data_8GKC
#
_model_server_result.job_id            -ZGbJZdrGKONxU1Jq8ygrQ 
_model_server_result.datetime_utc      '2024-11-15 06:00:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2601}' 
#
_entry.id    8GKC 
#
_exptl.entry_id    8GKC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              439.552 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            denifanstat 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GKC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C27 H29 N5 O' 
_chem_comp.formula_weight    439.552 
_chem_comp.id                X5O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              denifanstat 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-{1-[(5M)-4-cyclobutyl-2-methyl-5-(5-methyl-4H-1,2,4-triazol-3-yl)benzene-1-carbonyl]piperidin-4-yl}benzonitrile 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C29 C27 X5O sing 456 n n 
N26 C27 X5O doub 457 n y 
N26 N25 X5O sing 458 n y 
C27 N28 X5O sing 459 n y 
N25 C24 X5O doub 460 n y 
C33 C32 X5O sing 461 n n 
C33 C30 X5O sing 462 n n 
N28 C24 X5O sing 463 n y 
C24 C05 X5O sing 464 n n 
C32 C31 X5O sing 465 n n 
N23 C22 X5O trip 466 n n 
C22 C19 X5O sing 467 n n 
C30 C31 X5O sing 468 n n 
C30 C04 X5O sing 469 n n 
C19 C20 X5O doub 470 n y 
C19 C18 X5O sing 471 n y 
C20 C21 X5O sing 472 n y 
C05 C04 X5O doub 473 n y 
C05 C06 X5O sing 474 n y 
C18 C17 X5O doub 475 n y 
C21 C16 X5O doub 476 n y 
C17 C16 X5O sing 477 n y 
C16 C13 X5O sing 478 n n 
C04 C03 X5O sing 479 n y 
C14 C13 X5O sing 480 n n 
C14 C15 X5O sing 481 n n 
C06 C07 X5O doub 482 n y 
C13 C12 X5O sing 483 n n 
C15 N10 X5O sing 484 n n 
C03 C02 X5O doub 485 n y 
C07 C02 X5O sing 486 n y 
C07 C08 X5O sing 487 n n 
C12 C11 X5O sing 488 n n 
N10 C08 X5O sing 489 n n 
N10 C11 X5O sing 490 n n 
C02 C01 X5O sing 491 n n 
C08 O09 X5O doub 492 n n 
C13 H1 X5O sing 493 n n 
C15 H2 X5O sing 494 n n 
C15 H3 X5O sing 495 n n 
C17 H4 X5O sing 496 n n 
C20 H5 X5O sing 497 n n 
C21 H6 X5O sing 498 n n 
C01 H7 X5O sing 499 n n 
C01 H8 X5O sing 500 n n 
C01 H9 X5O sing 501 n n 
C03 H10 X5O sing 502 n n 
C06 H11 X5O sing 503 n n 
C11 H12 X5O sing 504 n n 
C11 H13 X5O sing 505 n n 
C12 H14 X5O sing 506 n n 
C12 H15 X5O sing 507 n n 
C14 H16 X5O sing 508 n n 
C14 H17 X5O sing 509 n n 
C18 H18 X5O sing 510 n n 
C29 H19 X5O sing 511 n n 
C29 H20 X5O sing 512 n n 
C29 H21 X5O sing 513 n n 
C30 H22 X5O sing 514 n n 
C31 H23 X5O sing 515 n n 
C31 H24 X5O sing 516 n n 
C32 H25 X5O sing 517 n n 
C32 H26 X5O sing 518 n n 
C33 H27 X5O sing 519 n n 
C33 H28 X5O sing 520 n n 
N28 H29 X5O sing 521 n n 
#
_atom_sites.entry_id                     8GKC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X5O A 1 2601 2601 X5O X5O . 
D 3 NDP A 1 2602 3001 NDP NAP . 
E 3 NDP A 1 2603 3002 NDP NAP . 
F 2 X5O D 1 2601 2601 X5O X5O . 
G 3 NDP D 1 2602 3001 NDP NAP . 
H 3 NDP D 1 2603 3002 NDP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 X5O . . . C 2 103.341 178.55 133.132 1 30.51 ? C13 X5O 2601 A 1 
HETATM 2 C C15 X5O . . . C 2 105.651 178.08 132.407 1 30.51 ? C15 X5O 2601 A 1 
HETATM 3 C C17 X5O . . . C 2 101.07 179.609 133.718 1 30.51 ? C17 X5O 2601 A 1 
HETATM 4 C C20 X5O . . . C 2 99.945 177.104 134.206 1 30.51 ? C20 X5O 2601 A 1 
HETATM 5 C C21 X5O . . . C 2 101.282 177.2 133.812 1 30.51 ? C21 X5O 2601 A 1 
HETATM 6 C C22 X5O . . . C 2 97.707 178.123 134.792 1 30.51 ? C22 X5O 2601 A 1 
HETATM 7 C C24 X5O . . . C 2 108.222 182.116 134.783 1 30.51 ? C24 X5O 2601 A 1 
HETATM 8 C C01 X5O . . . C 2 108.554 179.884 129.341 1 30.51 ? C01 X5O 2601 A 1 
HETATM 9 C C02 X5O . . . C 2 108.477 180.471 130.767 1 30.51 ? C02 X5O 2601 A 1 
HETATM 10 C C03 X5O . . . C 2 109.642 180.9 131.423 1 30.51 ? C03 X5O 2601 A 1 
HETATM 11 C C04 X5O . . . C 2 109.564 181.431 132.72 1 30.51 ? C04 X5O 2601 A 1 
HETATM 12 C C05 X5O . . . C 2 108.323 181.533 133.358 1 30.51 ? C05 X5O 2601 A 1 
HETATM 13 C C06 X5O . . . C 2 107.162 181.106 132.703 1 30.51 ? C06 X5O 2601 A 1 
HETATM 14 C C07 X5O . . . C 2 107.233 180.572 131.413 1 30.51 ? C07 X5O 2601 A 1 
HETATM 15 C C08 X5O . . . C 2 105.893 180.114 130.728 1 30.51 ? C08 X5O 2601 A 1 
HETATM 16 C C11 X5O . . . C 2 103.854 178.396 130.694 1 30.51 ? C11 X5O 2601 A 1 
HETATM 17 C C12 X5O . . . C 2 102.764 178.307 131.785 1 30.51 ? C12 X5O 2601 A 1 
HETATM 18 C C14 X5O . . . C 2 104.52 177.676 133.354 1 30.51 ? C14 X5O 2601 A 1 
HETATM 19 C C16 X5O . . . C 2 101.841 178.451 133.559 1 30.51 ? C16 X5O 2601 A 1 
HETATM 20 C C18 X5O . . . C 2 99.733 179.511 134.114 1 30.51 ? C18 X5O 2601 A 1 
HETATM 21 C C19 X5O . . . C 2 99.171 178.256 134.359 1 30.51 ? C19 X5O 2601 A 1 
HETATM 22 C C27 X5O . . . C 2 108.161 183.51 136.448 1 30.51 ? C27 X5O 2601 A 1 
HETATM 23 C C29 X5O . . . C 2 108.184 184.808 137.278 1 30.51 ? C29 X5O 2601 A 1 
HETATM 24 C C30 X5O . . . C 2 110.836 181.906 133.476 1 30.51 ? C30 X5O 2601 A 1 
HETATM 25 C C31 X5O . . . C 2 111.677 182.997 132.805 1 30.51 ? C31 X5O 2601 A 1 
HETATM 26 C C32 X5O . . . C 2 112.92 182.111 132.923 1 30.51 ? C32 X5O 2601 A 1 
HETATM 27 C C33 X5O . . . C 2 112.083 181.016 133.588 1 30.51 ? C33 X5O 2601 A 1 
HETATM 28 N N10 X5O . . . C 2 105.164 178.913 131.247 1 30.51 ? N10 X5O 2601 A 1 
HETATM 29 N N23 X5O . . . C 2 96.624 178.013 135.114 1 30.51 ? N23 X5O 2601 A 1 
HETATM 30 N N25 X5O . . . C 2 108.044 181.419 135.897 1 30.51 ? N25 X5O 2601 A 1 
HETATM 31 N N26 X5O . . . C 2 108.008 182.291 136.923 1 30.51 ? N26 X5O 2601 A 1 
HETATM 32 N N28 X5O . . . C 2 108.295 183.421 135.113 1 30.51 ? N28 X5O 2601 A 1 
HETATM 33 O O09 X5O . . . C 2 105.448 180.731 129.82 1 30.51 ? O09 X5O 2601 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           448 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#