435 111.447 120.452 1 90.03 ? C24 CLR 304 A 1 HETATM 25 C C25 CLR . . . E 4 157.273 111.536 121.739 1 89.15 ? C25 CLR 304 A 1 HETATM 26 C C26 CLR . . . E 4 157.72 112.996 121.879 1 81.7 ? C26 CLR 304 A 1 HETATM 27 C C27 CLR . . . E 4 158.422 110.529 121.776 1 85.06 ? C27 CLR 304 A 1 HETATM 28 O O1 CLR . . . E 4 152.422 108.515 107.042 1 90.91 ? O1 CLR 304 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #