data_8GL7 # _model_server_result.job_id x88kFgPdN_rUEuSQATRqlA _model_server_result.datetime_utc '2024-10-12 04:23:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 8GL7 # _exptl.entry_id 8GL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.462 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROGESTERONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GL7 _cell.length_a 69.714 _cell.length_b 69.714 _cell.length_c 144.439 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 O2' _chem_comp.formula_weight 314.462 _chem_comp.id STR _chem_comp.mon_nstd_flag . _chem_comp.name PROGESTERONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STR sing 303 n n C1 C10 STR sing 304 n n C1 H11 STR sing 305 n n C1 H12 STR sing 306 n n C2 C3 STR sing 307 n n C2 H21 STR sing 308 n n C2 H22 STR sing 309 n n C3 O3 STR doub 310 n n C3 C4 STR sing 311 n n C4 C5 STR doub 312 n n C4 H4 STR sing 313 n n C5 C6 STR sing 314 n n C5 C10 STR sing 315 n n C6 C7 STR sing 316 n n C6 H61 STR sing 317 n n C6 H62 STR sing 318 n n C7 C8 STR sing 319 n n C7 H71 STR sing 320 n n C7 H72 STR sing 321 n n C8 C9 STR sing 322 n n C8 C14 STR sing 323 n n C8 H8 STR sing 324 n n C9 C10 STR sing 325 n n C9 C11 STR sing 326 n n C9 H9 STR sing 327 n n C10 C19 STR sing 328 n n C11 C12 STR sing 329 n n C11 H111 STR sing 330 n n C11 H112 STR sing 331 n n C12 C13 STR sing 332 n n C12 H121 STR sing 333 n n C12 H122 STR sing 334 n n C13 C14 STR sing 335 n n C13 C17 STR sing 336 n n C13 C18 STR sing 337 n n C14 C15 STR sing 338 n n C14 H14 STR sing 339 n n C15 C16 STR sing 340 n n C15 H151 STR sing 341 n n C15 H152 STR sing 342 n n C16 C17 STR sing 343 n n C16 H161 STR sing 344 n n C16 H162 STR sing 345 n n C17 C20 STR sing 346 n n C17 H17 STR sing 347 n n C18 H181 STR sing 348 n n C18 H182 STR sing 349 n n C18 H183 STR sing 350 n n C19 H191 STR sing 351 n n C19 H192 STR sing 352 n n C19 H193 STR sing 353 n n C20 O20 STR doub 354 n n C20 C21 STR sing 355 n n C21 H211 STR sing 356 n n C21 H212 STR sing 357 n n C21 H213 STR sing 358 n n # _atom_sites.entry_id 8GL7 _atom_sites.fract_transf_matrix[1][1] 0.014344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 STR A 1 1001 1001 STR STR . D 4 GOL A 1 1002 1101 GOL GOL . E 5 HOH A 1 1101 67 HOH HOH . E 5 HOH A 2 1102 26 HOH HOH . E 5 HOH A 3 1103 49 HOH HOH . E 5 HOH A 4 1104 23 HOH HOH . E 5 HOH A 5 1105 53 HOH HOH . E 5 HOH A 6 1106 58 HOH HOH . E 5 HOH A 7 1107 47 HOH HOH . E 5 HOH A 8 1108 33 HOH HOH . E 5 HOH A 9 1109 5 HOH HOH . E 5 HOH A 10 1110 6 HOH HOH . E 5 HOH A 11 1111 52 HOH HOH . E 5 HOH A 12 1112 11 HOH HOH . E 5 HOH A 13 1113 30 HOH HOH . E 5 HOH A 14 1114 7 HOH HOH . E 5 HOH A 15 1115 4 HOH HOH . E 5 HOH A 16 1116 1 HOH HOH . E 5 HOH A 17 1117 20 HOH HOH . E 5 HOH A 18 1118 51 HOH HOH . E 5 HOH A 19 1119 8 HOH HOH . E 5 HOH A 20 1120 14 HOH HOH . E 5 HOH A 21 1121 22 HOH HOH . E 5 HOH A 22 1122 32 HOH HOH . E 5 HOH A 23 1123 39 HOH HOH . E 5 HOH A 24 1124 56 HOH HOH . E 5 HOH A 25 1125 35 HOH HOH . E 5 HOH A 26 1126 55 HOH HOH . E 5 HOH A 27 1127 18 HOH HOH . E 5 HOH A 28 1128 17 HOH HOH . E 5 HOH A 29 1129 43 HOH HOH . E 5 HOH A 30 1130 15 HOH HOH . E 5 HOH A 31 1131 2 HOH HOH . E 5 HOH A 32 1132 16 HOH HOH . E 5 HOH A 33 1133 68 HOH HOH . E 5 HOH A 34 1134 44 HOH HOH . E 5 HOH A 35 1135 48 HOH HOH . E 5 HOH A 36 1136 21 HOH HOH . E 5 HOH A 37 1137 65 HOH HOH . E 5 HOH A 38 1138 38 HOH HOH . E 5 HOH A 39 1139 12 HOH HOH . E 5 HOH A 40 1140 57 HOH HOH . E 5 HOH A 41 1141 60 HOH HOH . E 5 HOH A 42 1142 34 HOH HOH . E 5 HOH A 43 1143 42 HOH HOH . E 5 HOH A 44 1144 41 HOH HOH . E 5 HOH A 45 1145 10 HOH HOH . E 5 HOH A 46 1146 61 HOH HOH . E 5 HOH A 47 1147 66 HOH HOH . E 5 HOH A 48 1148 46 HOH HOH . E 5 HOH A 49 1149 45 HOH HOH . E 5 HOH A 50 1150 25 HOH HOH . E 5 HOH A 51 1151 50 HOH HOH . E 5 HOH A 52 1152 19 HOH HOH . E 5 HOH A 53 1153 24 HOH HOH . E 5 HOH A 54 1154 69 HOH HOH . E 5 HOH A 55 1155 63 HOH HOH . F 5 HOH D 1 801 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STR . . . C 3 -7.664 -33.171 19.26 1 32.35 ? C1 STR 1001 A 1 HETATM 2 C C2 STR . . . C 3 -6.204 -33.254 18.841 1 32.35 ? C2 STR 1001 A 1 HETATM 3 C C3 STR . . . C 3 -6.069 -33.55 17.363 1 32.35 ? C3 STR 1001 A 1 HETATM 4 O O3 STR . . . C 3 -5.148 -34.202 16.896 1 32.35 ? O3 STR 1001 A 1 HETATM 5 C C4 STR . . . C 3 -7.106 -32.992 16.501 1 32.35 ? C4 STR 1001 A 1 HETATM 6 C C5 STR . . . C 3 -8.204 -32.379 16.961 1 32.35 ? C5 STR 1001 A 1 HETATM 7 C C6 STR . . . C 3 -9.088 -31.675 16.006 1 32.35 ? C6 STR 1001 A 1 HETATM 8 C C7 STR . . . C 3 -10.57 -31.854 16.303 1 32.35 ? C7 STR 1001 A 1 HETATM 9 C C8 STR . . . C 3 -10.866 -31.584 17.761 1 32.35 ? C8 STR 1001 A 1 HETATM 10 C C9 STR . . . C 3 -9.986 -32.419 18.702 1 32.35 ? C9 STR 1001 A 1 HETATM 11 C C10 STR . . . C 3 -8.487 -32.176 18.416 1 32.35 ? C10 STR 1001 A 1 HETATM 12 C C11 STR . . . C 3 -10.379 -32.256 20.175 1 32.35 ? C11 STR 1001 A 1 HETATM 13 C C12 STR . . . C 3 -11.875 -32.496 20.44 1 32.35 ? C12 STR 1001 A 1 HETATM 14 C C13 STR . . . C 3 -12.74 -31.686 19.497 1 32.35 ? C13 STR 1001 A 1 HETATM 15 C C14 STR . . . C 3 -12.322 -31.929 18.044 1 32.35 ? C14 STR 1001 A 1 HETATM 16 C C15 STR . . . C 3 -13.405 -31.261 17.216 1 32.35 ? C15 STR 1001 A 1 HETATM 17 C C16 STR . . . C 3 -14.679 -31.441 18.082 1 32.35 ? C16 STR 1001 A 1 HETATM 18 C C17 STR . . . C 3 -14.226 -32.155 19.347 1 32.35 ? C17 STR 1001 A 1 HETATM 19 C C18 STR . . . C 3 -12.63 -30.228 19.863 1 32.35 ? C18 STR 1001 A 1 HETATM 20 C C19 STR . . . C 3 -8.105 -30.733 18.737 1 32.35 ? C19 STR 1001 A 1 HETATM 21 C C20 STR . . . C 3 -15.054 -31.931 20.591 1 32.35 ? C20 STR 1001 A 1 HETATM 22 O O20 STR . . . C 3 -15.022 -32.64 21.599 1 32.35 ? O20 STR 1001 A 1 HETATM 23 C C21 STR . . . C 3 -15.988 -30.766 20.516 1 32.35 ? C21 STR 1001 A 1 HETATM 24 H H11 STR . . . C 3 -8.065 -34.052 19.195 1 32.35 ? H11 STR 1001 A 1 HETATM 25 H H12 STR . . . C 3 -7.714 -32.915 20.194 1 32.35 ? H12 STR 1001 A 1 HETATM 26 H H21 STR . . . C 3 -5.749 -32.421 19.041 1 32.35 ? H21 STR 1001 A 1 HETATM 27 H H22 STR . . . C 3 -5.747 -33.944 19.347 1 32.35 ? H22 STR 1001 A 1 HETATM 28 H H4 STR . . . C 3 -6.976 -33.079 15.584 1 32.35 ? H4 STR 1001 A 1 HETATM 29 H H61 STR . . . C 3 -8.896 -31.993 15.11 1 32.35 ? H61 STR 1001 A 1 HETATM 30 H H62 STR . . . C 3 -8.867 -30.73 16.013 1 32.35 ? H62 STR 1001 A 1 HETATM 31 H H71 STR . . . C 3 -11.09 -31.254 15.745 1 32.35 ? H71 STR 1001 A 1 HETATM 32 H H72 STR . . . C 3 -10.843 -32.756 16.073 1 32.35 ? H72 STR 1001 A 1 HETATM 33 H H8 STR . . . C 3 -10.678 -30.65 17.942 1 32.35 ? H8 STR 1001 A 1 HETATM 34 H H9 STR . . . C 3 -10.167 -33.355 18.524 1 32.35 ? H9 STR 1001 A 1 HETATM 35 H H111 STR . . . C 3 -9.871 -32.867 20.731 1 32.35 ? H111 STR 1001 A 1 HETATM 36 H H112 STR . . . C 3 -10.155 -31.365 20.488 1 32.35 ? H112 STR 1001 A 1 HETATM 37 H H121 STR . . . C 3 -12.08 -33.438 20.338 1 32.35 ? H121 STR 1001 A 1 HETATM 38 H H122 STR . . . C 3 -12.089 -32.261 21.357 1 32.35 ? H122 STR 1001 A 1 HETATM 39 H H14 STR . . . C 3 -12.414 -32.886 17.909 1 32.35 ? H14 STR 1001 A 1 HETATM 40 H H151 STR . . . C 3 -13.21 -30.324 17.056 1 32.35 ? H151 STR 1001 A 1 HETATM 41 H H152 STR . . . C 3 -13.501 -31.677 16.345 1 32.35 ? H152 STR 1001 A 1 HETATM 42 H H161 STR . . . C 3 -15.087 -30.59 18.303 1 32.35 ? H161 STR 1001 A 1 HETATM 43 H H162 STR . . . C 3 -15.355 -31.964 17.624 1 32.35 ? H162 STR 1001 A 1 HETATM 44 H H17 STR . . . C 3 -14.235 -33.11 19.178 1 32.35 ? H17 STR 1001 A 1 HETATM 45 H H181 STR . . . C 3 -12.916 -30.078 20.777 1 32.35 ? H181 STR 1001 A 1 HETATM 46 H H182 STR . . . C 3 -13.184 -29.683 19.282 1 32.35 ? H182 STR 1001 A 1 HETATM 47 H H183 STR . . . C 3 -11.715 -29.919 19.78 1 32.35 ? H183 STR 1001 A 1 HETATM 48 H H191 STR . . . C 3 -7.728 -30.289 17.962 1 32.35 ? H191 STR 1001 A 1 HETATM 49 H H192 STR . . . C 3 -8.878 -30.221 19.024 1 32.35 ? H192 STR 1001 A 1 HETATM 50 H H193 STR . . . C 3 -7.446 -30.695 19.448 1 32.35 ? H193 STR 1001 A 1 HETATM 51 H H211 STR . . . C 3 -16.681 -30.899 19.851 1 32.35 ? H211 STR 1001 A 1 HETATM 52 H H212 STR . . . C 3 -16.436 -30.607 21.362 1 32.35 ? H212 STR 1001 A 1 HETATM 53 H H213 STR . . . C 3 -15.526 -29.946 20.283 1 32.35 ? H213 STR 1001 A 1 # _model_server_stats.io_time_ms 121 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #