data_8GL7 # _model_server_result.job_id 0t8Qi65bHXakF6JSydoauQ _model_server_result.datetime_utc '2024-10-12 04:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 8GL7 # _exptl.entry_id 8GL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GL7 _cell.length_a 69.714 _cell.length_b 69.714 _cell.length_c 144.439 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8GL7 _atom_sites.fract_transf_matrix[1][1] 0.014344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 STR A 1 1001 1001 STR STR . D 4 GOL A 1 1002 1101 GOL GOL . E 5 HOH A 1 1101 67 HOH HOH . E 5 HOH A 2 1102 26 HOH HOH . E 5 HOH A 3 1103 49 HOH HOH . E 5 HOH A 4 1104 23 HOH HOH . E 5 HOH A 5 1105 53 HOH HOH . E 5 HOH A 6 1106 58 HOH HOH . E 5 HOH A 7 1107 47 HOH HOH . E 5 HOH A 8 1108 33 HOH HOH . E 5 HOH A 9 1109 5 HOH HOH . E 5 HOH A 10 1110 6 HOH HOH . E 5 HOH A 11 1111 52 HOH HOH . E 5 HOH A 12 1112 11 HOH HOH . E 5 HOH A 13 1113 30 HOH HOH . E 5 HOH A 14 1114 7 HOH HOH . E 5 HOH A 15 1115 4 HOH HOH . E 5 HOH A 16 1116 1 HOH HOH . E 5 HOH A 17 1117 20 HOH HOH . E 5 HOH A 18 1118 51 HOH HOH . E 5 HOH A 19 1119 8 HOH HOH . E 5 HOH A 20 1120 14 HOH HOH . E 5 HOH A 21 1121 22 HOH HOH . E 5 HOH A 22 1122 32 HOH HOH . E 5 HOH A 23 1123 39 HOH HOH . E 5 HOH A 24 1124 56 HOH HOH . E 5 HOH A 25 1125 35 HOH HOH . E 5 HOH A 26 1126 55 HOH HOH . E 5 HOH A 27 1127 18 HOH HOH . E 5 HOH A 28 1128 17 HOH HOH . E 5 HOH A 29 1129 43 HOH HOH . E 5 HOH A 30 1130 15 HOH HOH . E 5 HOH A 31 1131 2 HOH HOH . E 5 HOH A 32 1132 16 HOH HOH . E 5 HOH A 33 1133 68 HOH HOH . E 5 HOH A 34 1134 44 HOH HOH . E 5 HOH A 35 1135 48 HOH HOH . E 5 HOH A 36 1136 21 HOH HOH . E 5 HOH A 37 1137 65 HOH HOH . E 5 HOH A 38 1138 38 HOH HOH . E 5 HOH A 39 1139 12 HOH HOH . E 5 HOH A 40 1140 57 HOH HOH . E 5 HOH A 41 1141 60 HOH HOH . E 5 HOH A 42 1142 34 HOH HOH . E 5 HOH A 43 1143 42 HOH HOH . E 5 HOH A 44 1144 41 HOH HOH . E 5 HOH A 45 1145 10 HOH HOH . E 5 HOH A 46 1146 61 HOH HOH . E 5 HOH A 47 1147 66 HOH HOH . E 5 HOH A 48 1148 46 HOH HOH . E 5 HOH A 49 1149 45 HOH HOH . E 5 HOH A 50 1150 25 HOH HOH . E 5 HOH A 51 1151 50 HOH HOH . E 5 HOH A 52 1152 19 HOH HOH . E 5 HOH A 53 1153 24 HOH HOH . E 5 HOH A 54 1154 69 HOH HOH . E 5 HOH A 55 1155 63 HOH HOH . F 5 HOH D 1 801 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 2.24 -31.871 16.461 1 32.35 ? C1 GOL 1002 A 1 HETATM 2 O O1 GOL . . . D 4 2.94 -31.1 15.425 1 32.35 ? O1 GOL 1002 A 1 HETATM 3 C C2 GOL . . . D 4 0.833 -31.176 16.769 1 32.35 ? C2 GOL 1002 A 1 HETATM 4 O O2 GOL . . . D 4 0.945 -29.787 16.819 1 32.35 ? O2 GOL 1002 A 1 HETATM 5 C C3 GOL . . . D 4 0.395 -31.828 18.086 1 32.35 ? C3 GOL 1002 A 1 HETATM 6 O O3 GOL . . . D 4 1.187 -31.277 19.161 1 32.35 ? O3 GOL 1002 A 1 HETATM 7 H H11 GOL . . . D 4 2.748 -31.923 17.286 1 32.35 ? H11 GOL 1002 A 1 HETATM 8 H H12 GOL . . . D 4 2.08 -32.789 16.19 1 32.35 ? H12 GOL 1002 A 1 HETATM 9 H HO1 GOL . . . D 4 3.646 -31.519 15.268 1 32.35 ? HO1 GOL 1002 A 1 HETATM 10 H H2 GOL . . . D 4 0.175 -31.338 16.076 1 32.35 ? H2 GOL 1002 A 1 HETATM 11 H HO2 GOL . . . D 4 0.966 -29.573 17.645 1 32.35 ? HO2 GOL 1002 A 1 HETATM 12 H H31 GOL . . . D 4 0.493 -32.789 17.997 1 32.35 ? H31 GOL 1002 A 1 HETATM 13 H H32 GOL . . . D 4 -0.556 -31.677 18.199 1 32.35 ? H32 GOL 1002 A 1 HETATM 14 H HO3 GOL . . . D 4 0.904 -31.629 19.868 1 32.35 ? HO3 GOL 1002 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #