data_8GJU # _model_server_result.job_id 2qH4lQaY5fBbHgD3kEub_g _model_server_result.datetime_utc '2024-11-25 06:26:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":801}' # _entry.id 8GJU # _exptl.entry_id 8GJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 5 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.53 _cell.angle_gamma 90 _cell.entry_id 8GJU _cell.length_a 95.806 _cell.length_b 221.872 _cell.length_c 121.824 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,U,V 1 1 E,F,G,H,O,P,Q,R,S,T,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 O N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 88 D SER 157 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 A OD1 ASP 124 D ASP 193 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A OE2 GLU 173 D GLU 242 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 I O1B GDP . D GDP 501 1_555 J MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 J MG MG . D MG 502 1_555 U O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 J MG MG . D MG 502 1_555 U O HOH . D HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B OG SER 88 F SER 157 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc8 B OD1 ASP 124 F ASP 193 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc9 B OE2 GLU 173 F GLU 242 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc10 K O1B GDP . F GDP 601 1_555 L MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc11 L MG MG . F MG 602 1_555 V O HOH . F HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc12 F OG SER 88 A SER 157 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc13 F OD1 ASP 124 A ASP 193 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc14 F OE2 GLU 173 A GLU 242 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc15 P O2B GDP . A GDP 501 1_555 Q MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc16 Q MG MG . A MG 502 1_555 W O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc17 G OG SER 88 B SER 157 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc18 G OD1 ASP 124 B ASP 193 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc19 G OE2 GLU 173 B GLU 242 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc20 R O2B GDP . B GDP 501 1_555 S MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc21 S MG MG . B MG 502 1_555 X O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc22 S MG MG . B MG 502 1_555 X O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8GJU _atom_sites.fract_transf_matrix[1][1] 0.010438 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002901 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GDP D 1 501 600 GDP GDP . J 4 MG D 1 502 2 MG MG . K 3 GDP F 1 601 601 GDP GDP . L 4 MG F 1 602 9 MG MG . M 5 COA J 1 801 1002 COA COA . N 5 COA K 1 801 1003 COA COA . O 5 COA L 1 801 1004 COA COA . P 3 GDP A 1 501 602 GDP GDP . Q 4 MG A 1 502 10 MG MG . R 3 GDP B 1 501 603 GDP GDP . S 4 MG B 1 502 1 MG MG . T 5 COA H 1 1001 1001 COA COA . U 6 HOH D 1 601 1 HOH HOH . U 6 HOH D 2 602 5 HOH HOH . U 6 HOH D 3 603 12 HOH HOH . V 6 HOH F 1 701 7 HOH HOH . V 6 HOH F 2 702 2 HOH HOH . W 6 HOH A 1 601 11 HOH HOH . W 6 HOH A 2 602 3 HOH HOH . W 6 HOH A 3 603 9 HOH HOH . X 6 HOH B 1 601 6 HOH HOH . X 6 HOH B 2 602 4 HOH HOH . X 6 HOH B 3 603 8 HOH HOH . X 6 HOH B 4 604 14 HOH HOH . Y 6 HOH H 1 1101 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . O 5 69.302 -93.558 95.892 1 55.99 ? N1A COA 801 L 1 HETATM 2 C C2A COA . . . O 5 69.695 -94.889 95.963 1 53.49 ? C2A COA 801 L 1 HETATM 3 N N3A COA . . . O 5 70.919 -95.426 95.852 1 48.36 ? N3A COA 801 L 1 HETATM 4 C C4A COA . . . O 5 71.891 -94.476 95.635 1 46.29 ? C4A COA 801 L 1 HETATM 5 C C5A COA . . . O 5 71.645 -93.064 95.536 1 56.54 ? C5A COA 801 L 1 HETATM 6 C C6A COA . . . O 5 70.306 -92.658 95.676 1 57.96 ? C6A COA 801 L 1 HETATM 7 N N6A COA . . . O 5 69.988 -91.316 95.594 1 51.34 ? N6A COA 801 L 1 HETATM 8 N N7A COA . . . O 5 72.836 -92.358 95.312 1 72.36 ? N7A COA 801 L 1 HETATM 9 C C8A COA . . . O 5 73.773 -93.331 95.278 1 72.44 ? C8A COA 801 L 1 HETATM 10 N N9A COA . . . O 5 73.251 -94.626 95.469 1 58.55 ? N9A COA 801 L 1 HETATM 11 C C1B COA . . . O 5 74.055 -95.876 95.477 1 54.11 ? C1B COA 801 L 1 HETATM 12 C C2B COA . . . O 5 74.262 -96.56 96.835 1 46.56 ? C2B COA 801 L 1 HETATM 13 O O2B COA . . . O 5 74.966 -95.737 97.7 1 57.57 ? O2B COA 801 L 1 HETATM 14 C C3B COA . . . O 5 75.091 -97.769 96.189 1 41.12 ? C3B COA 801 L 1 HETATM 15 O O3B COA . . . O 5 76.247 -97.22 95.763 1 45.4 ? O3B COA 801 L 1 HETATM 16 P P3B COA . . . O 5 77.729 -97.104 96.842 1 51.63 ? P3B COA 801 L 1 HETATM 17 O O7A COA . . . O 5 78.28 -95.858 96.184 1 40.6 ? O7A COA 801 L 1 HETATM 18 O O8A COA . . . O 5 78.453 -98.395 96.513 1 68.16 ? O8A COA 801 L 1 HETATM 19 O O9A COA . . . O 5 77.107 -97.048 98.214 1 40.41 ? O9A COA 801 L 1 HETATM 20 C C4B COA . . . O 5 74.186 -98.056 94.906 1 32.34 ? C4B COA 801 L 1 HETATM 21 O O4B COA . . . O 5 73.447 -96.846 94.691 1 36.02 ? O4B COA 801 L 1 HETATM 22 C C5B COA . . . O 5 73.257 -99.284 95.009 1 49.82 ? C5B COA 801 L 1 HETATM 23 O O5B COA . . . O 5 72.49 -99.127 96.131 1 37.14 ? O5B COA 801 L 1 HETATM 24 P P1A COA . . . O 5 72.468 -100.077 97.48 1 46.22 ? P1A COA 801 L 1 HETATM 25 O O1A COA . . . O 5 71.095 -100.607 97.718 1 51.49 ? O1A COA 801 L 1 HETATM 26 O O2A COA . . . O 5 73.403 -99.499 98.501 1 43.28 ? O2A COA 801 L 1 HETATM 27 O O3A COA . . . O 5 73.12 -101.405 96.852 1 26.5 ? O3A COA 801 L 1 HETATM 28 P P2A COA . . . O 5 72.594 -102.589 95.97 1 47.24 ? P2A COA 801 L 1 HETATM 29 O O4A COA . . . O 5 73.659 -103.162 95.085 1 57.83 ? O4A COA 801 L 1 HETATM 30 O O5A COA . . . O 5 71.147 -102.622 95.61 1 36.67 ? O5A COA 801 L 1 HETATM 31 O O6A COA . . . O 5 72.587 -103.761 97.315 1 32.08 ? O6A COA 801 L 1 HETATM 32 C CBP COA . . . O 5 72.543 -104.166 99.645 1 25.9 ? CBP COA 801 L 1 HETATM 33 C CCP COA . . . O 5 71.76 -103.662 98.377 1 38.4 ? CCP COA 801 L 1 HETATM 34 C CDP COA . . . O 5 71.588 -104.551 100.766 1 36.12 ? CDP COA 801 L 1 HETATM 35 C CEP COA . . . O 5 73.429 -103.02 100.067 1 35.79 ? CEP COA 801 L 1 HETATM 36 C CAP COA . . . O 5 73.325 -105.457 99.325 1 44.14 ? CAP COA 801 L 1 HETATM 37 O OAP COA . . . O 5 74.423 -105.53 100.194 1 67.25 ? OAP COA 801 L 1 HETATM 38 C C9P COA . . . O 5 72.412 -106.676 99.261 1 48.39 ? C9P COA 801 L 1 HETATM 39 O O9P COA . . . O 5 71.496 -106.826 98.473 1 56.24 ? O9P COA 801 L 1 HETATM 40 N N8P COA . . . O 5 72.711 -107.668 100.224 1 52.61 ? N8P COA 801 L 1 HETATM 41 C C7P COA . . . O 5 72 -108.926 100.387 1 55.83 ? C7P COA 801 L 1 HETATM 42 C C6P COA . . . O 5 72.076 -109.701 99.057 1 56.04 ? C6P COA 801 L 1 HETATM 43 C C5P COA . . . O 5 71.509 -111.092 99.232 1 55.49 ? C5P COA 801 L 1 HETATM 44 O O5P COA . . . O 5 71.146 -111.841 98.34 1 55.86 ? O5P COA 801 L 1 HETATM 45 N N4P COA . . . O 5 71.425 -111.484 100.572 1 53.14 ? N4P COA 801 L 1 HETATM 46 C C3P COA . . . O 5 70.91 -112.783 100.955 1 50.88 ? C3P COA 801 L 1 HETATM 47 C C2P COA . . . O 5 71.905 -113.443 101.904 1 57.12 ? C2P COA 801 L 1 HETATM 48 S S1P COA . . . O 5 73.518 -112.889 101.278 1 62.75 ? S1P COA 801 L 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #