data_8GJU # _model_server_result.job_id EJYvMp-LLSO8rASFjuCirw _model_server_result.datetime_utc '2024-11-25 06:47:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":602}' # _entry.id 8GJU # _exptl.entry_id 8GJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.53 _cell.angle_gamma 90 _cell.entry_id 8GJU _cell.length_a 95.806 _cell.length_b 221.872 _cell.length_c 121.824 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,U,V 1 1 E,F,G,H,O,P,Q,R,S,T,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 Q N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 88 D SER 157 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 A OD1 ASP 124 D ASP 193 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A OE2 GLU 173 D GLU 242 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 I O1B GDP . D GDP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 J MG MG . D MG 502 1_555 U O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 J MG MG . D MG 502 1_555 U O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B OG SER 88 F SER 157 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc8 B OD1 ASP 124 F ASP 193 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc9 B OE2 GLU 173 F GLU 242 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc10 K O1B GDP . F GDP 601 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc11 L MG MG . F MG 602 1_555 V O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc12 F OG SER 88 A SER 157 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc13 F OD1 ASP 124 A ASP 193 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc14 F OE2 GLU 173 A GLU 242 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc15 P O2B GDP . A GDP 501 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc16 Q MG MG . A MG 502 1_555 W O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc17 G OG SER 88 B SER 157 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc18 G OD1 ASP 124 B ASP 193 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc19 G OE2 GLU 173 B GLU 242 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc20 R O2B GDP . B GDP 501 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc21 S MG MG . B MG 502 1_555 X O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc22 S MG MG . B MG 502 1_555 X O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GJU _atom_sites.fract_transf_matrix[1][1] 0.010438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002901 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GDP D 1 501 600 GDP GDP . J 4 MG D 1 502 2 MG MG . K 3 GDP F 1 601 601 GDP GDP . L 4 MG F 1 602 9 MG MG . M 5 COA J 1 801 1002 COA COA . N 5 COA K 1 801 1003 COA COA . O 5 COA L 1 801 1004 COA COA . P 3 GDP A 1 501 602 GDP GDP . Q 4 MG A 1 502 10 MG MG . R 3 GDP B 1 501 603 GDP GDP . S 4 MG B 1 502 1 MG MG . T 5 COA H 1 1001 1001 COA COA . U 6 HOH D 1 601 1 HOH HOH . U 6 HOH D 2 602 5 HOH HOH . U 6 HOH D 3 603 12 HOH HOH . V 6 HOH F 1 701 7 HOH HOH . V 6 HOH F 2 702 2 HOH HOH . W 6 HOH A 1 601 11 HOH HOH . W 6 HOH A 2 602 3 HOH HOH . W 6 HOH A 3 603 9 HOH HOH . X 6 HOH B 1 601 6 HOH HOH . X 6 HOH B 2 602 4 HOH HOH . X 6 HOH B 3 603 8 HOH HOH . X 6 HOH B 4 604 14 HOH HOH . Y 6 HOH H 1 1101 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 4 _atom_site.Cartn_x 38.421 _atom_site.Cartn_y -116.776 _atom_site.Cartn_z 47.02 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id F _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #