data_8GK2 # _model_server_result.job_id Rfj4ttk6TQldYsaRJAnEWQ _model_server_result.datetime_utc '2025-01-11 03:38:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8GK2 # _exptl.entry_id 8GK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 107.868 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SILVER ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GK2 _cell.length_a 8.449 _cell.length_b 16.716 _cell.length_c 55.087 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C6 NIO 1 A NIO 1 1_555 A N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 A C LEU 2 A LEU 2 1_555 A N AIB 3 A AIB 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C AIB 3 A AIB 3 1_555 A N ALA 4 A ALA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CYS 8 A CYS 8 1_555 A N AIB 9 A AIB 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C AIB 9 A AIB 9 1_555 A N LEU 10 A LEU 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 A C LEU 10 A LEU 10 1_555 A N15 I77 11 A I77 11 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.428 ? covale ? covale7 A C LEU 10 A LEU 10 1_555 A N15 I77 11 A I77 11 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.425 ? metalc ? metalc1 A N NIO 1 A NIO 1 1_555 C AG AG . A AG 202 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 A O CYS 8 A CYS 8 1_555 C AG AG . A AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc3 A SG CYS 8 A CYS 8 1_555 C AG AG . A AG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 A SG CYS 8 A CYS 8 1_555 D AG AG . A AG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc5 A SG CYS 8 A CYS 8 1_555 E AG AG . A AG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc6 A N07 I77 11 A I77 11 1_555 F AG AG . A AG 205 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.551 ? metalc ? metalc7 A N07 I77 11 A I77 11 1_555 F AG AG . A AG 205 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.31 ? metalc ? metalc8 A N10 I77 11 A I77 11 1_555 F AG AG . A AG 205 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.397 ? metalc ? metalc9 A N10 I77 11 A I77 11 1_555 F AG AG . A AG 205 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.31 ? metalc ? metalc10 B O3 NO3 . A NO3 201 1_555 F AG AG . A AG 205 1_445 ? ? ? ? A ? ? ? ? ? ? ? 2.51 ? metalc ? metalc11 C AG AG . A AG 202 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc12 F AG AG . A AG 205 1_555 G O HOH . A HOH 302 1_665 ? B ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc13 F AG AG . A AG 205 1_555 G O HOH . A HOH 304 1_665 ? B ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc14 F AG AG . A AG 205 1_555 G O HOH . A HOH 308 2_475 ? A ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'Ag 1' _chem_comp.formula_weight 107.868 _chem_comp.id AG _chem_comp.mon_nstd_flag . _chem_comp.name 'SILVER ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GK2 _atom_sites.fract_transf_matrix[1][1] 0.118357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.059823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 201 113 NO3 NO3 . C 3 AG A 1 202 1 AG AG . D 3 AG A 1 203 2 AG AG . E 3 AG A 1 204 3 AG AG . F 3 AG A 1 205 4 AG AG . G 4 HOH A 1 301 3 HOH HOH . G 4 HOH A 2 302 2 HOH HOH . G 4 HOH A 3 303 1 HOH HOH . G 4 HOH A 4 304 4 HOH HOH . G 4 HOH A 5 305 5 HOH HOH . G 4 HOH A 6 306 6 HOH HOH . G 4 HOH A 7 307 8 HOH HOH . G 4 HOH A 8 308 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol AG _atom_site.label_atom_id AG _atom_site.label_comp_id AG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.602 _atom_site.Cartn_y 10.676 _atom_site.Cartn_z 2.913 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id AG _atom_site.auth_comp_id AG _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #