data_8GJC # _model_server_result.job_id 6T6OlJmXYZ1oGLriLEFt2w _model_server_result.datetime_utc '2024-12-01 07:03:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":103}' # _entry.id 8GJC # _exptl.entry_id 8GJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8GJC _cell.length_a 38.164 _cell.length_b 38.164 _cell.length_c 32.054 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ORN 1 A ORN 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale2 A NE ORN 1 A ORN 1 1_555 C C MET . A MET 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale3 A C ASP 8 A ASP 8 1_555 A NE ORN 9 A ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale4 A C ORN 9 A ORN 9 1_555 A N GLY 10 A GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale5 A C ILE 12 A ILE 12 1_555 A N IML 13 A IML 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C IML 13 A IML 13 1_555 A N GLY 14 A GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C ORN 1 B ORN 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale8 B NE ORN 1 B ORN 1 1_555 F C MET . B MET 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.372 ? covale ? covale9 B C ASP 8 B ASP 8 1_555 B NE ORN 9 B ORN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 B C ORN 9 B ORN 9 1_555 B N GLY 10 B GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale11 B C ILE 12 B ILE 12 1_555 B N IML 13 B IML 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C IML 13 B IML 13 1_555 B N GLY 14 B GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 162 n n C1 C2 PEG sing 163 n n C1 H11 PEG sing 164 n n C1 H12 PEG sing 165 n n O1 HO1 PEG sing 166 n n C2 O2 PEG sing 167 n n C2 H21 PEG sing 168 n n C2 H22 PEG sing 169 n n O2 C3 PEG sing 170 n n C3 C4 PEG sing 171 n n C3 H31 PEG sing 172 n n C3 H32 PEG sing 173 n n C4 O4 PEG sing 174 n n C4 H41 PEG sing 175 n n C4 H42 PEG sing 176 n n O4 HO4 PEG sing 177 n n # _atom_sites.entry_id 8GJC _atom_sites.fract_transf_matrix[1][1] 0.026203 _atom_sites.fract_transf_matrix[1][2] 0.015128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MET A 1 101 16 MET MET . D 3 TFA A 1 102 1 TFA TFA . E 3 TFA A 1 103 2 TFA TFA . F 2 MET B 1 101 16 MET MET . G 3 TFA B 1 102 3 TFA TFA . H 4 PEG B 1 103 1 PEG PEG . I 5 HOH A 1 201 24 HOH HOH . I 5 HOH A 2 202 30 HOH HOH . I 5 HOH A 3 203 27 HOH HOH . I 5 HOH A 4 204 5 HOH HOH . I 5 HOH A 5 205 4 HOH HOH . I 5 HOH A 6 206 12 HOH HOH . I 5 HOH A 7 207 14 HOH HOH . I 5 HOH A 8 208 31 HOH HOH . I 5 HOH A 9 209 3 HOH HOH . I 5 HOH A 10 210 6 HOH HOH . I 5 HOH A 11 211 7 HOH HOH . I 5 HOH A 12 212 8 HOH HOH . I 5 HOH A 13 213 10 HOH HOH . I 5 HOH A 14 214 16 HOH HOH . I 5 HOH A 15 215 13 HOH HOH . I 5 HOH A 16 216 26 HOH HOH . I 5 HOH A 17 217 29 HOH HOH . J 5 HOH B 1 201 18 HOH HOH . J 5 HOH B 2 202 25 HOH HOH . J 5 HOH B 3 203 11 HOH HOH . J 5 HOH B 4 204 19 HOH HOH . J 5 HOH B 5 205 1 HOH HOH . J 5 HOH B 6 206 20 HOH HOH . J 5 HOH B 7 207 21 HOH HOH . J 5 HOH B 8 208 28 HOH HOH . J 5 HOH B 9 209 15 HOH HOH . J 5 HOH B 10 210 22 HOH HOH . J 5 HOH B 11 211 9 HOH HOH . J 5 HOH B 12 212 2 HOH HOH . J 5 HOH B 13 213 23 HOH HOH . J 5 HOH B 14 214 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 4 4.713 13.725 10.086 1 27.52 ? C1 PEG 103 B 1 HETATM 2 O O1 PEG . . . H 4 4.807 13.041 8.851 1 16.7 ? O1 PEG 103 B 1 HETATM 3 C C2 PEG . . . H 4 5.894 13.479 10.971 1 32.25 ? C2 PEG 103 B 1 HETATM 4 O O2 PEG . . . H 4 5.643 14.041 12.249 1 37.43 ? O2 PEG 103 B 1 HETATM 5 C C3 PEG . . . H 4 6.518 15.118 12.551 1 42.6 ? C3 PEG 103 B 1 HETATM 6 C C4 PEG . . . H 4 7.898 14.597 12.813 1 32.56 ? C4 PEG 103 B 1 HETATM 7 O O4 PEG . . . H 4 7.853 13.241 13.217 1 35.99 ? O4 PEG 103 B 1 HETATM 8 H H11 PEG . . . H 4 4.65 14.677 9.91 1 33.2 ? H11 PEG 103 B 1 HETATM 9 H H12 PEG . . . H 4 3.913 13.428 10.546 1 33.2 ? H12 PEG 103 B 1 HETATM 10 H HO1 PEG . . . H 4 4.638 12.213 8.881 1 20.21 ? HO1 PEG 103 B 1 HETATM 11 H H21 PEG . . . H 4 6.041 12.524 11.059 1 38.87 ? H21 PEG 103 B 1 HETATM 12 H H22 PEG . . . H 4 6.682 13.892 10.583 1 38.87 ? H22 PEG 103 B 1 HETATM 13 H H31 PEG . . . H 4 6.543 15.732 11.8 1 51.29 ? H31 PEG 103 B 1 HETATM 14 H H32 PEG . . . H 4 6.195 15.583 13.338 1 51.29 ? H32 PEG 103 B 1 HETATM 15 H H41 PEG . . . H 4 8.31 15.125 13.515 1 39.24 ? H41 PEG 103 B 1 HETATM 16 H H42 PEG . . . H 4 8.425 14.67 12.003 1 39.24 ? H42 PEG 103 B 1 HETATM 17 H HO4 PEG . . . H 4 8.431 12.748 12.834 1 43.36 ? HO4 PEG 103 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #