data_8GJT # _model_server_result.job_id O3G5LzeU2QSVfV3bDL_TAg _model_server_result.datetime_utc '2024-11-24 18:49:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 8GJT # _exptl.entry_id 8GJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.913 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N-(4-chloro-3-fluorophenyl)-1-[(3R,5S)-3,4,5-trimethylpiperazine-1-carbonyl]piperidine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GJT _cell.length_a 64.67 _cell.length_b 66.01 _cell.length_c 87.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 A SG CYS 33 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 78 A CYS 119 1_555 A SG CYS 91 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 104 A CYS 218 1_555 A SG CYS 133 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 114 A CYS 228 1_555 A SG CYS 125 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 182 A CYS 296 1_555 A SG CYS 201 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 A SG CYS 247 A CYS 378 1_555 A SG CYS 308 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 254 A CYS 385 1_555 A SG CYS 281 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 264 A CYS 395 1_555 A SG CYS 273 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 120 A ASN 234 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 127 A ASN 241 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 148 A ASN 262 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 162 A ASN 276 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 175 A ASN 289 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 181 A ASN 295 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 A ND2 ASN 225 A ASN 355 1_555 I C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 A ND2 ASN 255 A ASN 386 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 A ND2 ASN 311 A ASN 448 1_555 J C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 A ND2 ASN 324 A ASN 461 1_555 K C1 NAG . A NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C20 H28 Cl F N4 O2' _chem_comp.formula_weight 410.913 _chem_comp.id ZNF _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N-(4-chloro-3-fluorophenyl)-1-[(3R,5S)-3,4,5-trimethylpiperazine-1-carbonyl]piperidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C18 ZNF sing 437 n n C20 C18 ZNF doub 438 n y C20 C21 ZNF sing 439 n y C18 C16 ZNF sing 440 n y C21 C14 ZNF doub 441 n y C16 F17 ZNF sing 442 n n C16 C15 ZNF doub 443 n y C14 C15 ZNF sing 444 n y C14 N13 ZNF sing 445 n n N13 C11 ZNF sing 446 n n C11 O12 ZNF doub 447 n n C11 C10 ZNF sing 448 n n C22 C10 ZNF sing 449 n n C22 C23 ZNF sing 450 n n C10 C09 ZNF sing 451 n n C23 C26 ZNF sing 452 n n C09 N08 ZNF sing 453 n n C26 N08 ZNF sing 454 n n N08 C07 ZNF sing 455 n n C28 N06 ZNF sing 456 n n C28 C29 ZNF sing 457 n n C07 N06 ZNF sing 458 n n C07 O27 ZNF doub 459 n n N06 C05 ZNF sing 460 n n C30 C29 ZNF sing 461 n n C05 C03 ZNF sing 462 n n C29 N02 ZNF sing 463 n n N02 C03 ZNF sing 464 n n N02 C01 ZNF sing 465 n n C03 C04 ZNF sing 466 n n C10 H1 ZNF sing 467 n n N13 H2 ZNF sing 468 n n C20 H3 ZNF sing 469 n n C21 H4 ZNF sing 470 n n C22 H5 ZNF sing 471 n n C22 H6 ZNF sing 472 n n C01 H7 ZNF sing 473 n n C01 H8 ZNF sing 474 n n C01 H9 ZNF sing 475 n n C03 H10 ZNF sing 476 n n C04 H11 ZNF sing 477 n n C04 H12 ZNF sing 478 n n C04 H13 ZNF sing 479 n n C05 H14 ZNF sing 480 n n C05 H15 ZNF sing 481 n n C09 H16 ZNF sing 482 n n C09 H17 ZNF sing 483 n n C15 H18 ZNF sing 484 n n C23 H19 ZNF sing 485 n n C23 H20 ZNF sing 486 n n C26 H21 ZNF sing 487 n n C26 H22 ZNF sing 488 n n C28 H23 ZNF sing 489 n n C28 H24 ZNF sing 490 n n C29 H25 ZNF sing 491 n n C30 H26 ZNF sing 492 n n C30 H27 ZNF sing 493 n n C30 H28 ZNF sing 494 n n # _atom_sites.entry_id 8GJT _atom_sites.fract_transf_matrix[1][1] 0.015463 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 502 NAG NAG . C 2 NAG A 1 502 503 NAG NAG . D 2 NAG A 1 503 504 NAG NAG . E 2 NAG A 1 504 505 NAG NAG . F 2 NAG A 1 505 506 NAG NAG . G 2 NAG A 1 506 507 NAG NAG . H 2 NAG A 1 507 509 NAG NAG . I 2 NAG A 1 508 510 NAG NAG . J 2 NAG A 1 509 511 NAG NAG . K 2 NAG A 1 510 513 NAG NAG . L 3 ZNF A 1 511 1 ZNF MW6 . M 4 EPE A 1 512 1 EPE EPE . N 5 CL A 1 513 1 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ZNF . . . L 3 -2.285 16.351 -13.127 1 70.52 ? C10 ZNF 511 A 1 HETATM 2 C C11 ZNF . . . L 3 -3.417 15.997 -14.153 1 68.41 ? C11 ZNF 511 A 1 HETATM 3 N N13 ZNF . . . L 3 -3.021 16.042 -15.555 1 69.74 ? N13 ZNF 511 A 1 HETATM 4 C C14 ZNF . . . L 3 -3.851 15.759 -16.716 1 66.1 ? C14 ZNF 511 A 1 HETATM 5 C C16 ZNF . . . L 3 -5.961 15.594 -17.841 1 61.82 ? C16 ZNF 511 A 1 HETATM 6 C C20 ZNF . . . L 3 -3.935 15.092 -19.026 1 56.97 ? C20 ZNF 511 A 1 HETATM 7 C C21 ZNF . . . L 3 -3.208 15.371 -17.882 1 61.21 ? C21 ZNF 511 A 1 HETATM 8 C C22 ZNF . . . L 3 -1.83 17.721 -13.431 1 74.53 ? C22 ZNF 511 A 1 HETATM 9 C C01 ZNF . . . L 3 -2.393 12.046 -7.103 1 81.77 ? C01 ZNF 511 A 1 HETATM 10 C C03 ZNF . . . L 3 -0.508 12.559 -8.016 1 85.68 ? C03 ZNF 511 A 1 HETATM 11 C C04 ZNF . . . L 3 0.432 11.341 -7.743 1 97.56 ? C04 ZNF 511 A 1 HETATM 12 C C05 ZNF . . . L 3 0.127 13.301 -9.21 1 87.7 ? C05 ZNF 511 A 1 HETATM 13 C C07 ZNF . . . L 3 -0.55 15.525 -10.17 1 77.47 ? C07 ZNF 511 A 1 HETATM 14 C C09 ZNF . . . L 3 -2.693 16.217 -11.647 1 72.88 ? C09 ZNF 511 A 1 HETATM 15 C C15 ZNF . . . L 3 -5.233 15.876 -16.695 1 63.01 ? C15 ZNF 511 A 1 HETATM 16 C C18 ZNF . . . L 3 -5.314 15.205 -19.001 1 64.63 ? C18 ZNF 511 A 1 HETATM 17 C C23 ZNF . . . L 3 -0.768 18.219 -12.529 1 79.32 ? C23 ZNF 511 A 1 HETATM 18 C C26 ZNF . . . L 3 -1.037 17.895 -11.057 1 81.39 ? C26 ZNF 511 A 1 HETATM 19 C C28 ZNF . . . L 3 -1.86 13.258 -10.38 1 90.38 ? C28 ZNF 511 A 1 HETATM 20 C C29 ZNF . . . L 3 -2.629 12.761 -9.133 1 85.75 ? C29 ZNF 511 A 1 HETATM 21 C C30 ZNF . . . L 3 -3.786 11.812 -9.595 1 83.67 ? C30 ZNF 511 A 1 HETATM 22 F F17 ZNF . . . L 3 -7.322 15.701 -17.839 1 64.19 ? F17 ZNF 511 A 1 HETATM 23 N N02 ZNF . . . L 3 -1.819 12.074 -8.207 1 84.56 ? N02 ZNF 511 A 1 HETATM 24 N N06 ZNF . . . L 3 -0.785 14.091 -9.954 1 87.25 ? N06 ZNF 511 A 1 HETATM 25 N N08 ZNF . . . L 3 -1.416 16.458 -10.902 1 72.59 ? N08 ZNF 511 A 1 HETATM 26 O O12 ZNF . . . L 3 -4.512 15.717 -13.798 1 68.16 ? O12 ZNF 511 A 1 HETATM 27 O O27 ZNF . . . L 3 0.433 15.982 -9.694 1 78.11 ? O27 ZNF 511 A 1 HETATM 28 CL CL1 ZNF . . . L 3 -6.274 14.849 -20.461 1 82.82 ? CL1 ZNF 511 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #