data_8GKC
#
_model_server_result.job_id            r6jqNJAUR74xb6wTgMyX9A 
_model_server_result.datetime_utc      '2024-11-15 05:39:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gkc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2603}' 
#
_entry.id    8GKC 
#
_exptl.entry_id    8GKC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GKC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GKC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 H N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 235 n n 
PA O2A NDP sing 236 n n 
PA O5B NDP sing 237 n n 
PA O3 NDP sing 238 n n 
O2A HOA2 NDP sing 239 n n 
O5B C5B NDP sing 240 n n 
C5B C4B NDP sing 241 n n 
C5B H51A NDP sing 242 n n 
C5B H52A NDP sing 243 n n 
C4B O4B NDP sing 244 n n 
C4B C3B NDP sing 245 n n 
C4B H4B NDP sing 246 n n 
O4B C1B NDP sing 247 n n 
C3B O3B NDP sing 248 n n 
C3B C2B NDP sing 249 n n 
C3B H3B NDP sing 250 n n 
O3B HO3A NDP sing 251 n n 
C2B O2B NDP sing 252 n n 
C2B C1B NDP sing 253 n n 
C2B H2B NDP sing 254 n n 
O2B P2B NDP sing 255 n n 
C1B N9A NDP sing 256 n n 
C1B H1B NDP sing 257 n n 
N9A C8A NDP sing 258 n y 
N9A C4A NDP sing 259 n y 
C8A N7A NDP doub 260 n y 
C8A H8A NDP sing 261 n n 
N7A C5A NDP sing 262 n y 
C5A C6A NDP sing 263 n y 
C5A C4A NDP doub 264 n y 
C6A N6A NDP sing 265 n n 
C6A N1A NDP doub 266 n y 
N6A H61A NDP sing 267 n n 
N6A H62A NDP sing 268 n n 
N1A C2A NDP sing 269 n y 
C2A N3A NDP doub 270 n y 
C2A H2A NDP sing 271 n n 
N3A C4A NDP sing 272 n y 
O3 PN NDP sing 273 n n 
PN O1N NDP doub 274 n n 
PN O2N NDP sing 275 n n 
PN O5D NDP sing 276 n n 
O2N H21N NDP sing 277 n n 
O5D C5D NDP sing 278 n n 
C5D C4D NDP sing 279 n n 
C5D H51N NDP sing 280 n n 
C5D H52N NDP sing 281 n n 
C4D O4D NDP sing 282 n n 
C4D C3D NDP sing 283 n n 
C4D H4D NDP sing 284 n n 
O4D C1D NDP sing 285 n n 
C3D O3D NDP sing 286 n n 
C3D C2D NDP sing 287 n n 
C3D H3D NDP sing 288 n n 
O3D HO3N NDP sing 289 n n 
C2D O2D NDP sing 290 n n 
C2D C1D NDP sing 291 n n 
C2D H2D NDP sing 292 n n 
O2D HO2N NDP sing 293 n n 
C1D N1N NDP sing 294 n n 
C1D H1D NDP sing 295 n n 
N1N C2N NDP sing 296 n n 
N1N C6N NDP sing 297 n n 
C2N C3N NDP doub 298 n n 
C2N H2N NDP sing 299 n n 
C3N C7N NDP sing 300 n n 
C3N C4N NDP sing 301 n n 
C7N O7N NDP doub 302 n n 
C7N N7N NDP sing 303 n n 
N7N H71N NDP sing 304 n n 
N7N H72N NDP sing 305 n n 
C4N C5N NDP sing 306 n n 
C4N H41N NDP sing 307 n n 
C4N H42N NDP sing 308 n n 
C5N C6N NDP doub 309 n n 
C5N H5N NDP sing 310 n n 
C6N H6N NDP sing 311 n n 
P2B O1X NDP doub 312 n n 
P2B O2X NDP sing 313 n n 
P2B O3X NDP sing 314 n n 
O2X HOP2 NDP sing 315 n n 
O3X HOP3 NDP sing 316 n n 
#
_atom_sites.entry_id                     8GKC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X5O A 1 2601 2601 X5O X5O . 
D 3 NDP A 1 2602 3001 NDP NAP . 
E 3 NDP A 1 2603 3002 NDP NAP . 
F 2 X5O D 1 2601 2601 X5O X5O . 
G 3 NDP D 1 2602 3001 NDP NAP . 
H 3 NDP D 1 2603 3002 NDP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . H 3 143.511 79.222 123.168 1 111.67 ? PA NDP 2603 D 1 
HETATM 2 O O1A NDP . . . H 3 143.853 78.097 124.112 1 136.04 -1 O1A NDP 2603 D 1 
HETATM 3 O O2A NDP . . . H 3 142.134 79.741 123.501 1 133.57 ? O2A NDP 2603 D 1 
HETATM 4 O O5B NDP . . . H 3 143.551 78.603 121.641 1 99.35 ? O5B NDP 2603 D 1 
HETATM 5 C C5B NDP . . . H 3 143.794 77.23 121.548 1 105.11 ? C5B NDP 2603 D 1 
HETATM 6 C C4B NDP . . . H 3 143.167 76.647 120.248 1 99.35 ? C4B NDP 2603 D 1 
HETATM 7 O O4B NDP . . . H 3 143.624 75.477 120.03 1 99.35 ? O4B NDP 2603 D 1 
HETATM 8 C C3B NDP . . . H 3 141.613 76.456 120.384 1 99.35 ? C3B NDP 2603 D 1 
HETATM 9 O O3B NDP . . . H 3 140.988 77.219 119.449 1 115.95 ? O3B NDP 2603 D 1 
HETATM 10 C C2B NDP . . . H 3 141.379 74.982 120.094 1 99.35 ? C2B NDP 2603 D 1 
HETATM 11 O O2B NDP . . . H 3 140.089 74.752 119.334 1 99.35 ? O2B NDP 2603 D 1 
HETATM 12 C C1B NDP . . . H 3 142.382 74.71 119.335 1 99.35 ? C1B NDP 2603 D 1 
HETATM 13 N N9A NDP . . . H 3 142.602 73.299 119.187 1 99.35 ? N9A NDP 2603 D 1 
HETATM 14 C C8A NDP . . . H 3 142.873 72.424 120.136 1 130.51 ? C8A NDP 2603 D 1 
HETATM 15 N N7A NDP . . . H 3 143.004 71.223 119.597 1 153.17 ? N7A NDP 2603 D 1 
HETATM 16 C C5A NDP . . . H 3 142.807 71.326 118.273 1 140.88 ? C5A NDP 2603 D 1 
HETATM 17 C C6A NDP . . . H 3 142.815 70.429 117.191 1 144.59 ? C6A NDP 2603 D 1 
HETATM 18 N N6A NDP . . . H 3 143.081 69.02 117.409 1 151.8 ? N6A NDP 2603 D 1 
HETATM 19 N N1A NDP . . . H 3 142.573 70.889 115.972 1 114.48 ? N1A NDP 2603 D 1 
HETATM 20 C C2A NDP . . . H 3 142.329 72.174 115.759 1 122.97 ? C2A NDP 2603 D 1 
HETATM 21 N N3A NDP . . . H 3 142.317 73.04 116.754 1 103.82 ? N3A NDP 2603 D 1 
HETATM 22 C C4A NDP . . . H 3 142.554 72.655 118.016 1 104.12 ? C4A NDP 2603 D 1 
HETATM 23 O O3 NDP . . . H 3 144.623 80.421 123.363 1 130.76 ? O3 NDP 2603 D 1 
HETATM 24 P PN NDP . . . H 3 145.996 80.146 124.226 1 109.21 ? PN NDP 2603 D 1 
HETATM 25 O O1N NDP . . . H 3 145.633 79.678 125.615 1 99.35 -1 O1N NDP 2603 D 1 
HETATM 26 O O2N NDP . . . H 3 146.838 81.393 124.324 1 120.43 ? O2N NDP 2603 D 1 
HETATM 27 O O5D NDP . . . H 3 146.832 78.964 123.445 1 128.73 ? O5D NDP 2603 D 1 
HETATM 28 C C5D NDP . . . H 3 147.047 79.124 122.07 1 120.09 ? C5D NDP 2603 D 1 
HETATM 29 C C4D NDP . . . H 3 148.394 79.021 121.824 1 119.5 ? C4D NDP 2603 D 1 
HETATM 30 O O4D NDP . . . H 3 149.197 79.921 122.797 1 125.43 ? O4D NDP 2603 D 1 
HETATM 31 C C3D NDP . . . H 3 148.878 77.531 122.101 1 149.07 ? C3D NDP 2603 D 1 
HETATM 32 O O3D NDP . . . H 3 149.615 76.99 120.914 1 166.4 ? O3D NDP 2603 D 1 
HETATM 33 C C2D NDP . . . H 3 149.603 77.604 123.135 1 151.39 ? C2D NDP 2603 D 1 
HETATM 34 O O2D NDP . . . H 3 150.718 76.668 123.129 1 198.54 ? O2D NDP 2603 D 1 
HETATM 35 C C1D NDP . . . H 3 150.163 79.179 123.221 1 129.41 ? C1D NDP 2603 D 1 
HETATM 36 N N1N NDP . . . H 3 150.484 79.443 124.579 1 105.62 ? N1N NDP 2603 D 1 
HETATM 37 C C2N NDP . . . H 3 149.58 79.962 125.39 1 126.03 ? C2N NDP 2603 D 1 
HETATM 38 C C3N NDP . . . H 3 149.87 80.218 126.722 1 137.83 ? C3N NDP 2603 D 1 
HETATM 39 C C7N NDP . . . H 3 148.829 80.826 127.661 1 129.79 ? C7N NDP 2603 D 1 
HETATM 40 O O7N NDP . . . H 3 149.175 81.325 128.678 1 128.19 ? O7N NDP 2603 D 1 
HETATM 41 N N7N NDP . . . H 3 147.421 80.801 127.309 1 99.35 ? N7N NDP 2603 D 1 
HETATM 42 C C4N NDP . . . H 3 151.139 79.909 127.186 1 148.07 ? C4N NDP 2603 D 1 
HETATM 43 C C5N NDP . . . H 3 152.064 79.356 126.315 1 104.72 ? C5N NDP 2603 D 1 
HETATM 44 C C6N NDP . . . H 3 151.693 79.133 125.002 1 99.35 ? C6N NDP 2603 D 1 
HETATM 45 P P2B NDP . . . H 3 139.352 73.286 119.487 1 147.35 ? P2B NDP 2603 D 1 
HETATM 46 O O1X NDP . . . H 3 137.851 73.446 119.431 1 136.82 ? O1X NDP 2603 D 1 
HETATM 47 O O2X NDP . . . H 3 139.789 72.378 118.369 1 125.44 -1 O2X NDP 2603 D 1 
HETATM 48 O O3X NDP . . . H 3 139.756 72.666 120.803 1 154.85 ? O3X NDP 2603 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#