data_8GI8
#
_model_server_result.job_id            1TTOLA6-hi_mTXr4mCSHEw 
_model_server_result.datetime_utc      '2024-11-21 13:49:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gi8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":308}' 
#
_entry.id    8GI8 
#
_exptl.entry_id    8GI8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GI8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GI8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 'complete point assembly' 1 
? monomeric 1 'point asymmetric unit' 2 
? monomeric 1 'point asymmetric unit, std point frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 (1-3) 
A,B,C,D,E,F,G,H,I,J,K,L 2 1 
A,B,C,D,E,F,G,H,I,J,K,L 3 P 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
P 'transform to point frame' ? ? 0.915211 -0.402975 0 0.402975 0.915211 0 0 0 1 -67.5332 -173.78964 -122.46279 
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 311.93679 83.58322 0 
3 'point symmetry operation' ? ? -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 83.58321 311.93679 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             233 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              233 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.442 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 314 n n 
C5 C4 PEE sing 315 n n 
C4 O4P PEE sing 316 n n 
O4P P PEE sing 317 n n 
O1P P PEE doub 318 n n 
C1 O3P PEE sing 319 n n 
C1 C2 PEE sing 320 n n 
O3P P PEE sing 321 n n 
P O2P PEE sing 322 n n 
C2 C3 PEE sing 323 n n 
C2 O2 PEE sing 324 n n 
C3 O3 PEE sing 325 n n 
O2 C10 PEE sing 326 n n 
C31 C30 PEE sing 327 n n 
C31 C32 PEE sing 328 n n 
C33 C32 PEE sing 329 n n 
C33 C34 PEE sing 330 n n 
C30 O3 PEE sing 331 n n 
C30 O5 PEE doub 332 n n 
C10 O4 PEE doub 333 n n 
C10 C11 PEE sing 334 n n 
C34 C35 PEE sing 335 n n 
C11 C12 PEE sing 336 n n 
C35 C36 PEE sing 337 n n 
C36 C37 PEE sing 338 n n 
C37 C38 PEE sing 339 n n 
C38 C39 PEE doub 340 z n 
C12 C13 PEE sing 341 n n 
C39 C40 PEE sing 342 n n 
C13 C14 PEE sing 343 n n 
C14 C15 PEE sing 344 n n 
C40 C41 PEE sing 345 n n 
C15 C16 PEE sing 346 n n 
C41 C42 PEE sing 347 n n 
C16 C17 PEE sing 348 n n 
C42 C43 PEE sing 349 n n 
C17 C18 PEE sing 350 n n 
C43 C44 PEE sing 351 n n 
C18 C19 PEE doub 352 z n 
C46 C47 PEE sing 353 n n 
C46 C45 PEE sing 354 n n 
C44 C45 PEE sing 355 n n 
C19 C20 PEE sing 356 n n 
C20 C21 PEE sing 357 n n 
C21 C22 PEE sing 358 n n 
C22 C23 PEE sing 359 n n 
C23 C24 PEE sing 360 n n 
C24 C25 PEE sing 361 n n 
C26 C25 PEE sing 362 n n 
C26 C27 PEE sing 363 n n 
C27 H7 PEE sing 364 n n 
C27 H8 PEE sing 365 n n 
C27 H82 PEE sing 366 n n 
C26 H5 PEE sing 367 n n 
C26 H6 PEE sing 368 n n 
C25 H12 PEE sing 369 n n 
C25 H4 PEE sing 370 n n 
C24 H10 PEE sing 371 n n 
C24 H11 PEE sing 372 n n 
C23 H83 PEE sing 373 n n 
C23 H9 PEE sing 374 n n 
C22 H2 PEE sing 375 n n 
C22 H3 PEE sing 376 n n 
C21 H14 PEE sing 377 n n 
C21 H1 PEE sing 378 n n 
C20 H16 PEE sing 379 n n 
C20 H13 PEE sing 380 n n 
C19 H18 PEE sing 381 n n 
C18 H20 PEE sing 382 n n 
C17 H22 PEE sing 383 n n 
C17 H19 PEE sing 384 n n 
C16 H21 PEE sing 385 n n 
C16 H28 PEE sing 386 n n 
C15 H23 PEE sing 387 n n 
C15 H24 PEE sing 388 n n 
C14 H25 PEE sing 389 n n 
C14 H26 PEE sing 390 n n 
C13 H17 PEE sing 391 n n 
C13 H27 PEE sing 392 n n 
C12 H15 PEE sing 393 n n 
C12 H29 PEE sing 394 n n 
C11 H30 PEE sing 395 n n 
C11 H31 PEE sing 396 n n 
C2 H32 PEE sing 397 n n 
C1 H33 PEE sing 398 n n 
C1 H34 PEE sing 399 n n 
O2P H35 PEE sing 400 n n 
C4 H36 PEE sing 401 n n 
C4 H37 PEE sing 402 n n 
C5 H38 PEE sing 403 n n 
C5 H39 PEE sing 404 n n 
N H40 PEE sing 405 n n 
N H41 PEE sing 406 n n 
C3 H43 PEE sing 407 n n 
C3 H44 PEE sing 408 n n 
C31 H45 PEE sing 409 n n 
C31 H46 PEE sing 410 n n 
C32 H47 PEE sing 411 n n 
C32 H48 PEE sing 412 n n 
C33 H49 PEE sing 413 n n 
C33 H50 PEE sing 414 n n 
C34 H51 PEE sing 415 n n 
C34 H52 PEE sing 416 n n 
C35 H53 PEE sing 417 n n 
C35 H54 PEE sing 418 n n 
C36 H55 PEE sing 419 n n 
C36 H56 PEE sing 420 n n 
C37 H57 PEE sing 421 n n 
C37 H58 PEE sing 422 n n 
C38 H59 PEE sing 423 n n 
C39 H60 PEE sing 424 n n 
C40 H81 PEE sing 425 n n 
C40 H61 PEE sing 426 n n 
C41 H80 PEE sing 427 n n 
C41 H62 PEE sing 428 n n 
C42 H63 PEE sing 429 n n 
C42 H64 PEE sing 430 n n 
C43 H65 PEE sing 431 n n 
C43 H66 PEE sing 432 n n 
C44 H67 PEE sing 433 n n 
C44 H68 PEE sing 434 n n 
C45 H69 PEE sing 435 n n 
C45 H70 PEE sing 436 n n 
C46 H71 PEE sing 437 n n 
C46 H72 PEE sing 438 n n 
C47 H73 PEE sing 439 n n 
C47 H74 PEE sing 440 n n 
C47 H75 PEE sing 441 n n 
#
_atom_sites.entry_id                     8GI8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 NA A 1 302 1 NA NA . 
D 4 CLR A 1 303 307 CLR CLR . 
E 4 CLR A 1 304 308 CLR CLR . 
F 4 CLR A 1 305 309 CLR CLR . 
G 5 PEE A 1 306 310 PEE PEE . 
H 5 PEE A 1 307 311 PEE PEE . 
I 5 PEE A 1 308 312 PEE PEE . 
J 5 PEE A 1 309 313 PEE PEE . 
K 5 PEE A 1 310 314 PEE PEE . 
L 6 HOH A 1 401 4 HOH HOH . 
L 6 HOH A 2 402 9 HOH HOH . 
L 6 HOH A 3 403 14 HOH HOH . 
L 6 HOH A 4 404 2 HOH HOH . 
L 6 HOH A 5 405 1 HOH HOH . 
L 6 HOH A 6 406 5 HOH HOH . 
L 6 HOH A 7 407 10 HOH HOH . 
L 6 HOH A 8 408 6 HOH HOH . 
L 6 HOH A 9 409 8 HOH HOH . 
L 6 HOH A 10 410 13 HOH HOH . 
L 6 HOH A 11 411 15 HOH HOH . 
L 6 HOH A 12 412 11 HOH HOH . 
L 6 HOH A 13 413 12 HOH HOH . 
L 6 HOH A 14 414 3 HOH HOH . 
L 6 HOH A 15 415 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . I 5 133.767 102.886 130.69 1 87.75 ? C27 PEE 308 A 1 
HETATM 2 C C26 PEE . . . I 5 135.282 102.968 130.609 1 89.2 ? C26 PEE 308 A 1 
HETATM 3 C C25 PEE . . . I 5 135.813 104.13 131.445 1 91.06 ? C25 PEE 308 A 1 
HETATM 4 C C24 PEE . . . I 5 136.351 103.65 132.795 1 90.02 ? C24 PEE 308 A 1 
HETATM 5 C C23 PEE . . . I 5 135.242 103.428 133.837 1 89.36 ? C23 PEE 308 A 1 
HETATM 6 C C22 PEE . . . I 5 135.126 104.637 134.753 1 90.15 ? C22 PEE 308 A 1 
HETATM 7 C C21 PEE . . . I 5 136.316 104.87 135.668 1 88.61 ? C21 PEE 308 A 1 
HETATM 8 C C20 PEE . . . I 5 136.12 105.977 136.691 1 88.2 ? C20 PEE 308 A 1 
HETATM 9 C C19 PEE . . . I 5 136.176 105.465 138.122 1 89.03 ? C19 PEE 308 A 1 
HETATM 10 C C18 PEE . . . I 5 135.306 106.293 139.05 1 87.87 ? C18 PEE 308 A 1 
HETATM 11 C C17 PEE . . . I 5 133.811 106.097 138.782 1 87.41 ? C17 PEE 308 A 1 
HETATM 12 C C16 PEE . . . I 5 133.144 105.493 140.014 1 88.12 ? C16 PEE 308 A 1 
HETATM 13 C C15 PEE . . . I 5 133.251 106.38 141.248 1 88.87 ? C15 PEE 308 A 1 
HETATM 14 C C14 PEE . . . I 5 132.24 105.975 142.315 1 88 ? C14 PEE 308 A 1 
HETATM 15 C C13 PEE . . . I 5 132.701 106.306 143.745 1 89.48 ? C13 PEE 308 A 1 
HETATM 16 C C12 PEE . . . I 5 132.315 105.203 144.753 1 89.31 ? C12 PEE 308 A 1 
HETATM 17 C C11 PEE . . . I 5 130.839 104.769 144.62 1 92.5 ? C11 PEE 308 A 1 
HETATM 18 C C10 PEE . . . I 5 130.091 104.992 145.914 1 92.92 ? C10 PEE 308 A 1 
HETATM 19 O O4 PEE . . . I 5 130.324 105.887 146.704 1 90.2 ? O4 PEE 308 A 1 
HETATM 20 O O2 PEE . . . I 5 129.079 104.103 146.149 1 95.02 ? O2 PEE 308 A 1 
HETATM 21 C C2 PEE . . . I 5 128.149 103.841 145.1 1 93.22 ? C2 PEE 308 A 1 
HETATM 22 C C1 PEE . . . I 5 127.238 102.678 145.601 1 90.01 ? C1 PEE 308 A 1 
HETATM 23 O O3P PEE . . . I 5 126.677 103.074 146.801 1 96 ? O3P PEE 308 A 1 
HETATM 24 P P PEE . . . I 5 125.126 102.702 147.277 1 107.98 ? P PEE 308 A 1 
HETATM 25 O O2P PEE . . . I 5 124.671 103.696 148.296 1 93.76 ? O2P PEE 308 A 1 
HETATM 26 O O1P PEE . . . I 5 124.45 102.019 146.149 1 89.79 ? O1P PEE 308 A 1 
HETATM 27 O O4P PEE . . . I 5 125.713 101.348 148.261 1 94.98 ? O4P PEE 308 A 1 
HETATM 28 C C4 PEE . . . I 5 126.705 101.571 149.157 1 90.68 ? C4 PEE 308 A 1 
HETATM 29 C C5 PEE . . . I 5 127.963 100.821 148.628 1 90.55 ? C5 PEE 308 A 1 
HETATM 30 N N PEE . . . I 5 129.135 101.178 149.525 1 88.14 ? N PEE 308 A 1 
HETATM 31 C C3 PEE . . . I 5 127.315 105.109 144.86 1 88.11 ? C3 PEE 308 A 1 
HETATM 32 O O3 PEE . . . I 5 126.723 105.044 143.576 1 90.44 ? O3 PEE 308 A 1 
HETATM 33 C C30 PEE . . . I 5 127.44 105.397 142.475 1 90.83 ? C30 PEE 308 A 1 
HETATM 34 O O5 PEE . . . I 5 128.214 106.339 142.525 1 87.82 ? O5 PEE 308 A 1 
HETATM 35 C C31 PEE . . . I 5 127.163 104.533 141.269 1 87.63 ? C31 PEE 308 A 1 
HETATM 36 C C32 PEE . . . I 5 128.19 104.821 140.162 1 88.42 ? C32 PEE 308 A 1 
HETATM 37 C C33 PEE . . . I 5 127.587 104.894 138.762 1 88.8 ? C33 PEE 308 A 1 
HETATM 38 C C34 PEE . . . I 5 127.991 106.166 138.002 1 88.08 ? C34 PEE 308 A 1 
HETATM 39 C C35 PEE . . . I 5 127.981 105.994 136.488 1 87.42 ? C35 PEE 308 A 1 
HETATM 40 C C36 PEE . . . I 5 127.179 107.08 135.779 1 84.07 ? C36 PEE 308 A 1 
HETATM 41 C C37 PEE . . . I 5 127.038 106.836 134.275 1 85.65 ? C37 PEE 308 A 1 
HETATM 42 C C38 PEE . . . I 5 126.931 108.152 133.512 1 85.42 ? C38 PEE 308 A 1 
HETATM 43 C C39 PEE . . . I 5 126.846 108.014 131.993 1 87.53 ? C39 PEE 308 A 1 
HETATM 44 C C40 PEE . . . I 5 127.727 106.91 131.394 1 87.79 ? C40 PEE 308 A 1 
HETATM 45 C C41 PEE . . . I 5 127.995 107.089 129.887 1 88.98 ? C41 PEE 308 A 1 
HETATM 46 C C42 PEE . . . I 5 129.45 106.759 129.476 1 90.75 ? C42 PEE 308 A 1 
HETATM 47 C C43 PEE . . . I 5 130.371 107.985 129.457 1 88.96 ? C43 PEE 308 A 1 
HETATM 48 C C44 PEE . . . I 5 131.791 107.725 129.975 1 85.54 ? C44 PEE 308 A 1 
HETATM 49 C C45 PEE . . . I 5 132.011 108.017 131.47 1 86.55 ? C45 PEE 308 A 1 
HETATM 50 C C46 PEE . . . I 5 132.724 106.89 132.207 1 86.37 ? C46 PEE 308 A 1 
HETATM 51 C C47 PEE . . . I 5 132.442 106.947 133.697 1 83.86 ? C47 PEE 308 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           51 
#