data_8GKC
#
_model_server_result.job_id            0i8V9x_kGbirscl9YIEN1A 
_model_server_result.datetime_utc      '2024-11-15 06:05:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2602}' 
#
_entry.id    8GKC 
#
_exptl.entry_id    8GKC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GKC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 235 n n 
PA O2A NDP sing 236 n n 
PA O5B NDP sing 237 n n 
PA O3 NDP sing 238 n n 
O2A HOA2 NDP sing 239 n n 
O5B C5B NDP sing 240 n n 
C5B C4B NDP sing 241 n n 
C5B H51A NDP sing 242 n n 
C5B H52A NDP sing 243 n n 
C4B O4B NDP sing 244 n n 
C4B C3B NDP sing 245 n n 
C4B H4B NDP sing 246 n n 
O4B C1B NDP sing 247 n n 
C3B O3B NDP sing 248 n n 
C3B C2B NDP sing 249 n n 
C3B H3B NDP sing 250 n n 
O3B HO3A NDP sing 251 n n 
C2B O2B NDP sing 252 n n 
C2B C1B NDP sing 253 n n 
C2B H2B NDP sing 254 n n 
O2B P2B NDP sing 255 n n 
C1B N9A NDP sing 256 n n 
C1B H1B NDP sing 257 n n 
N9A C8A NDP sing 258 n y 
N9A C4A NDP sing 259 n y 
C8A N7A NDP doub 260 n y 
C8A H8A NDP sing 261 n n 
N7A C5A NDP sing 262 n y 
C5A C6A NDP sing 263 n y 
C5A C4A NDP doub 264 n y 
C6A N6A NDP sing 265 n n 
C6A N1A NDP doub 266 n y 
N6A H61A NDP sing 267 n n 
N6A H62A NDP sing 268 n n 
N1A C2A NDP sing 269 n y 
C2A N3A NDP doub 270 n y 
C2A H2A NDP sing 271 n n 
N3A C4A NDP sing 272 n y 
O3 PN NDP sing 273 n n 
PN O1N NDP doub 274 n n 
PN O2N NDP sing 275 n n 
PN O5D NDP sing 276 n n 
O2N H21N NDP sing 277 n n 
O5D C5D NDP sing 278 n n 
C5D C4D NDP sing 279 n n 
C5D H51N NDP sing 280 n n 
C5D H52N NDP sing 281 n n 
C4D O4D NDP sing 282 n n 
C4D C3D NDP sing 283 n n 
C4D H4D NDP sing 284 n n 
O4D C1D NDP sing 285 n n 
C3D O3D NDP sing 286 n n 
C3D C2D NDP sing 287 n n 
C3D H3D NDP sing 288 n n 
O3D HO3N NDP sing 289 n n 
C2D O2D NDP sing 290 n n 
C2D C1D NDP sing 291 n n 
C2D H2D NDP sing 292 n n 
O2D HO2N NDP sing 293 n n 
C1D N1N NDP sing 294 n n 
C1D H1D NDP sing 295 n n 
N1N C2N NDP sing 296 n n 
N1N C6N NDP sing 297 n n 
C2N C3N NDP doub 298 n n 
C2N H2N NDP sing 299 n n 
C3N C7N NDP sing 300 n n 
C3N C4N NDP sing 301 n n 
C7N O7N NDP doub 302 n n 
C7N N7N NDP sing 303 n n 
N7N H71N NDP sing 304 n n 
N7N H72N NDP sing 305 n n 
C4N C5N NDP sing 306 n n 
C4N H41N NDP sing 307 n n 
C4N H42N NDP sing 308 n n 
C5N C6N NDP doub 309 n n 
C5N H5N NDP sing 310 n n 
C6N H6N NDP sing 311 n n 
P2B O1X NDP doub 312 n n 
P2B O2X NDP sing 313 n n 
P2B O3X NDP sing 314 n n 
O2X HOP2 NDP sing 315 n n 
O3X HOP3 NDP sing 316 n n 
#
_atom_sites.entry_id                     8GKC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X5O A 1 2601 2601 X5O X5O . 
D 3 NDP A 1 2602 3001 NDP NAP . 
E 3 NDP A 1 2603 3002 NDP NAP . 
F 2 X5O D 1 2601 2601 X5O X5O . 
G 3 NDP D 1 2602 3001 NDP NAP . 
H 3 NDP D 1 2603 3002 NDP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . D 3 104.639 132.122 108.063 1 106.04 ? PA NDP 2602 A 1 
HETATM 2 O O1A NDP . . . D 3 103.865 133.213 108.765 1 117.45 -1 O1A NDP 2602 A 1 
HETATM 3 O O2A NDP . . . D 3 104.093 131.931 106.669 1 127.42 ? O2A NDP 2602 A 1 
HETATM 4 O O5B NDP . . . D 3 104.493 130.718 108.911 1 134.47 ? O5B NDP 2602 A 1 
HETATM 5 C C5B NDP . . . D 3 105.674 130.127 109.359 1 124.35 ? C5B NDP 2602 A 1 
HETATM 6 C C4B NDP . . . D 3 105.354 128.801 110.11 1 140.33 ? C4B NDP 2602 A 1 
HETATM 7 O O4B NDP . . . D 3 105.739 128.909 111.323 1 140.9 ? O4B NDP 2602 A 1 
HETATM 8 C C3B NDP . . . D 3 103.819 128.508 110.225 1 154.57 ? C3B NDP 2602 A 1 
HETATM 9 O O3B NDP . . . D 3 103.346 127.829 109.15 1 123.84 ? O3B NDP 2602 A 1 
HETATM 10 C C2B NDP . . . D 3 103.83 127.583 111.415 1 179.02 ? C2B NDP 2602 A 1 
HETATM 11 O O2B NDP . . . D 3 104.541 126.321 110.978 1 186.44 ? O2B NDP 2602 A 1 
HETATM 12 C C1B NDP . . . D 3 104.586 128.226 112.242 1 169.86 ? C1B NDP 2602 A 1 
HETATM 13 N N9A NDP . . . D 3 103.819 129.209 112.976 1 162.53 ? N9A NDP 2602 A 1 
HETATM 14 C C8A NDP . . . D 3 103.032 128.927 113.998 1 132.85 ? C8A NDP 2602 A 1 
HETATM 15 N N7A NDP . . . D 3 102.478 130.038 114.452 1 120.72 ? N7A NDP 2602 A 1 
HETATM 16 C C5A NDP . . . D 3 102.908 131.071 113.711 1 181.91 ? C5A NDP 2602 A 1 
HETATM 17 C C6A NDP . . . D 3 102.673 132.46 113.713 1 189.18 ? C6A NDP 2602 A 1 
HETATM 18 N N6A NDP . . . D 3 101.781 133.062 114.687 1 134.17 ? N6A NDP 2602 A 1 
HETATM 19 N N1A NDP . . . D 3 103.279 133.219 112.814 1 167.1 ? N1A NDP 2602 A 1 
HETATM 20 C C2A NDP . . . D 3 104.097 132.687 111.921 1 113.31 ? C2A NDP 2602 A 1 
HETATM 21 N N3A NDP . . . D 3 104.334 131.389 111.899 1 107.37 ? N3A NDP 2602 A 1 
HETATM 22 C C4A NDP . . . D 3 103.766 130.542 112.77 1 163.26 ? C4A NDP 2602 A 1 
HETATM 23 O O3 NDP . . . D 3 106.231 132.547 107.985 1 122.02 ? O3 NDP 2602 A 1 
HETATM 24 P PN NDP . . . D 3 107.266 132.062 106.798 1 116.35 ? PN NDP 2602 A 1 
HETATM 25 O O1N NDP . . . D 3 107.142 130.575 106.584 1 139.56 -1 O1N NDP 2602 A 1 
HETATM 26 O O2N NDP . . . D 3 106.961 132.796 105.515 1 100.8 ? O2N NDP 2602 A 1 
HETATM 27 O O5D NDP . . . D 3 108.814 132.368 107.257 1 103.03 ? O5D NDP 2602 A 1 
HETATM 28 C C5D NDP . . . D 3 109.407 131.462 108.143 1 129.23 ? C5D NDP 2602 A 1 
HETATM 29 C C4D NDP . . . D 3 110.232 132.152 108.999 1 100.8 ? C4D NDP 2602 A 1 
HETATM 30 O O4D NDP . . . D 3 111.494 132.63 108.247 1 102.14 ? O4D NDP 2602 A 1 
HETATM 31 C C3D NDP . . . D 3 109.522 133.467 109.546 1 100.8 ? C3D NDP 2602 A 1 
HETATM 32 O O3D NDP . . . D 3 109.512 133.447 111.045 1 124.72 ? O3D NDP 2602 A 1 
HETATM 33 C C2D NDP . . . D 3 110.192 134.437 109.079 1 101.21 ? C2D NDP 2602 A 1 
HETATM 34 O O2D NDP . . . D 3 110.311 135.55 110.013 1 110.93 ? O2D NDP 2602 A 1 
HETATM 35 C C1D NDP . . . D 3 111.702 133.823 108.681 1 100.8 ? C1D NDP 2602 A 1 
HETATM 36 N N1N NDP . . . D 3 112.283 134.605 107.651 1 122.28 ? N1N NDP 2602 A 1 
HETATM 37 C C2N NDP . . . D 3 113.591 134.743 107.624 1 142.21 ? C2N NDP 2602 A 1 
HETATM 38 C C3N NDP . . . D 3 114.223 135.491 106.65 1 100.8 ? C3N NDP 2602 A 1 
HETATM 39 C C7N NDP . . . D 3 115.743 135.633 106.651 1 100.8 ? C7N NDP 2602 A 1 
HETATM 40 O O7N NDP . . . D 3 116.351 135.565 105.637 1 113.31 ? O7N NDP 2602 A 1 
HETATM 41 N N7N NDP . . . D 3 116.433 135.848 107.91 1 100.8 ? N7N NDP 2602 A 1 
HETATM 42 C C4N NDP . . . D 3 113.436 136.106 105.689 1 100.8 ? C4N NDP 2602 A 1 
HETATM 43 C C5N NDP . . . D 3 112.059 135.942 105.735 1 100.8 ? C5N NDP 2602 A 1 
HETATM 44 C C6N NDP . . . D 3 111.51 135.173 106.748 1 100.8 ? C6N NDP 2602 A 1 
HETATM 45 P P2B NDP . . . D 3 104.42 124.951 111.882 1 138.25 ? P2B NDP 2602 A 1 
HETATM 46 O O1X NDP . . . D 3 104.034 123.808 110.977 1 100.8 ? O1X NDP 2602 A 1 
HETATM 47 O O2X NDP . . . D 3 105.758 124.658 112.513 1 100.8 -1 O2X NDP 2602 A 1 
HETATM 48 O O3X NDP . . . D 3 103.372 125.132 112.956 1 136.64 ? O3X NDP 2602 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           461 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#