data_8GKC # _model_server_result.job_id 3aeh2tDJlP7opPvJ2ow3Dw _model_server_result.datetime_utc '2024-11-15 05:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2603}' # _entry.id 8GKC # _exptl.entry_id 8GKC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GKC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 235 n n PA O2A NDP sing 236 n n PA O5B NDP sing 237 n n PA O3 NDP sing 238 n n O2A HOA2 NDP sing 239 n n O5B C5B NDP sing 240 n n C5B C4B NDP sing 241 n n C5B H51A NDP sing 242 n n C5B H52A NDP sing 243 n n C4B O4B NDP sing 244 n n C4B C3B NDP sing 245 n n C4B H4B NDP sing 246 n n O4B C1B NDP sing 247 n n C3B O3B NDP sing 248 n n C3B C2B NDP sing 249 n n C3B H3B NDP sing 250 n n O3B HO3A NDP sing 251 n n C2B O2B NDP sing 252 n n C2B C1B NDP sing 253 n n C2B H2B NDP sing 254 n n O2B P2B NDP sing 255 n n C1B N9A NDP sing 256 n n C1B H1B NDP sing 257 n n N9A C8A NDP sing 258 n y N9A C4A NDP sing 259 n y C8A N7A NDP doub 260 n y C8A H8A NDP sing 261 n n N7A C5A NDP sing 262 n y C5A C6A NDP sing 263 n y C5A C4A NDP doub 264 n y C6A N6A NDP sing 265 n n C6A N1A NDP doub 266 n y N6A H61A NDP sing 267 n n N6A H62A NDP sing 268 n n N1A C2A NDP sing 269 n y C2A N3A NDP doub 270 n y C2A H2A NDP sing 271 n n N3A C4A NDP sing 272 n y O3 PN NDP sing 273 n n PN O1N NDP doub 274 n n PN O2N NDP sing 275 n n PN O5D NDP sing 276 n n O2N H21N NDP sing 277 n n O5D C5D NDP sing 278 n n C5D C4D NDP sing 279 n n C5D H51N NDP sing 280 n n C5D H52N NDP sing 281 n n C4D O4D NDP sing 282 n n C4D C3D NDP sing 283 n n C4D H4D NDP sing 284 n n O4D C1D NDP sing 285 n n C3D O3D NDP sing 286 n n C3D C2D NDP sing 287 n n C3D H3D NDP sing 288 n n O3D HO3N NDP sing 289 n n C2D O2D NDP sing 290 n n C2D C1D NDP sing 291 n n C2D H2D NDP sing 292 n n O2D HO2N NDP sing 293 n n C1D N1N NDP sing 294 n n C1D H1D NDP sing 295 n n N1N C2N NDP sing 296 n n N1N C6N NDP sing 297 n n C2N C3N NDP doub 298 n n C2N H2N NDP sing 299 n n C3N C7N NDP sing 300 n n C3N C4N NDP sing 301 n n C7N O7N NDP doub 302 n n C7N N7N NDP sing 303 n n N7N H71N NDP sing 304 n n N7N H72N NDP sing 305 n n C4N C5N NDP sing 306 n n C4N H41N NDP sing 307 n n C4N H42N NDP sing 308 n n C5N C6N NDP doub 309 n n C5N H5N NDP sing 310 n n C6N H6N NDP sing 311 n n P2B O1X NDP doub 312 n n P2B O2X NDP sing 313 n n P2B O3X NDP sing 314 n n O2X HOP2 NDP sing 315 n n O3X HOP3 NDP sing 316 n n # _atom_sites.entry_id 8GKC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X5O A 1 2601 2601 X5O X5O . D 3 NDP A 1 2602 3001 NDP NAP . E 3 NDP A 1 2603 3002 NDP NAP . F 2 X5O D 1 2601 2601 X5O X5O . G 3 NDP D 1 2602 3001 NDP NAP . H 3 NDP D 1 2603 3002 NDP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 3 114.03 178.25 123.191 1 137.64 ? PA NDP 2603 A 1 HETATM 2 O O1A NDP . . . E 3 113.662 179.371 124.128 1 118.54 -1 O1A NDP 2603 A 1 HETATM 3 O O2A NDP . . . E 3 115.404 177.737 123.548 1 103 ? O2A NDP 2603 A 1 HETATM 4 O O5B NDP . . . E 3 114.015 178.866 121.662 1 105.51 ? O5B NDP 2603 A 1 HETATM 5 C C5B NDP . . . E 3 113.761 180.236 121.554 1 96.57 ? C5B NDP 2603 A 1 HETATM 6 C C4B NDP . . . E 3 114.378 180.804 120.242 1 123.58 ? C4B NDP 2603 A 1 HETATM 7 O O4B NDP . . . E 3 113.924 181.973 120.016 1 121.76 ? O4B NDP 2603 A 1 HETATM 8 C C3B NDP . . . E 3 115.935 180.984 120.357 1 141.9 ? C3B NDP 2603 A 1 HETATM 9 O O3B NDP . . . E 3 116.544 180.234 119.401 1 126.34 ? O3B NDP 2603 A 1 HETATM 10 C C2B NDP . . . E 3 116.172 182.46 120.086 1 132.69 ? C2B NDP 2603 A 1 HETATM 11 O O2B NDP . . . E 3 117.462 182.695 119.329 1 123.84 ? O2B NDP 2603 A 1 HETATM 12 C C1B NDP . . . E 3 115.172 182.736 119.326 1 136.46 ? C1B NDP 2603 A 1 HETATM 13 N N9A NDP . . . E 3 114.96 184.147 119.176 1 145.91 ? N9A NDP 2603 A 1 HETATM 14 C C8A NDP . . . E 3 114.635 185.015 120.114 1 168.01 ? C8A NDP 2603 A 1 HETATM 15 N N7A NDP . . . E 3 114.532 186.219 119.577 1 161.54 ? N7A NDP 2603 A 1 HETATM 16 C C5A NDP . . . E 3 114.802 186.124 118.264 1 153.8 ? C5A NDP 2603 A 1 HETATM 17 C C6A NDP . . . E 3 114.853 187.026 117.189 1 157.9 ? C6A NDP 2603 A 1 HETATM 18 N N6A NDP . . . E 3 114.573 188.435 117.396 1 194.41 ? N6A NDP 2603 A 1 HETATM 19 N N1A NDP . . . E 3 115.163 186.574 115.982 1 104.24 ? N1A NDP 2603 A 1 HETATM 20 C C2A NDP . . . E 3 115.421 185.29 115.776 1 120.46 ? C2A NDP 2603 A 1 HETATM 21 N N3A NDP . . . E 3 115.378 184.419 116.765 1 128.48 ? N3A NDP 2603 A 1 HETATM 22 C C4A NDP . . . E 3 115.07 184.796 118.013 1 128.61 ? C4A NDP 2603 A 1 HETATM 23 O O3 NDP . . . E 3 112.926 177.039 123.364 1 96.57 ? O3 NDP 2603 A 1 HETATM 24 P PN NDP . . . E 3 111.54 177.285 124.214 1 135.47 ? PN NDP 2603 A 1 HETATM 25 O O1N NDP . . . E 3 111.874 177.787 125.599 1 141.36 -1 O1N NDP 2603 A 1 HETATM 26 O O2N NDP . . . E 3 110.734 176.015 124.329 1 139.13 ? O2N NDP 2603 A 1 HETATM 27 O O5D NDP . . . E 3 110.676 178.428 123.406 1 100.87 ? O5D NDP 2603 A 1 HETATM 28 C C5D NDP . . . E 3 110.469 178.242 122.034 1 104.02 ? C5D NDP 2603 A 1 HETATM 29 C C4D NDP . . . E 3 109.133 178.415 121.768 1 123.47 ? C4D NDP 2603 A 1 HETATM 30 O O4D NDP . . . E 3 108.274 177.552 122.727 1 105.63 ? O4D NDP 2603 A 1 HETATM 31 C C3D NDP . . . E 3 108.72 179.926 122.045 1 155.12 ? C3D NDP 2603 A 1 HETATM 32 O O3D NDP . . . E 3 107.988 180.489 120.866 1 138.89 ? O3D NDP 2603 A 1 HETATM 33 C C2D NDP . . . E 3 108.001 179.887 123.085 1 142.61 ? C2D NDP 2603 A 1 HETATM 34 O O2D NDP . . . E 3 106.942 180.887 123.094 1 167.75 ? O2D NDP 2603 A 1 HETATM 35 C C1D NDP . . . E 3 107.352 178.346 123.154 1 121.07 ? C1D NDP 2603 A 1 HETATM 36 N N1N NDP . . . E 3 107.007 178.083 124.505 1 127.76 ? N1N NDP 2603 A 1 HETATM 37 C C2N NDP . . . E 3 107.893 177.558 125.333 1 141.85 ? C2N NDP 2603 A 1 HETATM 38 C C3N NDP . . . E 3 107.574 177.304 126.659 1 148.3 ? C3N NDP 2603 A 1 HETATM 39 C C7N NDP . . . E 3 108.59 176.691 127.622 1 152.39 ? C7N NDP 2603 A 1 HETATM 40 O O7N NDP . . . E 3 108.219 176.187 128.627 1 146.58 ? O7N NDP 2603 A 1 HETATM 41 N N7N NDP . . . E 3 110.007 176.721 127.305 1 149.21 ? N7N NDP 2603 A 1 HETATM 42 C C4N NDP . . . E 3 106.297 177.621 127.097 1 139.12 ? C4N NDP 2603 A 1 HETATM 43 C C5N NDP . . . E 3 105.393 178.179 126.208 1 96.95 ? C5N NDP 2603 A 1 HETATM 44 C C6N NDP . . . E 3 105.792 178.399 124.903 1 101.63 ? C6N NDP 2603 A 1 HETATM 45 P P2B NDP . . . E 3 118.229 184.141 119.53 1 160.41 ? P2B NDP 2603 A 1 HETATM 46 O O1X NDP . . . E 3 119.725 183.947 119.475 1 137.32 ? O1X NDP 2603 A 1 HETATM 47 O O2X NDP . . . E 3 117.82 185.093 118.438 1 154.36 -1 O2X NDP 2603 A 1 HETATM 48 O O3X NDP . . . E 3 117.832 184.732 120.861 1 124.86 ? O3X NDP 2603 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #