data_8GKQ # _model_server_result.job_id FJl6jhuRexUpMvdoAxDMRQ _model_server_result.datetime_utc '2024-12-02 22:59:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gkq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8GKQ # _exptl.entry_id 8GKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GKQ _cell.length_a 59.255 _cell.length_b 66.074 _cell.length_c 86.794 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O PRO 177 C PRO 298 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 B O ALA 179 C ALA 300 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc3 B OD1 ASP 202 C ASP 323 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc4 B OD2 ASP 202 C ASP 323 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc5 E CA CA . C CA 501 1_555 I O HOH . C HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc6 E CA CA . C CA 501 1_555 I O HOH . C HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc7 E CA CA . C CA 501 1_555 I O HOH . C HOH 653 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 E CA CA . C CA 501 1_555 I O HOH . C HOH 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 8GKQ _atom_sites.fract_transf_matrix[1][1] 0.016876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PEG A 1 201 1 PEG PEG . D 4 EDO A 1 202 4 EDO EDO . E 5 CA C 1 501 501 CA CA . F 4 EDO C 1 502 2 EDO EDO . G 6 FMT C 1 503 3 FMT FMT . H 7 HOH A 1 301 95 HOH HOH . H 7 HOH A 2 302 99 HOH HOH . H 7 HOH A 3 303 132 HOH HOH . H 7 HOH A 4 304 103 HOH HOH . H 7 HOH A 5 305 35 HOH HOH . H 7 HOH A 6 306 115 HOH HOH . H 7 HOH A 7 307 25 HOH HOH . H 7 HOH A 8 308 111 HOH HOH . H 7 HOH A 9 309 45 HOH HOH . H 7 HOH A 10 310 10 HOH HOH . H 7 HOH A 11 311 161 HOH HOH . H 7 HOH A 12 312 33 HOH HOH . H 7 HOH A 13 313 50 HOH HOH . H 7 HOH A 14 314 36 HOH HOH . H 7 HOH A 15 315 43 HOH HOH . H 7 HOH A 16 316 71 HOH HOH . H 7 HOH A 17 317 21 HOH HOH . H 7 HOH A 18 318 46 HOH HOH . H 7 HOH A 19 319 55 HOH HOH . H 7 HOH A 20 320 59 HOH HOH . H 7 HOH A 21 321 160 HOH HOH . H 7 HOH A 22 322 73 HOH HOH . H 7 HOH A 23 323 130 HOH HOH . H 7 HOH A 24 324 117 HOH HOH . H 7 HOH A 25 325 74 HOH HOH . H 7 HOH A 26 326 112 HOH HOH . H 7 HOH A 27 327 143 HOH HOH . H 7 HOH A 28 328 28 HOH HOH . H 7 HOH A 29 329 101 HOH HOH . H 7 HOH A 30 330 106 HOH HOH . H 7 HOH A 31 331 127 HOH HOH . H 7 HOH A 32 332 119 HOH HOH . H 7 HOH A 33 333 162 HOH HOH . H 7 HOH A 34 334 51 HOH HOH . H 7 HOH A 35 335 142 HOH HOH . I 7 HOH C 1 601 64 HOH HOH . I 7 HOH C 2 602 57 HOH HOH . I 7 HOH C 3 603 72 HOH HOH . I 7 HOH C 4 604 56 HOH HOH . I 7 HOH C 5 605 1 HOH HOH . I 7 HOH C 6 606 148 HOH HOH . I 7 HOH C 7 607 88 HOH HOH . I 7 HOH C 8 608 27 HOH HOH . I 7 HOH C 9 609 49 HOH HOH . I 7 HOH C 10 610 78 HOH HOH . I 7 HOH C 11 611 100 HOH HOH . I 7 HOH C 12 612 152 HOH HOH . I 7 HOH C 13 613 144 HOH HOH . I 7 HOH C 14 614 89 HOH HOH . I 7 HOH C 15 615 118 HOH HOH . I 7 HOH C 16 616 30 HOH HOH . I 7 HOH C 17 617 121 HOH HOH . I 7 HOH C 18 618 91 HOH HOH . I 7 HOH C 19 619 138 HOH HOH . I 7 HOH C 20 620 20 HOH HOH . I 7 HOH C 21 621 154 HOH HOH . I 7 HOH C 22 622 63 HOH HOH . I 7 HOH C 23 623 24 HOH HOH . I 7 HOH C 24 624 79 HOH HOH . I 7 HOH C 25 625 146 HOH HOH . I 7 HOH C 26 626 86 HOH HOH . I 7 HOH C 27 627 44 HOH HOH . I 7 HOH C 28 628 87 HOH HOH . I 7 HOH C 29 629 90 HOH HOH . I 7 HOH C 30 630 13 HOH HOH . I 7 HOH C 31 631 14 HOH HOH . I 7 HOH C 32 632 7 HOH HOH . I 7 HOH C 33 633 124 HOH HOH . I 7 HOH C 34 634 11 HOH HOH . I 7 HOH C 35 635 31 HOH HOH . I 7 HOH C 36 636 38 HOH HOH . I 7 HOH C 37 637 76 HOH HOH . I 7 HOH C 38 638 2 HOH HOH . I 7 HOH C 39 639 81 HOH HOH . I 7 HOH C 40 640 4 HOH HOH . I 7 HOH C 41 641 133 HOH HOH . I 7 HOH C 42 642 131 HOH HOH . I 7 HOH C 43 643 102 HOH HOH . I 7 HOH C 44 644 15 HOH HOH . I 7 HOH C 45 645 68 HOH HOH . I 7 HOH C 46 646 22 HOH HOH . I 7 HOH C 47 647 48 HOH HOH . I 7 HOH C 48 648 16 HOH HOH . I 7 HOH C 49 649 84 HOH HOH . I 7 HOH C 50 650 151 HOH HOH . I 7 HOH C 51 651 123 HOH HOH . I 7 HOH C 52 652 39 HOH HOH . I 7 HOH C 53 653 134 HOH HOH . I 7 HOH C 54 654 137 HOH HOH . I 7 HOH C 55 655 155 HOH HOH . I 7 HOH C 56 656 82 HOH HOH . I 7 HOH C 57 657 8 HOH HOH . I 7 HOH C 58 658 65 HOH HOH . I 7 HOH C 59 659 3 HOH HOH . I 7 HOH C 60 660 92 HOH HOH . I 7 HOH C 61 661 157 HOH HOH . I 7 HOH C 62 662 126 HOH HOH . I 7 HOH C 63 663 18 HOH HOH . I 7 HOH C 64 664 125 HOH HOH . I 7 HOH C 65 665 54 HOH HOH . I 7 HOH C 66 666 94 HOH HOH . I 7 HOH C 67 667 75 HOH HOH . I 7 HOH C 68 668 104 HOH HOH . I 7 HOH C 69 669 32 HOH HOH . I 7 HOH C 70 670 29 HOH HOH . I 7 HOH C 71 671 80 HOH HOH . I 7 HOH C 72 672 58 HOH HOH . I 7 HOH C 73 673 23 HOH HOH . I 7 HOH C 74 674 105 HOH HOH . I 7 HOH C 75 675 60 HOH HOH . I 7 HOH C 76 676 37 HOH HOH . I 7 HOH C 77 677 17 HOH HOH . I 7 HOH C 78 678 153 HOH HOH . I 7 HOH C 79 679 5 HOH HOH . I 7 HOH C 80 680 9 HOH HOH . I 7 HOH C 81 681 12 HOH HOH . I 7 HOH C 82 682 41 HOH HOH . I 7 HOH C 83 683 69 HOH HOH . I 7 HOH C 84 684 135 HOH HOH . I 7 HOH C 85 685 109 HOH HOH . I 7 HOH C 86 686 96 HOH HOH . I 7 HOH C 87 687 122 HOH HOH . I 7 HOH C 88 688 26 HOH HOH . I 7 HOH C 89 689 77 HOH HOH . I 7 HOH C 90 690 6 HOH HOH . I 7 HOH C 91 691 47 HOH HOH . I 7 HOH C 92 692 97 HOH HOH . I 7 HOH C 93 693 116 HOH HOH . I 7 HOH C 94 694 156 HOH HOH . I 7 HOH C 95 695 141 HOH HOH . I 7 HOH C 96 696 42 HOH HOH . I 7 HOH C 97 697 120 HOH HOH . I 7 HOH C 98 698 107 HOH HOH . I 7 HOH C 99 699 34 HOH HOH . I 7 HOH C 100 700 158 HOH HOH . I 7 HOH C 101 701 114 HOH HOH . I 7 HOH C 102 702 19 HOH HOH . I 7 HOH C 103 703 40 HOH HOH . I 7 HOH C 104 704 145 HOH HOH . I 7 HOH C 105 705 150 HOH HOH . I 7 HOH C 106 706 62 HOH HOH . I 7 HOH C 107 707 98 HOH HOH . I 7 HOH C 108 708 93 HOH HOH . I 7 HOH C 109 709 136 HOH HOH . I 7 HOH C 110 710 85 HOH HOH . I 7 HOH C 111 711 61 HOH HOH . I 7 HOH C 112 712 53 HOH HOH . I 7 HOH C 113 713 140 HOH HOH . I 7 HOH C 114 714 139 HOH HOH . I 7 HOH C 115 715 110 HOH HOH . I 7 HOH C 116 716 128 HOH HOH . I 7 HOH C 117 717 113 HOH HOH . I 7 HOH C 118 718 83 HOH HOH . I 7 HOH C 119 719 149 HOH HOH . I 7 HOH C 120 720 147 HOH HOH . I 7 HOH C 121 721 159 HOH HOH . I 7 HOH C 122 722 67 HOH HOH . I 7 HOH C 123 723 129 HOH HOH . I 7 HOH C 124 724 70 HOH HOH . I 7 HOH C 125 725 66 HOH HOH . I 7 HOH C 126 726 108 HOH HOH . I 7 HOH C 127 727 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 30.754 5.833 31.476 1 46.4 ? C1 EDO 502 C 1 HETATM 2 O O1 EDO . . . F 4 29.809 5.154 32.3 1 43.42 ? O1 EDO 502 C 1 HETATM 3 C C2 EDO . . . F 4 30.384 5.573 30.027 1 47.45 ? C2 EDO 502 C 1 HETATM 4 O O2 EDO . . . F 4 31.449 4.865 29.388 1 50.27 ? O2 EDO 502 C 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #