data_8GJC # _model_server_result.job_id l8bTYYQvQZTCHKJj_P2Ilw _model_server_result.datetime_utc '2024-11-28 15:58:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 8GJC # _exptl.entry_id 8GJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.023 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'trifluoroacetic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GJC _cell.length_a 38.164 _cell.length_b 38.164 _cell.length_c 32.054 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ORN 1 A ORN 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale2 A NE ORN 1 A ORN 1 1_555 C C MET . A MET 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale3 A C ASP 8 A ASP 8 1_555 A NE ORN 9 A ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale4 A C ORN 9 A ORN 9 1_555 A N GLY 10 A GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale5 A C ILE 12 A ILE 12 1_555 A N IML 13 A IML 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C IML 13 A IML 13 1_555 A N GLY 14 A GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C ORN 1 B ORN 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale8 B NE ORN 1 B ORN 1 1_555 F C MET . B MET 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale9 B C ASP 8 B ASP 8 1_555 B NE ORN 9 B ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 B C ORN 9 B ORN 9 1_555 B N GLY 10 B GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale11 B C ILE 12 B ILE 12 1_555 B N IML 13 B IML 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C IML 13 B IML 13 1_555 B N GLY 14 B GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H F3 O2' _chem_comp.formula_weight 114.023 _chem_comp.id TFA _chem_comp.mon_nstd_flag . _chem_comp.name 'trifluoroacetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TFA sing 201 n n C1 O TFA doub 202 n n C1 OXT TFA sing 203 n n C2 F1 TFA sing 204 n n C2 F2 TFA sing 205 n n C2 F3 TFA sing 206 n n OXT HXT TFA sing 207 n n # _atom_sites.entry_id 8GJC _atom_sites.fract_transf_matrix[1][1] 0.026203 _atom_sites.fract_transf_matrix[1][2] 0.015128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MET A 1 101 16 MET MET . D 3 TFA A 1 102 1 TFA TFA . E 3 TFA A 1 103 2 TFA TFA . F 2 MET B 1 101 16 MET MET . G 3 TFA B 1 102 3 TFA TFA . H 4 PEG B 1 103 1 PEG PEG . I 5 HOH A 1 201 24 HOH HOH . I 5 HOH A 2 202 30 HOH HOH . I 5 HOH A 3 203 27 HOH HOH . I 5 HOH A 4 204 5 HOH HOH . I 5 HOH A 5 205 4 HOH HOH . I 5 HOH A 6 206 12 HOH HOH . I 5 HOH A 7 207 14 HOH HOH . I 5 HOH A 8 208 31 HOH HOH . I 5 HOH A 9 209 3 HOH HOH . I 5 HOH A 10 210 6 HOH HOH . I 5 HOH A 11 211 7 HOH HOH . I 5 HOH A 12 212 8 HOH HOH . I 5 HOH A 13 213 10 HOH HOH . I 5 HOH A 14 214 16 HOH HOH . I 5 HOH A 15 215 13 HOH HOH . I 5 HOH A 16 216 26 HOH HOH . I 5 HOH A 17 217 29 HOH HOH . J 5 HOH B 1 201 18 HOH HOH . J 5 HOH B 2 202 25 HOH HOH . J 5 HOH B 3 203 11 HOH HOH . J 5 HOH B 4 204 19 HOH HOH . J 5 HOH B 5 205 1 HOH HOH . J 5 HOH B 6 206 20 HOH HOH . J 5 HOH B 7 207 21 HOH HOH . J 5 HOH B 8 208 28 HOH HOH . J 5 HOH B 9 209 15 HOH HOH . J 5 HOH B 10 210 22 HOH HOH . J 5 HOH B 11 211 9 HOH HOH . J 5 HOH B 12 212 2 HOH HOH . J 5 HOH B 13 213 23 HOH HOH . J 5 HOH B 14 214 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TFA . . . D 3 3.087 25.352 4.809 1 51.92 ? C1 TFA 102 A 1 HETATM 2 C C2 TFA . . . D 3 3.676 25.421 3.401 1 52.8 ? C2 TFA 102 A 1 HETATM 3 O O TFA . . . D 3 2.288 24.442 5.158 1 49.85 ? O TFA 102 A 1 HETATM 4 F F1 TFA . . . D 3 3.403 26.664 2.903 1 58.03 ? F1 TFA 102 A 1 HETATM 5 F F2 TFA . . . D 3 5.025 25.255 3.527 1 40.92 ? F2 TFA 102 A 1 HETATM 6 F F3 TFA . . . D 3 3.172 24.469 2.559 1 40.75 ? F3 TFA 102 A 1 HETATM 7 O OXT TFA . . . D 3 3.433 26.243 5.628 1 39.25 ? OXT TFA 102 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 390 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #