data_8GK3 # _model_server_result.job_id 5ISgyKICbeCsIBJVwthLGA _model_server_result.datetime_utc '2024-11-18 15:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":605}' # _entry.id 8GK3 # _exptl.entry_id 8GK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '17-oxoandrost-5-en-3beta-yl hydrogen sulfate' _entity.pdbx_number_of_molecules 24 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.165 _cell.angle_gamma 90 _cell.entry_id 8GK3 _cell.length_a 114.516 _cell.length_b 219.381 _cell.length_c 130.447 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 ? monomeric 1 author_defined_assembly 10 ? monomeric 1 author_defined_assembly 11 ? monomeric 1 author_defined_assembly 12 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,M,N,O,WA 1 1 B,P,Q,R,XA 2 1 C,S,T,U,V,W 3 1 D,X,Y,Z,AA,BA,CA 4 1 E,DA,EA,FA,GA,HA,YA 5 1 F,IA,ZA 6 1 G,JA,AB 7 1 H,KA,LA,MA,NA,BB 8 1 I,OA,PA,QA,CB 9 1 J,RA,SA,TA,DB 10 1 K,UA,EB 11 1 L,VA 12 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 LA N N ? 3 MA N N ? 3 NA N N ? 3 PA N N ? 3 QA N N ? 3 SA N N ? 3 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 M FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc2 B SG CYS 421 B CYS 442 1_555 P FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc3 C SG CYS 421 C CYS 442 1_555 S FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc4 D SG CYS 421 D CYS 442 1_555 X FE HEM . D HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc5 E SG CYS 421 E CYS 442 1_555 DA FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc6 H SG CYS 421 H CYS 442 1_555 KA FE HEM . H HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc7 I SG CYS 421 I CYS 442 1_555 OA FE HEM . I HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? metalc ? metalc8 K SG CYS 421 K CYS 442 1_555 UA FE HEM . K HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? # _chem_comp.formula 'C19 H28 O5 S' _chem_comp.formula_weight 368.488 _chem_comp.id ZWY _chem_comp.mon_nstd_flag . _chem_comp.name '17-oxoandrost-5-en-3beta-yl hydrogen sulfate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Dehydroepiandrosterone sulfate;DHEA sulfate;DHEA-S' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 S21 ZWY doub 458 n n C25 C15 ZWY sing 459 n n C17 C16 ZWY sing 460 n n C17 C18 ZWY sing 461 n n S21 O22 ZWY doub 462 n n S21 O20 ZWY sing 463 n n S21 O24 ZWY sing 464 n n C16 C15 ZWY sing 465 n n C04 C03 ZWY sing 466 n n C04 C05 ZWY sing 467 n n C01 C02 ZWY sing 468 n n O20 C18 ZWY sing 469 n n C15 C05 ZWY sing 470 n n C15 C14 ZWY sing 471 n n C03 C02 ZWY sing 472 n n C18 C19 ZWY sing 473 n n C05 C06 ZWY sing 474 n n C19 C14 ZWY sing 475 n n C02 C10 ZWY sing 476 n n C02 C07 ZWY sing 477 n n C14 C13 ZWY doub 478 n n C06 C07 ZWY sing 479 n n C06 C12 ZWY sing 480 n n O11 C10 ZWY doub 481 n n C10 C09 ZWY sing 482 n n C07 C08 ZWY sing 483 n n C13 C12 ZWY sing 484 n n C08 C09 ZWY sing 485 n n C01 H1 ZWY sing 486 n n C01 H2 ZWY sing 487 n n C01 H3 ZWY sing 488 n n C03 H4 ZWY sing 489 n n C03 H5 ZWY sing 490 n n C04 H6 ZWY sing 491 n n C04 H7 ZWY sing 492 n n C05 H8 ZWY sing 493 n n C06 H9 ZWY sing 494 n n C07 H10 ZWY sing 495 n n C08 H11 ZWY sing 496 n n C08 H12 ZWY sing 497 n n C09 H13 ZWY sing 498 n n C09 H14 ZWY sing 499 n n C12 H15 ZWY sing 500 n n C12 H16 ZWY sing 501 n n C13 H17 ZWY sing 502 n n C16 H18 ZWY sing 503 n n C16 H19 ZWY sing 504 n n C17 H20 ZWY sing 505 n n C17 H21 ZWY sing 506 n n C18 H22 ZWY sing 507 n n C19 H23 ZWY sing 508 n n C19 H24 ZWY sing 509 n n C25 H25 ZWY sing 510 n n C25 H26 ZWY sing 511 n n C25 H27 ZWY sing 512 n n O24 H28 ZWY sing 513 n n # _atom_sites.entry_id 8GK3 _atom_sites.fract_transf_matrix[1][1] 0.008732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001882 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 HEM A 1 601 601 HEM HEM . N 3 ZWY A 1 602 703 ZWY LIG . O 3 ZWY A 1 603 702 ZWY LIG . P 2 HEM B 1 601 601 HEM HEM . Q 3 ZWY B 1 602 702 ZWY LIG . R 3 ZWY B 1 603 703 ZWY LIG . S 2 HEM C 1 601 601 HEM HEM . T 3 ZWY C 1 602 701 ZWY LIG . U 3 ZWY C 1 603 702 ZWY LIG . V 3 ZWY C 1 604 703 ZWY LIG . W 3 ZWY C 1 605 704 ZWY LIG . X 2 HEM D 1 601 601 HEM HEM . Y 3 ZWY D 1 602 701 ZWY LIG . Z 3 ZWY D 1 603 702 ZWY LIG . AA 3 ZWY D 1 604 703 ZWY LIG . BA 3 ZWY D 1 605 704 ZWY LIG . CA 3 ZWY D 1 606 703 ZWY LIG . DA 2 HEM E 1 601 601 HEM HEM . EA 3 ZWY E 1 602 701 ZWY LIG . FA 3 ZWY E 1 603 702 ZWY LIG . GA 3 ZWY E 1 604 703 ZWY LIG . HA 3 ZWY E 1 605 704 ZWY LIG . IA 2 HEM F 1 601 601 HEM HEM . JA 2 HEM G 1 601 601 HEM HEM . KA 2 HEM H 1 601 601 HEM HEM . LA 3 ZWY H 1 602 701 ZWY LIG . MA 3 ZWY H 1 603 702 ZWY LIG . NA 3 ZWY H 1 604 704 ZWY LIG . OA 2 HEM I 1 601 601 HEM HEM . PA 3 ZWY I 1 602 701 ZWY LIG . QA 3 ZWY I 1 603 704 ZWY LIG . RA 2 HEM J 1 601 601 HEM HEM . SA 3 ZWY J 1 602 701 ZWY LIG . TA 3 ZWY J 1 603 704 ZWY LIG . UA 2 HEM K 1 601 601 HEM HEM . VA 2 HEM L 1 601 601 HEM HEM . WA 4 HOH A 1 701 7 HOH HOH . WA 4 HOH A 2 702 35 HOH HOH . WA 4 HOH A 3 703 36 HOH HOH . WA 4 HOH A 4 704 21 HOH HOH . WA 4 HOH A 5 705 22 HOH HOH . XA 4 HOH B 1 701 16 HOH HOH . XA 4 HOH B 2 702 13 HOH HOH . XA 4 HOH B 3 703 2 HOH HOH . XA 4 HOH B 4 704 24 HOH HOH . XA 4 HOH B 5 705 38 HOH HOH . XA 4 HOH B 6 706 37 HOH HOH . XA 4 HOH B 7 707 23 HOH HOH . YA 4 HOH E 1 701 5 HOH HOH . YA 4 HOH E 2 702 3 HOH HOH . ZA 4 HOH F 1 701 39 HOH HOH . ZA 4 HOH F 2 702 27 HOH HOH . ZA 4 HOH F 3 703 25 HOH HOH . ZA 4 HOH F 4 704 26 HOH HOH . AB 4 HOH G 1 701 31 HOH HOH . AB 4 HOH G 2 702 40 HOH HOH . AB 4 HOH G 3 703 30 HOH HOH . AB 4 HOH G 4 704 29 HOH HOH . AB 4 HOH G 5 705 28 HOH HOH . BB 4 HOH H 1 701 9 HOH HOH . BB 4 HOH H 2 702 11 HOH HOH . CB 4 HOH I 1 701 10 HOH HOH . DB 4 HOH J 1 701 12 HOH HOH . EB 4 HOH K 1 701 17 HOH HOH . EB 4 HOH K 2 702 41 HOH HOH . EB 4 HOH K 3 703 33 HOH HOH . EB 4 HOH K 4 704 42 HOH HOH . EB 4 HOH K 5 705 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 ZWY . . . W 3 33.988 50.667 32.643 0.8 37.58 ? C01 ZWY 605 C 1 HETATM 2 C C02 ZWY . . . W 3 34.428 52.065 33.039 0.86 36.33 ? C02 ZWY 605 C 1 HETATM 3 C C03 ZWY . . . W 3 33.6 53.084 32.306 0.75 39.4 ? C03 ZWY 605 C 1 HETATM 4 C C04 ZWY . . . W 3 33.847 52.871 30.81 0.79 37.03 ? C04 ZWY 605 C 1 HETATM 5 C C05 ZWY . . . W 3 35.332 53.036 30.5 0.75 38.07 ? C05 ZWY 605 C 1 HETATM 6 C C06 ZWY . . . W 3 36.128 51.985 31.261 0.89 34.23 ? C06 ZWY 605 C 1 HETATM 7 C C07 ZWY . . . W 3 35.904 52.334 32.705 0.81 35.87 ? C07 ZWY 605 C 1 HETATM 8 C C08 ZWY . . . W 3 36.57 51.399 33.723 0.89 35.01 ? C08 ZWY 605 C 1 HETATM 9 C C09 ZWY . . . W 3 35.816 51.893 34.989 0.88 41.27 ? C09 ZWY 605 C 1 HETATM 10 C C10 ZWY . . . W 3 34.395 52.143 34.516 0.84 40.96 ? C10 ZWY 605 C 1 HETATM 11 C C12 ZWY . . . W 3 37.571 52.021 30.961 0.8 39.35 ? C12 ZWY 605 C 1 HETATM 12 C C13 ZWY . . . W 3 37.721 52.358 29.503 0.86 35.77 ? C13 ZWY 605 C 1 HETATM 13 C C14 ZWY . . . W 3 36.883 52.766 28.633 0.68 38.82 ? C14 ZWY 605 C 1 HETATM 14 C C15 ZWY . . . W 3 35.504 53.043 29.018 0.68 39.07 ? C15 ZWY 605 C 1 HETATM 15 C C16 ZWY . . . W 3 34.959 54.26 28.387 0.75 36.66 ? C16 ZWY 605 C 1 HETATM 16 C C17 ZWY . . . W 3 35.227 54.201 26.889 0.89 33.24 ? C17 ZWY 605 C 1 HETATM 17 C C18 ZWY . . . W 3 36.729 54.291 26.652 0.68 46.45 ? C18 ZWY 605 C 1 HETATM 18 C C19 ZWY . . . W 3 37.412 53.003 27.208 0.8 42.24 ? C19 ZWY 605 C 1 HETATM 19 C C25 ZWY . . . W 3 35.251 51.735 28.532 0.83 35.7 ? C25 ZWY 605 C 1 HETATM 20 O O11 ZWY . . . W 3 33.424 52.352 35.192 0.86 36.55 ? O11 ZWY 605 C 1 HETATM 21 O O20 ZWY . . . W 3 36.875 54.25 25.239 0.81 55.2 ? O20 ZWY 605 C 1 HETATM 22 O O22 ZWY . . . W 3 38.374 54.751 23.531 0.8 61.21 ? O22 ZWY 605 C 1 HETATM 23 O O23 ZWY . . . W 3 37.185 56.565 24.841 0.86 52.47 ? O23 ZWY 605 C 1 HETATM 24 O O24 ZWY . . . W 3 39.044 55.32 25.713 0.82 53.37 -1 O24 ZWY 605 C 1 HETATM 25 S S21 ZWY . . . W 3 37.846 55.304 24.752 0.87 83.46 ? S21 ZWY 605 C 1 HETATM 26 H H1 ZWY . . . W 3 33.66 50.129 33.523 1 45.11 ? H1 ZWY 605 C 1 HETATM 27 H H2 ZWY . . . W 3 33.172 50.732 31.934 1 45.11 ? H2 ZWY 605 C 1 HETATM 28 H H3 ZWY . . . W 3 34.82 50.142 32.188 0.98 45.11 ? H3 ZWY 605 C 1 HETATM 29 H H4 ZWY . . . W 3 33.908 54.083 32.591 1 47.29 ? H4 ZWY 605 C 1 HETATM 30 H H5 ZWY . . . W 3 32.551 52.938 32.531 1 47.29 ? H5 ZWY 605 C 1 HETATM 31 H H6 ZWY . . . W 3 33.278 53.598 30.244 1 44.44 ? H6 ZWY 605 C 1 HETATM 32 H H7 ZWY . . . W 3 33.531 51.873 30.532 1 44.44 ? H7 ZWY 605 C 1 HETATM 33 H H8 ZWY . . . W 3 35.729 53.991 30.822 1 45.69 ? H8 ZWY 605 C 1 HETATM 34 H H9 ZWY . . . W 3 35.784 50.997 30.982 1 41.08 ? H9 ZWY 605 C 1 HETATM 35 H H10 ZWY . . . W 3 36.163 53.371 32.879 1 43.04 ? H10 ZWY 605 C 1 HETATM 36 H H11 ZWY . . . W 3 37.636 51.577 33.796 1 42.01 ? H11 ZWY 605 C 1 HETATM 37 H H12 ZWY . . . W 3 36.36 50.358 33.511 1 42.01 ? H12 ZWY 605 C 1 HETATM 38 H H13 ZWY . . . W 3 36.258 52.81 35.358 1 49.53 ? H13 ZWY 605 C 1 HETATM 39 H H14 ZWY . . . W 3 35.829 51.131 35.758 1 49.53 ? H14 ZWY 605 C 1 HETATM 40 H H15 ZWY . . . W 3 37.934 51.008 31.081 0.99 47.23 ? H15 ZWY 605 C 1 HETATM 41 H H16 ZWY . . . W 3 37.979 52.859 31.513 1 47.23 ? H16 ZWY 605 C 1 HETATM 42 H H17 ZWY . . . W 3 37.643 51.285 29.375 0.98 42.93 ? H17 ZWY 605 C 1 HETATM 43 H H18 ZWY . . . W 3 33.892 54.312 28.562 0.98 44 ? H18 ZWY 605 C 1 HETATM 44 H H19 ZWY . . . W 3 35.442 55.134 28.807 0.99 44 ? H19 ZWY 605 C 1 HETATM 45 H H20 ZWY . . . W 3 34.733 55.031 26.399 0.98 39.9 ? H20 ZWY 605 C 1 HETATM 46 H H21 ZWY . . . W 3 34.853 53.266 26.49 1 39.9 ? H21 ZWY 605 C 1 HETATM 47 H H22 ZWY . . . W 3 37.157 55.168 27.12 1 55.75 ? H22 ZWY 605 C 1 HETATM 48 H H23 ZWY . . . W 3 37.162 52.157 26.58 0.98 50.7 ? H23 ZWY 605 C 1 HETATM 49 H H24 ZWY . . . W 3 38.486 53.141 27.234 1 50.7 ? H24 ZWY 605 C 1 HETATM 50 H H25 ZWY . . . W 3 35.89 51.028 29.048 0.99 42.85 ? H25 ZWY 605 C 1 HETATM 51 H H26 ZWY . . . W 3 35.456 51.699 27.47 1 42.85 ? H26 ZWY 605 C 1 HETATM 52 H H27 ZWY . . . W 3 34.214 51.479 28.709 1 42.85 ? H27 ZWY 605 C 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 192 _model_server_stats.create_model_time_ms 307 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #