data_8GM2
#
_model_server_result.job_id            kwKTOOqVuH89emiqE_sA-w 
_model_server_result.datetime_utc      '2024-11-15 16:04:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gm2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8GM2 
#
_exptl.entry_id    8GM2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.31 
_cell.angle_gamma         90 
_cell.entry_id            8GM2 
_cell.length_a            44.372 
_cell.length_b            51.64 
_cell.length_c            79.055 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GM2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 359 A CYS 358 1_555 C FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc2 C FE HEM . A HEM 502 1_555 D O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 148 n n 
CHA C4D HEM doub 149 n n 
CHA HHA HEM sing 150 n n 
CHB C4A HEM sing 151 n n 
CHB C1B HEM doub 152 n n 
CHB HHB HEM sing 153 n n 
CHC C4B HEM sing 154 n n 
CHC C1C HEM doub 155 n n 
CHC HHC HEM sing 156 n n 
CHD C4C HEM doub 157 n n 
CHD C1D HEM sing 158 n n 
CHD HHD HEM sing 159 n n 
C1A C2A HEM doub 160 n y 
C1A NA HEM sing 161 n y 
C2A C3A HEM sing 162 n y 
C2A CAA HEM sing 163 n n 
C3A C4A HEM doub 164 n y 
C3A CMA HEM sing 165 n n 
C4A NA HEM sing 166 n y 
CMA HMA HEM sing 167 n n 
CMA HMAA HEM sing 168 n n 
CMA HMAB HEM sing 169 n n 
CAA CBA HEM sing 170 n n 
CAA HAA HEM sing 171 n n 
CAA HAAA HEM sing 172 n n 
CBA CGA HEM sing 173 n n 
CBA HBA HEM sing 174 n n 
CBA HBAA HEM sing 175 n n 
CGA O1A HEM doub 176 n n 
CGA O2A HEM sing 177 n n 
C1B C2B HEM sing 178 n n 
C1B NB HEM sing 179 n n 
C2B C3B HEM doub 180 n n 
C2B CMB HEM sing 181 n n 
C3B C4B HEM sing 182 n n 
C3B CAB HEM sing 183 n n 
C4B NB HEM doub 184 n n 
CMB HMB HEM sing 185 n n 
CMB HMBA HEM sing 186 n n 
CMB HMBB HEM sing 187 n n 
CAB CBB HEM doub 188 n n 
CAB HAB HEM sing 189 n n 
CBB HBB HEM sing 190 n n 
CBB HBBA HEM sing 191 n n 
C1C C2C HEM sing 192 n y 
C1C NC HEM sing 193 n y 
C2C C3C HEM doub 194 n y 
C2C CMC HEM sing 195 n n 
C3C C4C HEM sing 196 n y 
C3C CAC HEM sing 197 n n 
C4C NC HEM sing 198 n y 
CMC HMC HEM sing 199 n n 
CMC HMCA HEM sing 200 n n 
CMC HMCB HEM sing 201 n n 
CAC CBC HEM doub 202 n n 
CAC HAC HEM sing 203 n n 
CBC HBC HEM sing 204 n n 
CBC HBCA HEM sing 205 n n 
C1D C2D HEM sing 206 n n 
C1D ND HEM doub 207 n n 
C2D C3D HEM doub 208 n n 
C2D CMD HEM sing 209 n n 
C3D C4D HEM sing 210 n n 
C3D CAD HEM sing 211 n n 
C4D ND HEM sing 212 n n 
CMD HMD HEM sing 213 n n 
CMD HMDA HEM sing 214 n n 
CMD HMDB HEM sing 215 n n 
CAD CBD HEM sing 216 n n 
CAD HAD HEM sing 217 n n 
CAD HADA HEM sing 218 n n 
CBD CGD HEM sing 219 n n 
CBD HBD HEM sing 220 n n 
CBD HBDA HEM sing 221 n n 
CGD O1D HEM doub 222 n n 
CGD O2D HEM sing 223 n n 
O2A H2A HEM sing 224 n n 
O2D H2D HEM sing 225 n n 
FE NA HEM sing 226 n n 
FE NB HEM sing 227 n n 
FE NC HEM sing 228 n n 
FE ND HEM sing 229 n n 
#
_atom_sites.entry_id                     8GM2 
_atom_sites.fract_transf_matrix[1][1]    0.022537 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00091 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANN A 1 501 501 ANN LIG . 
C 3 HEM A 1 502 502 HEM HEM . 
D 4 HOH A 1 601 56 HOH HOH . 
D 4 HOH A 2 602 23 HOH HOH . 
D 4 HOH A 3 603 1 HOH HOH . 
D 4 HOH A 4 604 47 HOH HOH . 
D 4 HOH A 5 605 26 HOH HOH . 
D 4 HOH A 6 606 64 HOH HOH . 
D 4 HOH A 7 607 68 HOH HOH . 
D 4 HOH A 8 608 60 HOH HOH . 
D 4 HOH A 9 609 4 HOH HOH . 
D 4 HOH A 10 610 45 HOH HOH . 
D 4 HOH A 11 611 8 HOH HOH . 
D 4 HOH A 12 612 30 HOH HOH . 
D 4 HOH A 13 613 12 HOH HOH . 
D 4 HOH A 14 614 7 HOH HOH . 
D 4 HOH A 15 615 35 HOH HOH . 
D 4 HOH A 16 616 14 HOH HOH . 
D 4 HOH A 17 617 18 HOH HOH . 
D 4 HOH A 18 618 54 HOH HOH . 
D 4 HOH A 19 619 40 HOH HOH . 
D 4 HOH A 20 620 44 HOH HOH . 
D 4 HOH A 21 621 16 HOH HOH . 
D 4 HOH A 22 622 70 HOH HOH . 
D 4 HOH A 23 623 2 HOH HOH . 
D 4 HOH A 24 624 28 HOH HOH . 
D 4 HOH A 25 625 43 HOH HOH . 
D 4 HOH A 26 626 19 HOH HOH . 
D 4 HOH A 27 627 3 HOH HOH . 
D 4 HOH A 28 628 10 HOH HOH . 
D 4 HOH A 29 629 57 HOH HOH . 
D 4 HOH A 30 630 5 HOH HOH . 
D 4 HOH A 31 631 20 HOH HOH . 
D 4 HOH A 32 632 33 HOH HOH . 
D 4 HOH A 33 633 29 HOH HOH . 
D 4 HOH A 34 634 6 HOH HOH . 
D 4 HOH A 35 635 9 HOH HOH . 
D 4 HOH A 36 636 27 HOH HOH . 
D 4 HOH A 37 637 39 HOH HOH . 
D 4 HOH A 38 638 49 HOH HOH . 
D 4 HOH A 39 639 41 HOH HOH . 
D 4 HOH A 40 640 21 HOH HOH . 
D 4 HOH A 41 641 11 HOH HOH . 
D 4 HOH A 42 642 59 HOH HOH . 
D 4 HOH A 43 643 69 HOH HOH . 
D 4 HOH A 44 644 22 HOH HOH . 
D 4 HOH A 45 645 73 HOH HOH . 
D 4 HOH A 46 646 67 HOH HOH . 
D 4 HOH A 47 647 13 HOH HOH . 
D 4 HOH A 48 648 32 HOH HOH . 
D 4 HOH A 49 649 63 HOH HOH . 
D 4 HOH A 50 650 36 HOH HOH . 
D 4 HOH A 51 651 15 HOH HOH . 
D 4 HOH A 52 652 52 HOH HOH . 
D 4 HOH A 53 653 62 HOH HOH . 
D 4 HOH A 54 654 37 HOH HOH . 
D 4 HOH A 55 655 17 HOH HOH . 
D 4 HOH A 56 656 25 HOH HOH . 
D 4 HOH A 57 657 46 HOH HOH . 
D 4 HOH A 58 658 34 HOH HOH . 
D 4 HOH A 59 659 24 HOH HOH . 
D 4 HOH A 60 660 48 HOH HOH . 
D 4 HOH A 61 661 31 HOH HOH . 
D 4 HOH A 62 662 61 HOH HOH . 
D 4 HOH A 63 663 50 HOH HOH . 
D 4 HOH A 64 664 38 HOH HOH . 
D 4 HOH A 65 665 55 HOH HOH . 
D 4 HOH A 66 666 72 HOH HOH . 
D 4 HOH A 67 667 58 HOH HOH . 
D 4 HOH A 68 668 65 HOH HOH . 
D 4 HOH A 69 669 53 HOH HOH . 
D 4 HOH A 70 670 42 HOH HOH . 
D 4 HOH A 71 671 51 HOH HOH . 
D 4 HOH A 72 672 66 HOH HOH . 
D 4 HOH A 73 673 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 0.621 -0.99 16.361 1 33 ? CHA HEM 502 A 1 
HETATM 2 C CHB HEM . . . C 3 2.612 -5.147 17.912 1 33.18 ? CHB HEM 502 A 1 
HETATM 3 C CHC HEM . . . C 3 5.565 -5.063 14.069 1 36.01 ? CHC HEM 502 A 1 
HETATM 4 C CHD HEM . . . C 3 4.481 -0.377 13.476 1 36.53 ? CHD HEM 502 A 1 
HETATM 5 C C1A HEM . . . C 3 0.819 -2.163 17.064 1 33.43 ? C1A HEM 502 A 1 
HETATM 6 C C2A HEM . . . C 3 -0.036 -2.722 18.094 1 35.15 ? C2A HEM 502 A 1 
HETATM 7 C C3A HEM . . . C 3 0.515 -3.864 18.52 1 35.06 ? C3A HEM 502 A 1 
HETATM 8 C C4A HEM . . . C 3 1.742 -4.081 17.78 1 35.44 ? C4A HEM 502 A 1 
HETATM 9 C CMA HEM . . . C 3 -0.059 -4.79 19.613 1 35.92 ? CMA HEM 502 A 1 
HETATM 10 C CAA HEM . . . C 3 -1.357 -2.114 18.615 1 30.78 ? CAA HEM 502 A 1 
HETATM 11 C CBA HEM . . . C 3 -1.077 -0.909 19.503 1 31.8 ? CBA HEM 502 A 1 
HETATM 12 C CGA HEM . . . C 3 -2.376 -0.424 20.093 1 37.28 ? CGA HEM 502 A 1 
HETATM 13 O O1A HEM . . . C 3 -2.345 0.48 20.97 1 37.8 ? O1A HEM 502 A 1 
HETATM 14 O O2A HEM . . . C 3 -3.448 -0.944 19.686 1 37.91 ? O2A HEM 502 A 1 
HETATM 15 C C1B HEM . . . C 3 3.563 -5.526 16.986 1 33.96 ? C1B HEM 502 A 1 
HETATM 16 C C2B HEM . . . C 3 4.32 -6.765 16.976 1 34.94 ? C2B HEM 502 A 1 
HETATM 17 C C3B HEM . . . C 3 5.139 -6.744 15.904 1 35.2 ? C3B HEM 502 A 1 
HETATM 18 C C4B HEM . . . C 3 4.925 -5.486 15.215 1 36.81 ? C4B HEM 502 A 1 
HETATM 19 C CMB HEM . . . C 3 4.152 -7.872 18.042 1 27.61 ? CMB HEM 502 A 1 
HETATM 20 C CAB HEM . . . C 3 6.171 -7.791 15.4 1 36.16 ? CAB HEM 502 A 1 
HETATM 21 C CBB HEM . . . C 3 6.489 -8.932 16.022 1 36.07 ? CBB HEM 502 A 1 
HETATM 22 C C1C HEM . . . C 3 5.516 -3.79 13.54 1 34.9 ? C1C HEM 502 A 1 
HETATM 23 C C2C HEM . . . C 3 6.172 -3.336 12.327 1 35.56 ? C2C HEM 502 A 1 
HETATM 24 C C3C HEM . . . C 3 5.878 -2.029 12.16 1 38.96 ? C3C HEM 502 A 1 
HETATM 25 C C4C HEM . . . C 3 5.019 -1.631 13.262 1 37.01 ? C4C HEM 502 A 1 
HETATM 26 C CMC HEM . . . C 3 7.059 -4.255 11.452 1 33.68 ? CMC HEM 502 A 1 
HETATM 27 C CAC HEM . . . C 3 6.309 -1.036 11.046 1 34.33 ? CAC HEM 502 A 1 
HETATM 28 C CBC HEM . . . C 3 7.093 -1.338 10.004 1 37.53 ? CBC HEM 502 A 1 
HETATM 29 C C1D HEM . . . C 3 3.311 -0.123 14.165 1 38.11 ? C1D HEM 502 A 1 
HETATM 30 C C2D HEM . . . C 3 2.538 1.107 14.16 1 37.69 ? C2D HEM 502 A 1 
HETATM 31 C C3D HEM . . . C 3 1.479 0.933 14.957 1 37.26 ? C3D HEM 502 A 1 
HETATM 32 C C4D HEM . . . C 3 1.528 -0.411 15.496 1 32.84 ? C4D HEM 502 A 1 
HETATM 33 C CMD HEM . . . C 3 2.88 2.393 13.374 1 37.48 ? CMD HEM 502 A 1 
HETATM 34 C CAD HEM . . . C 3 0.374 1.97 15.245 1 31.25 ? CAD HEM 502 A 1 
HETATM 35 C CBD HEM . . . C 3 -0.786 1.626 14.316 1 29.65 ? CBD HEM 502 A 1 
HETATM 36 C CGD HEM . . . C 3 -2.039 2.34 14.743 1 32.99 ? CGD HEM 502 A 1 
HETATM 37 O O1D HEM . . . C 3 -3.069 2.219 14.029 1 35.6 ? O1D HEM 502 A 1 
HETATM 38 O O2D HEM . . . C 3 -2.009 3.04 15.787 1 35.68 ? O2D HEM 502 A 1 
HETATM 39 N NA HEM . . . C 3 1.89 -3.021 16.903 1 35.41 ? NA HEM 502 A 1 
HETATM 40 N NB HEM . . . C 3 3.96 -4.776 15.898 1 39.51 ? NB HEM 502 A 1 
HETATM 41 N NC HEM . . . C 3 4.821 -2.728 14.076 1 36.9 ? NC HEM 502 A 1 
HETATM 42 N ND HEM . . . C 3 2.661 -1.02 14.992 1 36.49 ? ND HEM 502 A 1 
HETATM 43 FE FE HEM . . . C 3 3.26 -2.931 15.377 1 33.97 ? FE HEM 502 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#