data_8GJC # _model_server_result.job_id U5qMIE7ev5cdx7iQ6k1wKA _model_server_result.datetime_utc '2024-11-28 15:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 8GJC # _exptl.entry_id 8GJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GJC _cell.length_a 38.164 _cell.length_b 38.164 _cell.length_c 32.054 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ORN 1 A ORN 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale2 A NE ORN 1 A ORN 1 1_555 C C MET . A MET 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale3 A C ASP 8 A ASP 8 1_555 A NE ORN 9 A ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale4 A C ORN 9 A ORN 9 1_555 A N GLY 10 A GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale5 A C ILE 12 A ILE 12 1_555 A N IML 13 A IML 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C IML 13 A IML 13 1_555 A N GLY 14 A GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C ORN 1 B ORN 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale8 B NE ORN 1 B ORN 1 1_555 F C MET . B MET 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale9 B C ASP 8 B ASP 8 1_555 B NE ORN 9 B ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 B C ORN 9 B ORN 9 1_555 B N GLY 10 B GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale11 B C ILE 12 B ILE 12 1_555 B N IML 13 B IML 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C IML 13 B IML 13 1_555 B N GLY 14 B GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 123 n n N H MET sing 124 n n N H2 MET sing 125 n n CA C MET sing 126 n n CA CB MET sing 127 n n CA HA MET sing 128 n n C O MET doub 129 n n C OXT MET sing 130 n n CB CG MET sing 131 n n CB HB2 MET sing 132 n n CB HB3 MET sing 133 n n CG SD MET sing 134 n n CG HG2 MET sing 135 n n CG HG3 MET sing 136 n n SD CE MET sing 137 n n CE HE1 MET sing 138 n n CE HE2 MET sing 139 n n CE HE3 MET sing 140 n n OXT HXT MET sing 141 n n # _atom_sites.entry_id 8GJC _atom_sites.fract_transf_matrix[1][1] 0.026203 _atom_sites.fract_transf_matrix[1][2] 0.015128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MET A 1 101 16 MET MET . D 3 TFA A 1 102 1 TFA TFA . E 3 TFA A 1 103 2 TFA TFA . F 2 MET B 1 101 16 MET MET . G 3 TFA B 1 102 3 TFA TFA . H 4 PEG B 1 103 1 PEG PEG . I 5 HOH A 1 201 24 HOH HOH . I 5 HOH A 2 202 30 HOH HOH . I 5 HOH A 3 203 27 HOH HOH . I 5 HOH A 4 204 5 HOH HOH . I 5 HOH A 5 205 4 HOH HOH . I 5 HOH A 6 206 12 HOH HOH . I 5 HOH A 7 207 14 HOH HOH . I 5 HOH A 8 208 31 HOH HOH . I 5 HOH A 9 209 3 HOH HOH . I 5 HOH A 10 210 6 HOH HOH . I 5 HOH A 11 211 7 HOH HOH . I 5 HOH A 12 212 8 HOH HOH . I 5 HOH A 13 213 10 HOH HOH . I 5 HOH A 14 214 16 HOH HOH . I 5 HOH A 15 215 13 HOH HOH . I 5 HOH A 16 216 26 HOH HOH . I 5 HOH A 17 217 29 HOH HOH . J 5 HOH B 1 201 18 HOH HOH . J 5 HOH B 2 202 25 HOH HOH . J 5 HOH B 3 203 11 HOH HOH . J 5 HOH B 4 204 19 HOH HOH . J 5 HOH B 5 205 1 HOH HOH . J 5 HOH B 6 206 20 HOH HOH . J 5 HOH B 7 207 21 HOH HOH . J 5 HOH B 8 208 28 HOH HOH . J 5 HOH B 9 209 15 HOH HOH . J 5 HOH B 10 210 22 HOH HOH . J 5 HOH B 11 211 9 HOH HOH . J 5 HOH B 12 212 2 HOH HOH . J 5 HOH B 13 213 23 HOH HOH . J 5 HOH B 14 214 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . F 2 16.64 16.922 0.867 1 12.33 ? N MET 101 B 1 HETATM 2 C CA MET . . . F 2 16.356 17.834 -0.239 1 13.4 ? CA MET 101 B 1 HETATM 3 C C MET . . . F 2 17.355 18.979 -0.31 1 11.2 ? C MET 101 B 1 HETATM 4 O O MET . . . F 2 17.372 19.863 0.544 1 11.58 ? O MET 101 B 1 HETATM 5 C CB MET . . . F 2 14.963 18.427 -0.106 1 14.9 ? CB MET 101 B 1 HETATM 6 C CG MET . . . F 2 14.553 19.229 -1.318 1 18.36 ? CG MET 101 B 1 HETATM 7 S SD MET . . . F 2 13.004 20.071 -1.038 1 21.44 ? SD MET 101 B 1 HETATM 8 C CE MET . . . F 2 11.835 18.756 -1.386 1 19.27 ? CE MET 101 B 1 HETATM 9 H H MET . . . F 2 16.85 17.317 1.601 1 14.96 ? H MET 101 B 1 HETATM 10 H HA MET . . . F 2 16.407 17.314 -1.057 1 16.26 ? HA MET 101 B 1 HETATM 11 H HB2 MET . . . F 2 14.323 17.707 0.008 1 18.05 ? HB2 MET 101 B 1 HETATM 12 H HB3 MET . . . F 2 14.942 19.015 0.664 1 18.05 ? HB3 MET 101 B 1 HETATM 13 H HG2 MET . . . F 2 15.234 19.893 -1.51 1 22.2 ? HG2 MET 101 B 1 HETATM 14 H HG3 MET . . . F 2 14.447 18.634 -2.077 1 22.2 ? HG3 MET 101 B 1 HETATM 15 H HE1 MET . . . F 2 10.941 19.129 -1.422 1 23.29 ? HE1 MET 101 B 1 HETATM 16 H HE2 MET . . . F 2 12.059 18.352 -2.239 1 23.29 ? HE2 MET 101 B 1 HETATM 17 H HE3 MET . . . F 2 11.888 18.091 -0.682 1 23.29 ? HE3 MET 101 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 729 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #