data_8GLI # _model_server_result.job_id -b-bbtxWQJmBnhC8rrmlzw _model_server_result.datetime_utc '2024-11-24 21:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gli # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 8GLI # _exptl.entry_id 8GLI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GLI _cell.length_a 57.234 _cell.length_b 76.601 _cell.length_c 92.444 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GLI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 3 6 1 FUC NAG C1 O1 . O3 HO3 . sing 6 ? 3 7 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 1 NAG 3 n C NAG 2 C 2 NAG C 2 NAG 3 n C BMA 3 C 3 BMA C 3 BMA 3 n C MAN 4 C 4 MAN C 4 MAN 3 n C MAN 5 C 5 MAN C 5 MAN 3 n C FUC 6 C 6 FUC C 6 FUC 3 n C FUC 7 C 7 FUC C 7 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 102 1_555 A SG CYS 165 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf2 A SG CYS 130 A CYS 131 1_555 A SG CYS 144 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 A SG CYS 205 A CYS 206 1_555 A SG CYS 260 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 27 B CYS 27 1_555 B SG CYS 82 B CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 A ND2 ASN 56 A ASN 57 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 127 A ASN 128 1_555 E C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale4 C O3 NAG . C NAG 1 1_555 C C1 FUC . C FUC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GLI _atom_sites.fract_transf_matrix[1][1] 0.017472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013055 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZR2 A 1 401 1 ZR2 C85 . E 5 NAG A 1 402 9 NAG NAG . F 6 CL A 1 403 1 CL CL . G 7 IOD A 1 404 1 IOD IOD . H 7 IOD B 1 201 2 IOD IOD . I 7 IOD B 1 202 3 IOD IOD . J 8 HOH A 1 501 209 HOH HOH . J 8 HOH A 2 502 147 HOH HOH . J 8 HOH A 3 503 122 HOH HOH . J 8 HOH A 4 504 205 HOH HOH . J 8 HOH A 5 505 155 HOH HOH . J 8 HOH A 6 506 127 HOH HOH . J 8 HOH A 7 507 10 HOH HOH . J 8 HOH A 8 508 89 HOH HOH . J 8 HOH A 9 509 169 HOH HOH . J 8 HOH A 10 510 98 HOH HOH . J 8 HOH A 11 511 193 HOH HOH . J 8 HOH A 12 512 211 HOH HOH . J 8 HOH A 13 513 70 HOH HOH . J 8 HOH A 14 514 138 HOH HOH . J 8 HOH A 15 515 67 HOH HOH . J 8 HOH A 16 516 12 HOH HOH . J 8 HOH A 17 517 203 HOH HOH . J 8 HOH A 18 518 80 HOH HOH . J 8 HOH A 19 519 55 HOH HOH . J 8 HOH A 20 520 112 HOH HOH . J 8 HOH A 21 521 68 HOH HOH . J 8 HOH A 22 522 103 HOH HOH . J 8 HOH A 23 523 125 HOH HOH . J 8 HOH A 24 524 13 HOH HOH . J 8 HOH A 25 525 43 HOH HOH . J 8 HOH A 26 526 133 HOH HOH . J 8 HOH A 27 527 92 HOH HOH . J 8 HOH A 28 528 208 HOH HOH . J 8 HOH A 29 529 163 HOH HOH . J 8 HOH A 30 530 187 HOH HOH . J 8 HOH A 31 531 7 HOH HOH . J 8 HOH A 32 532 14 HOH HOH . J 8 HOH A 33 533 104 HOH HOH . J 8 HOH A 34 534 105 HOH HOH . J 8 HOH A 35 535 21 HOH HOH . J 8 HOH A 36 536 109 HOH HOH . J 8 HOH A 37 537 63 HOH HOH . J 8 HOH A 38 538 96 HOH HOH . J 8 HOH A 39 539 82 HOH HOH . J 8 HOH A 40 540 99 HOH HOH . J 8 HOH A 41 541 35 HOH HOH . J 8 HOH A 42 542 123 HOH HOH . J 8 HOH A 43 543 152 HOH HOH . J 8 HOH A 44 544 31 HOH HOH . J 8 HOH A 45 545 113 HOH HOH . J 8 HOH A 46 546 46 HOH HOH . J 8 HOH A 47 547 3 HOH HOH . J 8 HOH A 48 548 36 HOH HOH . J 8 HOH A 49 549 39 HOH HOH . J 8 HOH A 50 550 170 HOH HOH . J 8 HOH A 51 551 167 HOH HOH . J 8 HOH A 52 552 177 HOH HOH . J 8 HOH A 53 553 114 HOH HOH . J 8 HOH A 54 554 9 HOH HOH . J 8 HOH A 55 555 20 HOH HOH . J 8 HOH A 56 556 174 HOH HOH . J 8 HOH A 57 557 172 HOH HOH . J 8 HOH A 58 558 32 HOH HOH . J 8 HOH A 59 559 47 HOH HOH . J 8 HOH A 60 560 117 HOH HOH . J 8 HOH A 61 561 50 HOH HOH . J 8 HOH A 62 562 49 HOH HOH . J 8 HOH A 63 563 142 HOH HOH . J 8 HOH A 64 564 27 HOH HOH . J 8 HOH A 65 565 97 HOH HOH . J 8 HOH A 66 566 22 HOH HOH . J 8 HOH A 67 567 44 HOH HOH . J 8 HOH A 68 568 38 HOH HOH . J 8 HOH A 69 569 175 HOH HOH . J 8 HOH A 70 570 34 HOH HOH . J 8 HOH A 71 571 4 HOH HOH . J 8 HOH A 72 572 56 HOH HOH . J 8 HOH A 73 573 75 HOH HOH . J 8 HOH A 74 574 120 HOH HOH . J 8 HOH A 75 575 81 HOH HOH . J 8 HOH A 76 576 110 HOH HOH . J 8 HOH A 77 577 69 HOH HOH . J 8 HOH A 78 578 8 HOH HOH . J 8 HOH A 79 579 73 HOH HOH . J 8 HOH A 80 580 128 HOH HOH . J 8 HOH A 81 581 78 HOH HOH . J 8 HOH A 82 582 33 HOH HOH . J 8 HOH A 83 583 72 HOH HOH . J 8 HOH A 84 584 41 HOH HOH . J 8 HOH A 85 585 30 HOH HOH . J 8 HOH A 86 586 48 HOH HOH . J 8 HOH A 87 587 87 HOH HOH . J 8 HOH A 88 588 130 HOH HOH . J 8 HOH A 89 589 17 HOH HOH . J 8 HOH A 90 590 52 HOH HOH . J 8 HOH A 91 591 5 HOH HOH . J 8 HOH A 92 592 24 HOH HOH . J 8 HOH A 93 593 37 HOH HOH . J 8 HOH A 94 594 179 HOH HOH . J 8 HOH A 95 595 23 HOH HOH . J 8 HOH A 96 596 198 HOH HOH . J 8 HOH A 97 597 171 HOH HOH . J 8 HOH A 98 598 180 HOH HOH . J 8 HOH A 99 599 18 HOH HOH . J 8 HOH A 100 600 26 HOH HOH . J 8 HOH A 101 601 6 HOH HOH . J 8 HOH A 102 602 184 HOH HOH . J 8 HOH A 103 603 194 HOH HOH . J 8 HOH A 104 604 165 HOH HOH . J 8 HOH A 105 605 162 HOH HOH . J 8 HOH A 106 606 189 HOH HOH . J 8 HOH A 107 607 164 HOH HOH . J 8 HOH A 108 608 94 HOH HOH . J 8 HOH A 109 609 176 HOH HOH . J 8 HOH A 110 610 60 HOH HOH . J 8 HOH A 111 611 191 HOH HOH . J 8 HOH A 112 612 121 HOH HOH . J 8 HOH A 113 613 118 HOH HOH . J 8 HOH A 114 614 84 HOH HOH . J 8 HOH A 115 615 111 HOH HOH . J 8 HOH A 116 616 188 HOH HOH . J 8 HOH A 117 617 196 HOH HOH . J 8 HOH A 118 618 149 HOH HOH . J 8 HOH A 119 619 59 HOH HOH . J 8 HOH A 120 620 101 HOH HOH . J 8 HOH A 121 621 190 HOH HOH . J 8 HOH A 122 622 143 HOH HOH . J 8 HOH A 123 623 199 HOH HOH . J 8 HOH A 124 624 61 HOH HOH . J 8 HOH A 125 625 132 HOH HOH . J 8 HOH A 126 626 181 HOH HOH . J 8 HOH A 127 627 65 HOH HOH . J 8 HOH A 128 628 51 HOH HOH . J 8 HOH A 129 629 145 HOH HOH . J 8 HOH A 130 630 158 HOH HOH . J 8 HOH A 131 631 136 HOH HOH . J 8 HOH A 132 632 173 HOH HOH . J 8 HOH A 133 633 185 HOH HOH . J 8 HOH A 134 634 102 HOH HOH . J 8 HOH A 135 635 40 HOH HOH . J 8 HOH A 136 636 204 HOH HOH . J 8 HOH A 137 637 144 HOH HOH . J 8 HOH A 138 638 202 HOH HOH . J 8 HOH A 139 639 116 HOH HOH . J 8 HOH A 140 640 197 HOH HOH . J 8 HOH A 141 641 206 HOH HOH . J 8 HOH A 142 642 135 HOH HOH . J 8 HOH A 143 643 115 HOH HOH . J 8 HOH A 144 644 201 HOH HOH . J 8 HOH A 145 645 108 HOH HOH . J 8 HOH A 146 646 64 HOH HOH . J 8 HOH A 147 647 90 HOH HOH . J 8 HOH A 148 648 160 HOH HOH . J 8 HOH A 149 649 91 HOH HOH . J 8 HOH A 150 650 192 HOH HOH . J 8 HOH A 151 651 156 HOH HOH . J 8 HOH A 152 652 106 HOH HOH . J 8 HOH A 153 653 186 HOH HOH . J 8 HOH A 154 654 88 HOH HOH . J 8 HOH A 155 655 166 HOH HOH . J 8 HOH A 156 656 93 HOH HOH . J 8 HOH A 157 657 200 HOH HOH . J 8 HOH A 158 658 207 HOH HOH . J 8 HOH A 159 659 153 HOH HOH . J 8 HOH A 160 660 159 HOH HOH . J 8 HOH A 161 661 148 HOH HOH . J 8 HOH A 162 662 124 HOH HOH . K 8 HOH B 1 301 182 HOH HOH . K 8 HOH B 2 302 183 HOH HOH . K 8 HOH B 3 303 71 HOH HOH . K 8 HOH B 4 304 157 HOH HOH . K 8 HOH B 5 305 161 HOH HOH . K 8 HOH B 6 306 131 HOH HOH . K 8 HOH B 7 307 1 HOH HOH . K 8 HOH B 8 308 29 HOH HOH . K 8 HOH B 9 309 126 HOH HOH . K 8 HOH B 10 310 2 HOH HOH . K 8 HOH B 11 311 16 HOH HOH . K 8 HOH B 12 312 53 HOH HOH . K 8 HOH B 13 313 62 HOH HOH . K 8 HOH B 14 314 11 HOH HOH . K 8 HOH B 15 315 28 HOH HOH . K 8 HOH B 16 316 57 HOH HOH . K 8 HOH B 17 317 86 HOH HOH . K 8 HOH B 18 318 151 HOH HOH . K 8 HOH B 19 319 119 HOH HOH . K 8 HOH B 20 320 79 HOH HOH . K 8 HOH B 21 321 134 HOH HOH . K 8 HOH B 22 322 25 HOH HOH . K 8 HOH B 23 323 15 HOH HOH . K 8 HOH B 24 324 66 HOH HOH . K 8 HOH B 25 325 45 HOH HOH . K 8 HOH B 26 326 139 HOH HOH . K 8 HOH B 27 327 74 HOH HOH . K 8 HOH B 28 328 150 HOH HOH . K 8 HOH B 29 329 83 HOH HOH . K 8 HOH B 30 330 42 HOH HOH . K 8 HOH B 31 331 195 HOH HOH . K 8 HOH B 32 332 100 HOH HOH . K 8 HOH B 33 333 77 HOH HOH . K 8 HOH B 34 334 19 HOH HOH . K 8 HOH B 35 335 129 HOH HOH . K 8 HOH B 36 336 168 HOH HOH . K 8 HOH B 37 337 140 HOH HOH . K 8 HOH B 38 338 212 HOH HOH . K 8 HOH B 39 339 76 HOH HOH . K 8 HOH B 40 340 146 HOH HOH . K 8 HOH B 41 341 107 HOH HOH . K 8 HOH B 42 342 154 HOH HOH . K 8 HOH B 43 343 210 HOH HOH . K 8 HOH B 44 344 213 HOH HOH . K 8 HOH B 45 345 54 HOH HOH . K 8 HOH B 46 346 141 HOH HOH . K 8 HOH B 47 347 58 HOH HOH . K 8 HOH B 48 348 85 HOH HOH . K 8 HOH B 49 349 178 HOH HOH . K 8 HOH B 50 350 137 HOH HOH . K 8 HOH B 51 351 95 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x 14.991 _atom_site.Cartn_y -20.121 _atom_site.Cartn_z 2.442 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #