data_8GM9
#
_model_server_result.job_id            yaHqBFHh0BfJmkPRiYC1Ag 
_model_server_result.datetime_utc      '2024-11-14 09:55:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gm9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":406}' 
#
_entry.id    8GM9 
#
_exptl.entry_id    8GM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              72.063 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACRYLIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.73 
_cell.angle_gamma         90 
_cell.entry_id            8GM9 
_cell.length_a            75.33 
_cell.length_b            121.033 
_cell.length_c            99.584 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,T,U,V,W,X,AA 1 1 
B,C,K,L,M,N,O,P,Q,R,S,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 N N N 
? 4 S N N 
? 4 W N N 
#
_chem_comp.formula           'C3 H4 O2' 
_chem_comp.formula_weight    72.063 
_chem_comp.id                AKR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACRYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA CB AKR doub 1 n n 
CA C AKR sing 2 n n 
CA HA1 AKR sing 3 n n 
CB HB2 AKR sing 4 n n 
CB HB3 AKR sing 5 n n 
C O AKR doub 6 n n 
C OXT AKR sing 7 n n 
OXT HXT AKR sing 8 n n 
#
_atom_sites.entry_id                     8GM9 
_atom_sites.fract_transf_matrix[1][1]    0.013275 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001099 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010076 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO A 1 401 402 EDO EDO . 
F 2 EDO A 1 402 403 EDO EDO . 
G 2 EDO A 1 403 404 EDO EDO . 
H 3 PEG A 1 404 405 PEG PEG . 
I 2 EDO A 1 405 406 EDO EDO . 
J 4 AKR A 1 406 407 AKR PAA . 
K 2 EDO B 1 401 402 EDO EDO . 
L 3 PEG B 1 402 403 PEG PEG . 
M 3 PEG B 1 403 404 PEG PEG . 
N 4 AKR B 1 404 405 AKR PAA . 
O 2 EDO B 1 405 402 EDO EDO . 
P 2 EDO C 1 401 402 EDO EDO . 
Q 2 EDO C 1 402 403 EDO EDO . 
R 2 EDO C 1 403 404 EDO EDO . 
S 4 AKR C 1 404 405 AKR PAA . 
T 2 EDO D 1 401 403 EDO EDO . 
U 2 EDO D 1 402 404 EDO EDO . 
V 2 EDO D 1 403 405 EDO EDO . 
W 4 AKR D 1 404 406 AKR PAA . 
X 5 HOH A 1 501 47 HOH HOH . 
X 5 HOH A 2 502 65 HOH HOH . 
X 5 HOH A 3 503 112 HOH HOH . 
X 5 HOH A 4 504 64 HOH HOH . 
X 5 HOH A 5 505 80 HOH HOH . 
X 5 HOH A 6 506 87 HOH HOH . 
X 5 HOH A 7 507 2 HOH HOH . 
X 5 HOH A 8 508 96 HOH HOH . 
X 5 HOH A 9 509 205 HOH HOH . 
X 5 HOH A 10 510 31 HOH HOH . 
X 5 HOH A 11 511 4 HOH HOH . 
X 5 HOH A 12 512 26 HOH HOH . 
X 5 HOH A 13 513 37 HOH HOH . 
X 5 HOH A 14 514 119 HOH HOH . 
X 5 HOH A 15 515 131 HOH HOH . 
X 5 HOH A 16 516 82 HOH HOH . 
X 5 HOH A 17 517 110 HOH HOH . 
X 5 HOH A 18 518 88 HOH HOH . 
X 5 HOH A 19 519 202 HOH HOH . 
X 5 HOH A 20 520 137 HOH HOH . 
X 5 HOH A 21 521 71 HOH HOH . 
X 5 HOH A 22 522 146 HOH HOH . 
X 5 HOH A 23 523 142 HOH HOH . 
X 5 HOH A 24 524 69 HOH HOH . 
X 5 HOH A 25 525 93 HOH HOH . 
X 5 HOH A 26 526 42 HOH HOH . 
X 5 HOH A 27 527 144 HOH HOH . 
X 5 HOH A 28 528 81 HOH HOH . 
X 5 HOH A 29 529 22 HOH HOH . 
X 5 HOH A 30 530 104 HOH HOH . 
X 5 HOH A 31 531 20 HOH HOH . 
X 5 HOH A 32 532 121 HOH HOH . 
X 5 HOH A 33 533 98 HOH HOH . 
X 5 HOH A 34 534 106 HOH HOH . 
X 5 HOH A 35 535 254 HOH HOH . 
X 5 HOH A 36 536 180 HOH HOH . 
X 5 HOH A 37 537 29 HOH HOH . 
X 5 HOH A 38 538 54 HOH HOH . 
X 5 HOH A 39 539 100 HOH HOH . 
X 5 HOH A 40 540 10 HOH HOH . 
X 5 HOH A 41 541 157 HOH HOH . 
X 5 HOH A 42 542 85 HOH HOH . 
X 5 HOH A 43 543 52 HOH HOH . 
X 5 HOH A 44 544 62 HOH HOH . 
X 5 HOH A 45 545 127 HOH HOH . 
X 5 HOH A 46 546 118 HOH HOH . 
X 5 HOH A 47 547 45 HOH HOH . 
X 5 HOH A 48 548 167 HOH HOH . 
X 5 HOH A 49 549 188 HOH HOH . 
X 5 HOH A 50 550 16 HOH HOH . 
X 5 HOH A 51 551 15 HOH HOH . 
X 5 HOH A 52 552 181 HOH HOH . 
X 5 HOH A 53 553 102 HOH HOH . 
X 5 HOH A 54 554 150 HOH HOH . 
X 5 HOH A 55 555 210 HOH HOH . 
X 5 HOH A 56 556 159 HOH HOH . 
X 5 HOH A 57 557 219 HOH HOH . 
X 5 HOH A 58 558 125 HOH HOH . 
X 5 HOH A 59 559 95 HOH HOH . 
X 5 HOH A 60 560 163 HOH HOH . 
X 5 HOH A 61 561 136 HOH HOH . 
X 5 HOH A 62 562 116 HOH HOH . 
X 5 HOH A 63 563 259 HOH HOH . 
X 5 HOH A 64 564 255 HOH HOH . 
X 5 HOH A 65 565 197 HOH HOH . 
X 5 HOH A 66 566 262 HOH HOH . 
X 5 HOH A 67 567 200 HOH HOH . 
X 5 HOH A 68 568 134 HOH HOH . 
X 5 HOH A 69 569 245 HOH HOH . 
X 5 HOH A 70 570 261 HOH HOH . 
Y 5 HOH B 1 501 194 HOH HOH . 
Y 5 HOH B 2 502 168 HOH HOH . 
Y 5 HOH B 3 503 44 HOH HOH . 
Y 5 HOH B 4 504 56 HOH HOH . 
Y 5 HOH B 5 505 115 HOH HOH . 
Y 5 HOH B 6 506 14 HOH HOH . 
Y 5 HOH B 7 507 23 HOH HOH . 
Y 5 HOH B 8 508 113 HOH HOH . 
Y 5 HOH B 9 509 216 HOH HOH . 
Y 5 HOH B 10 510 128 HOH HOH . 
Y 5 HOH B 11 511 90 HOH HOH . 
Y 5 HOH B 12 512 9 HOH HOH . 
Y 5 HOH B 13 513 263 HOH HOH . 
Y 5 HOH B 14 514 19 HOH HOH . 
Y 5 HOH B 15 515 39 HOH HOH . 
Y 5 HOH B 16 516 158 HOH HOH . 
Y 5 HOH B 17 517 49 HOH HOH . 
Y 5 HOH B 18 518 179 HOH HOH . 
Y 5 HOH B 19 519 228 HOH HOH . 
Y 5 HOH B 20 520 101 HOH HOH . 
Y 5 HOH B 21 521 48 HOH HOH . 
Y 5 HOH B 22 522 213 HOH HOH . 
Y 5 HOH B 23 523 173 HOH HOH . 
Y 5 HOH B 24 524 155 HOH HOH . 
Y 5 HOH B 25 525 129 HOH HOH . 
Y 5 HOH B 26 526 212 HOH HOH . 
Y 5 HOH B 27 527 246 HOH HOH . 
Z 5 HOH C 1 501 152 HOH HOH . 
Z 5 HOH C 2 502 203 HOH HOH . 
Z 5 HOH C 3 503 122 HOH HOH . 
Z 5 HOH C 4 504 91 HOH HOH . 
Z 5 HOH C 5 505 1 HOH HOH . 
Z 5 HOH C 6 506 68 HOH HOH . 
Z 5 HOH C 7 507 13 HOH HOH . 
Z 5 HOH C 8 508 175 HOH HOH . 
Z 5 HOH C 9 509 51 HOH HOH . 
Z 5 HOH C 10 510 92 HOH HOH . 
Z 5 HOH C 11 511 36 HOH HOH . 
Z 5 HOH C 12 512 247 HOH HOH . 
Z 5 HOH C 13 513 70 HOH HOH . 
Z 5 HOH C 14 514 182 HOH HOH . 
Z 5 HOH C 15 515 195 HOH HOH . 
Z 5 HOH C 16 516 74 HOH HOH . 
Z 5 HOH C 17 517 147 HOH HOH . 
Z 5 HOH C 18 518 164 HOH HOH . 
Z 5 HOH C 19 519 86 HOH HOH . 
Z 5 HOH C 20 520 21 HOH HOH . 
Z 5 HOH C 21 521 120 HOH HOH . 
Z 5 HOH C 22 522 94 HOH HOH . 
Z 5 HOH C 23 523 11 HOH HOH . 
Z 5 HOH C 24 524 60 HOH HOH . 
Z 5 HOH C 25 525 35 HOH HOH . 
Z 5 HOH C 26 526 166 HOH HOH . 
Z 5 HOH C 27 527 55 HOH HOH . 
Z 5 HOH C 28 528 107 HOH HOH . 
Z 5 HOH C 29 529 242 HOH HOH . 
Z 5 HOH C 30 530 109 HOH HOH . 
Z 5 HOH C 31 531 50 HOH HOH . 
Z 5 HOH C 32 532 225 HOH HOH . 
Z 5 HOH C 33 533 214 HOH HOH . 
Z 5 HOH C 34 534 108 HOH HOH . 
Z 5 HOH C 35 535 217 HOH HOH . 
Z 5 HOH C 36 536 133 HOH HOH . 
Z 5 HOH C 37 537 46 HOH HOH . 
Z 5 HOH C 38 538 99 HOH HOH . 
Z 5 HOH C 39 539 215 HOH HOH . 
Z 5 HOH C 40 540 77 HOH HOH . 
Z 5 HOH C 41 541 204 HOH HOH . 
Z 5 HOH C 42 542 160 HOH HOH . 
Z 5 HOH C 43 543 126 HOH HOH . 
Z 5 HOH C 44 544 250 HOH HOH . 
Z 5 HOH C 45 545 41 HOH HOH . 
Z 5 HOH C 46 546 75 HOH HOH . 
Z 5 HOH C 47 547 66 HOH HOH . 
Z 5 HOH C 48 548 165 HOH HOH . 
Z 5 HOH C 49 549 103 HOH HOH . 
Z 5 HOH C 50 550 151 HOH HOH . 
Z 5 HOH C 51 551 256 HOH HOH . 
Z 5 HOH C 52 552 105 HOH HOH . 
Z 5 HOH C 53 553 233 HOH HOH . 
Z 5 HOH C 54 554 184 HOH HOH . 
Z 5 HOH C 55 555 236 HOH HOH . 
Z 5 HOH C 56 556 264 HOH HOH . 
Z 5 HOH C 57 557 169 HOH HOH . 
Z 5 HOH C 58 558 258 HOH HOH . 
AA 5 HOH D 1 501 76 HOH HOH . 
AA 5 HOH D 2 502 199 HOH HOH . 
AA 5 HOH D 3 503 79 HOH HOH . 
AA 5 HOH D 4 504 12 HOH HOH . 
AA 5 HOH D 5 505 231 HOH HOH . 
AA 5 HOH D 6 506 123 HOH HOH . 
AA 5 HOH D 7 507 7 HOH HOH . 
AA 5 HOH D 8 508 5 HOH HOH . 
AA 5 HOH D 9 509 191 HOH HOH . 
AA 5 HOH D 10 510 59 HOH HOH . 
AA 5 HOH D 11 511 17 HOH HOH . 
AA 5 HOH D 12 512 124 HOH HOH . 
AA 5 HOH D 13 513 170 HOH HOH . 
AA 5 HOH D 14 514 177 HOH HOH . 
AA 5 HOH D 15 515 24 HOH HOH . 
AA 5 HOH D 16 516 28 HOH HOH . 
AA 5 HOH D 17 517 25 HOH HOH . 
AA 5 HOH D 18 518 148 HOH HOH . 
AA 5 HOH D 19 519 61 HOH HOH . 
AA 5 HOH D 20 520 30 HOH HOH . 
AA 5 HOH D 21 521 3 HOH HOH . 
AA 5 HOH D 22 522 132 HOH HOH . 
AA 5 HOH D 23 523 83 HOH HOH . 
AA 5 HOH D 24 524 141 HOH HOH . 
AA 5 HOH D 25 525 34 HOH HOH . 
AA 5 HOH D 26 526 207 HOH HOH . 
AA 5 HOH D 27 527 209 HOH HOH . 
AA 5 HOH D 28 528 67 HOH HOH . 
AA 5 HOH D 29 529 38 HOH HOH . 
AA 5 HOH D 30 530 58 HOH HOH . 
AA 5 HOH D 31 531 53 HOH HOH . 
AA 5 HOH D 32 532 18 HOH HOH . 
AA 5 HOH D 33 533 201 HOH HOH . 
AA 5 HOH D 34 534 183 HOH HOH . 
AA 5 HOH D 35 535 89 HOH HOH . 
AA 5 HOH D 36 536 244 HOH HOH . 
AA 5 HOH D 37 537 40 HOH HOH . 
AA 5 HOH D 38 538 239 HOH HOH . 
AA 5 HOH D 39 539 43 HOH HOH . 
AA 5 HOH D 40 540 172 HOH HOH . 
AA 5 HOH D 41 541 114 HOH HOH . 
AA 5 HOH D 42 542 57 HOH HOH . 
AA 5 HOH D 43 543 140 HOH HOH . 
AA 5 HOH D 44 544 154 HOH HOH . 
AA 5 HOH D 45 545 174 HOH HOH . 
AA 5 HOH D 46 546 237 HOH HOH . 
AA 5 HOH D 47 547 27 HOH HOH . 
AA 5 HOH D 48 548 8 HOH HOH . 
AA 5 HOH D 49 549 189 HOH HOH . 
AA 5 HOH D 50 550 6 HOH HOH . 
AA 5 HOH D 51 551 32 HOH HOH . 
AA 5 HOH D 52 552 111 HOH HOH . 
AA 5 HOH D 53 553 33 HOH HOH . 
AA 5 HOH D 54 554 190 HOH HOH . 
AA 5 HOH D 55 555 198 HOH HOH . 
AA 5 HOH D 56 556 222 HOH HOH . 
AA 5 HOH D 57 557 143 HOH HOH . 
AA 5 HOH D 58 558 224 HOH HOH . 
AA 5 HOH D 59 559 253 HOH HOH . 
AA 5 HOH D 60 560 97 HOH HOH . 
AA 5 HOH D 61 561 186 HOH HOH . 
AA 5 HOH D 62 562 257 HOH HOH . 
AA 5 HOH D 63 563 260 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA AKR . . . J 4 9.999 81.09 44.13 1 53.51 ? CA AKR 406 A 1 
HETATM 2 C CB AKR . . . J 4 10.121 79.833 44.504 1 50.59 ? CB AKR 406 A 1 
HETATM 3 C C AKR . . . J 4 10.773 81.604 42.918 1 59.21 ? C AKR 406 A 1 
HETATM 4 O O AKR . . . J 4 10.26 81.539 41.77 1 51.96 ? O AKR 406 A 1 
HETATM 5 O OXT AKR . . . J 4 11.923 82.094 43.069 1 53.95 -1 OXT AKR 406 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           5 
#