data_8GJH
#
_model_server_result.job_id            OaLgbGyjxU2wmwyhrq8now 
_model_server_result.datetime_utc      '2024-11-14 03:55:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gjh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1100}' 
#
_entry.id    8GJH 
#
_exptl.entry_id    8GJH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              580.285 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         62.99 
_cell.angle_beta          71.66 
_cell.angle_gamma         77.76 
_cell.entry_id            8GJH 
_cell.length_a            90.826 
_cell.length_b            129.439 
_cell.length_c            140.188 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GJH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C15 H22 N2 O18 P2' 
_chem_comp.formula_weight    580.285 
_chem_comp.id                UGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'UDP-GLUCURONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1' C2' UGA sing 356 n n 
C1' O5' UGA sing 357 n n 
C1' O3B UGA sing 358 n n 
C1' "H1'1" UGA sing 359 n n 
C2' O2' UGA sing 360 n n 
C2' C3' UGA sing 361 n n 
C2' "H2'1" UGA sing 362 n n 
O2' "HO'2" UGA sing 363 n n 
C3' O3' UGA sing 364 n n 
C3' C4' UGA sing 365 n n 
C3' "H3'1" UGA sing 366 n n 
O3' "HO'3" UGA sing 367 n n 
C4' O4' UGA sing 368 n n 
C4' C5' UGA sing 369 n n 
C4' "H4'1" UGA sing 370 n n 
O4' "HO'4" UGA sing 371 n n 
C5' O5' UGA sing 372 n n 
C5' C6' UGA sing 373 n n 
C5' "H5'1" UGA sing 374 n n 
C6' "O'P" UGA doub 375 n n 
C6' "O'Q" UGA sing 376 n n 
"O'Q" "HO'6" UGA sing 377 n n 
PB O1B UGA doub 378 n n 
PB O2B UGA sing 379 n n 
PB O3B UGA sing 380 n n 
PB O3A UGA sing 381 n n 
O2B HOB2 UGA sing 382 n n 
O3A PA UGA sing 383 n n 
PA O1A UGA doub 384 n n 
PA O2A UGA sing 385 n n 
PA O5D UGA sing 386 n n 
O2A HOA2 UGA sing 387 n n 
O5D C5D UGA sing 388 n n 
C5D C4D UGA sing 389 n n 
C5D H5A1 UGA sing 390 n n 
C5D "H5'2" UGA sing 391 n n 
C4D O4D UGA sing 392 n n 
C4D C3D UGA sing 393 n n 
C4D H4A1 UGA sing 394 n n 
O4D C1D UGA sing 395 n n 
C3D O3D UGA sing 396 n n 
C3D C2D UGA sing 397 n n 
C3D H3A1 UGA sing 398 n n 
O3D HOA3 UGA sing 399 n n 
C2D O2D UGA sing 400 n n 
C2D C1D UGA sing 401 n n 
C2D H2A1 UGA sing 402 n n 
O2D HOC2 UGA sing 403 n n 
C1D N1 UGA sing 404 n n 
C1D H1A1 UGA sing 405 n n 
N1 C6 UGA sing 406 n y 
N1 C2 UGA sing 407 n y 
C6 C5 UGA doub 408 n y 
C6 H61 UGA sing 409 n n 
C2 O2 UGA doub 410 n n 
C2 N3 UGA sing 411 n y 
N3 C4 UGA sing 412 n y 
N3 HN3 UGA sing 413 n n 
C4 O4 UGA doub 414 n n 
C4 C5 UGA sing 415 n y 
C5 H51 UGA sing 416 n n 
#
_atom_sites.entry_id                     8GJH 
_atom_sites.fract_transf_matrix[1][1]    0.01101 
_atom_sites.fract_transf_matrix[1][2]    -0.002389 
_atom_sites.fract_transf_matrix[1][3]    -0.002919 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007905 
_atom_sites.fract_transf_matrix[2][3]    -0.003634 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 UGA A 1 1100 1100 UGA UGA . 
H 2 UGA B 1 1100 1100 UGA UGA . 
I 2 UGA C 1 1100 1100 UGA UGA . 
J 2 UGA D 1 1100 1100 UGA UGA . 
K 2 UGA E 1 1100 1100 UGA UGA . 
L 2 UGA F 1 1100 1100 UGA UGA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' UGA . . . K 2 -21.52 59.818 180.421 1 99.31 ? C1' UGA 1100 E 1 
HETATM 2 C C2' UGA . . . K 2 -22.192 59.293 179.164 1 99.38 ? C2' UGA 1100 E 1 
HETATM 3 O O2' UGA . . . K 2 -23.537 59.133 179.437 1 100.86 ? O2' UGA 1100 E 1 
HETATM 4 C C3' UGA . . . K 2 -21.663 57.989 178.675 1 95.06 ? C3' UGA 1100 E 1 
HETATM 5 O O3' UGA . . . K 2 -21.997 57.854 177.335 1 106.45 ? O3' UGA 1100 E 1 
HETATM 6 C C4' UGA . . . K 2 -20.192 57.929 178.785 1 100.61 ? C4' UGA 1100 E 1 
HETATM 7 O O4' UGA . . . K 2 -19.74 56.667 178.43 1 100 ? O4' UGA 1100 E 1 
HETATM 8 C C5' UGA . . . K 2 -19.848 58.207 180.203 1 106.09 ? C5' UGA 1100 E 1 
HETATM 9 O O5' UGA . . . K 2 -20.157 59.516 180.495 1 100.74 ? O5' UGA 1100 E 1 
HETATM 10 C C6' UGA . . . K 2 -18.389 57.956 180.419 1 106.16 ? C6' UGA 1100 E 1 
HETATM 11 O "O'P" UGA . . . K 2 -17.711 58.753 179.721 1 112.11 ? "O'P" UGA 1100 E 1 
HETATM 12 O "O'Q" UGA . . . K 2 -18.249 57.014 181.243 1 102.76 ? "O'Q" UGA 1100 E 1 
HETATM 13 P PB UGA . . . K 2 -21.981 60.105 182.923 1 93.16 ? PB UGA 1100 E 1 
HETATM 14 O O1B UGA . . . K 2 -20.549 59.907 183.359 1 100.54 ? O1B UGA 1100 E 1 
HETATM 15 O O2B UGA . . . K 2 -22.895 59.522 183.97 1 97.27 ? O2B UGA 1100 E 1 
HETATM 16 O O3B UGA . . . K 2 -22.222 59.371 181.545 1 101.31 ? O3B UGA 1100 E 1 
HETATM 17 O O3A UGA . . . K 2 -22.305 61.641 182.735 1 99.9 ? O3A UGA 1100 E 1 
HETATM 18 P PA UGA . . . K 2 -21.327 62.809 183.153 1 97.82 ? PA UGA 1100 E 1 
HETATM 19 O O1A UGA . . . K 2 -21.744 64.038 182.371 1 95.39 ? O1A UGA 1100 E 1 
HETATM 20 O O2A UGA . . . K 2 -19.897 62.475 182.794 1 90.68 ? O2A UGA 1100 E 1 
HETATM 21 O O5D UGA . . . K 2 -21.452 63.133 184.693 1 111.7 ? O5D UGA 1100 E 1 
HETATM 22 C C5D UGA . . . K 2 -21.578 62.129 185.651 1 107.61 ? C5D UGA 1100 E 1 
HETATM 23 C C4D UGA . . . K 2 -22.675 62.526 186.611 1 97.88 ? C4D UGA 1100 E 1 
HETATM 24 O O4D UGA . . . K 2 -22.247 63.552 187.457 1 87.8 ? O4D UGA 1100 E 1 
HETATM 25 C C3D UGA . . . K 2 -23.875 63.055 185.904 1 114.33 ? C3D UGA 1100 E 1 
HETATM 26 O O3D UGA . . . K 2 -24.728 62.054 185.516 1 115.24 ? O3D UGA 1100 E 1 
HETATM 27 C C2D UGA . . . K 2 -24.495 63.923 186.913 1 108.63 ? C2D UGA 1100 E 1 
HETATM 28 O O2D UGA . . . K 2 -25.453 63.231 187.625 1 102.75 ? O2D UGA 1100 E 1 
HETATM 29 C C1D UGA . . . K 2 -23.355 64.343 187.775 1 101.58 ? C1D UGA 1100 E 1 
HETATM 30 N N1 UGA . . . K 2 -23.063 65.764 187.633 1 102.29 ? N1 UGA 1100 E 1 
HETATM 31 C C6 UGA . . . K 2 -22.891 66.293 186.386 1 100.5 ? C6 UGA 1100 E 1 
HETATM 32 C C2 UGA . . . K 2 -22.97 66.565 188.726 1 99.43 ? C2 UGA 1100 E 1 
HETATM 33 O O2 UGA . . . K 2 -23.127 66.096 189.84 1 98.98 ? O2 UGA 1100 E 1 
HETATM 34 N N3 UGA . . . K 2 -22.703 67.886 188.587 1 96.69 ? N3 UGA 1100 E 1 
HETATM 35 C C4 UGA . . . K 2 -22.528 68.431 187.379 1 92.96 ? C4 UGA 1100 E 1 
HETATM 36 O O4 UGA . . . K 2 -22.288 69.627 187.273 1 92.79 ? O4 UGA 1100 E 1 
HETATM 37 C C5 UGA . . . K 2 -22.617 67.651 186.254 1 95.71 ? C5 UGA 1100 E 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           240 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#