data_8GMI
#
_model_server_result.job_id            '_flXkUhFqZCCeIcjx-kgaA' 
_model_server_result.datetime_utc      '2024-11-12 21:20:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gmi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":401}' 
#
_entry.id    8GMI 
#
_exptl.entry_id    8GMI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8GMI 
_cell.length_a            122.017 
_cell.length_b            167.486 
_cell.length_c            220.997 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GMI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,K,V,W 1 1 
C,D,L,M,N,O,X,Y 2 1 
E,F,P,Q,R,S,Z,AA 3 1 
G,H,T,U,BA,CA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 143 A CYS 143 1_555 I SE1 9JT . A 9JT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
covale ? covale2 B SG CYS 143 B CYS 143 1_555 K SE1 9JT . B 9JT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
covale ? covale3 C SG CYS 143 C CYS 143 1_555 M SE1 9JT . C 9JT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
covale ? covale4 D SG CYS 143 D CYS 143 1_555 O SE1 9JT . D 9JT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
covale ? covale5 E SG CYS 143 E CYS 143 1_555 Q SE1 9JT . E 9JT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
covale ? covale6 F SG CYS 143 F CYS 143 1_555 S SE1 9JT . F 9JT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
covale ? covale7 G SG CYS 143 G CYS 143 1_555 T SE1 9JT . G 9JT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
covale ? covale8 H SG CYS 143 H CYS 143 1_555 U SE1 9JT . H 9JT 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 111 n n 
CAC OA1 FLC doub 112 n n 
CAC OA2 FLC sing 113 n n 
CA CB FLC sing 114 n n 
CA HA1 FLC sing 115 n n 
CA HA2 FLC sing 116 n n 
CB CBC FLC sing 117 n n 
CB CG FLC sing 118 n n 
CB OHB FLC sing 119 n n 
CBC OB1 FLC doub 120 n n 
CBC OB2 FLC sing 121 n n 
CG CGC FLC sing 122 n n 
CG HG1 FLC sing 123 n n 
CG HG2 FLC sing 124 n n 
CGC OG1 FLC doub 125 n n 
CGC OG2 FLC sing 126 n n 
OHB HOB FLC sing 127 n n 
#
_atom_sites.entry_id                     8GMI 
_atom_sites.fract_transf_matrix[1][1]    0.008196 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005971 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 9JT A 1 401 143 9JT LIG . 
J 3 FLC B 1 401 401 FLC FLC . 
K 2 9JT B 1 402 143 9JT LIG . 
L 3 FLC C 1 401 401 FLC FLC . 
M 2 9JT C 1 402 143 9JT LIG . 
N 3 FLC D 1 401 401 FLC FLC . 
O 2 9JT D 1 402 143 9JT LIG . 
P 3 FLC E 1 401 401 FLC FLC . 
Q 2 9JT E 1 402 143 9JT LIG . 
R 3 FLC F 1 401 401 FLC FLC . 
S 2 9JT F 1 402 143 9JT LIG . 
T 2 9JT G 1 401 143 9JT LIG . 
U 2 9JT H 1 401 143 9JT LIG . 
V 4 HOH A 1 501 89 HOH HOH . 
V 4 HOH A 2 502 9 HOH HOH . 
V 4 HOH A 3 503 2 HOH HOH . 
V 4 HOH A 4 504 54 HOH HOH . 
V 4 HOH A 5 505 48 HOH HOH . 
V 4 HOH A 6 506 42 HOH HOH . 
V 4 HOH A 7 507 119 HOH HOH . 
V 4 HOH A 8 508 95 HOH HOH . 
V 4 HOH A 9 509 51 HOH HOH . 
V 4 HOH A 10 510 83 HOH HOH . 
V 4 HOH A 11 511 25 HOH HOH . 
V 4 HOH A 12 512 39 HOH HOH . 
V 4 HOH A 13 513 116 HOH HOH . 
V 4 HOH A 14 514 66 HOH HOH . 
W 4 HOH B 1 501 78 HOH HOH . 
W 4 HOH B 2 502 5 HOH HOH . 
W 4 HOH B 3 503 27 HOH HOH . 
W 4 HOH B 4 504 52 HOH HOH . 
W 4 HOH B 5 505 17 HOH HOH . 
W 4 HOH B 6 506 34 HOH HOH . 
W 4 HOH B 7 507 63 HOH HOH . 
W 4 HOH B 8 508 90 HOH HOH . 
W 4 HOH B 9 509 38 HOH HOH . 
W 4 HOH B 10 510 15 HOH HOH . 
W 4 HOH B 11 511 59 HOH HOH . 
W 4 HOH B 12 512 18 HOH HOH . 
W 4 HOH B 13 513 96 HOH HOH . 
W 4 HOH B 14 514 84 HOH HOH . 
W 4 HOH B 15 515 86 HOH HOH . 
W 4 HOH B 16 516 58 HOH HOH . 
W 4 HOH B 17 517 109 HOH HOH . 
W 4 HOH B 18 518 102 HOH HOH . 
W 4 HOH B 19 519 80 HOH HOH . 
W 4 HOH B 20 520 99 HOH HOH . 
X 4 HOH C 1 501 41 HOH HOH . 
X 4 HOH C 2 502 23 HOH HOH . 
X 4 HOH C 3 503 65 HOH HOH . 
X 4 HOH C 4 504 106 HOH HOH . 
X 4 HOH C 5 505 4 HOH HOH . 
X 4 HOH C 6 506 75 HOH HOH . 
X 4 HOH C 7 507 53 HOH HOH . 
X 4 HOH C 8 508 91 HOH HOH . 
X 4 HOH C 9 509 121 HOH HOH . 
X 4 HOH C 10 510 98 HOH HOH . 
X 4 HOH C 11 511 60 HOH HOH . 
X 4 HOH C 12 512 20 HOH HOH . 
X 4 HOH C 13 513 104 HOH HOH . 
X 4 HOH C 14 514 43 HOH HOH . 
X 4 HOH C 15 515 112 HOH HOH . 
X 4 HOH C 16 516 111 HOH HOH . 
X 4 HOH C 17 517 14 HOH HOH . 
X 4 HOH C 18 518 92 HOH HOH . 
X 4 HOH C 19 519 81 HOH HOH . 
X 4 HOH C 20 520 122 HOH HOH . 
Y 4 HOH D 1 501 76 HOH HOH . 
Y 4 HOH D 2 502 87 HOH HOH . 
Y 4 HOH D 3 503 19 HOH HOH . 
Y 4 HOH D 4 504 107 HOH HOH . 
Y 4 HOH D 5 505 72 HOH HOH . 
Y 4 HOH D 6 506 69 HOH HOH . 
Y 4 HOH D 7 507 37 HOH HOH . 
Y 4 HOH D 8 508 32 HOH HOH . 
Y 4 HOH D 9 509 61 HOH HOH . 
Y 4 HOH D 10 510 28 HOH HOH . 
Y 4 HOH D 11 511 22 HOH HOH . 
Y 4 HOH D 12 512 46 HOH HOH . 
Y 4 HOH D 13 513 45 HOH HOH . 
Y 4 HOH D 14 514 24 HOH HOH . 
Y 4 HOH D 15 515 77 HOH HOH . 
Y 4 HOH D 16 516 31 HOH HOH . 
Y 4 HOH D 17 517 73 HOH HOH . 
Y 4 HOH D 18 518 57 HOH HOH . 
Z 4 HOH E 1 501 94 HOH HOH . 
Z 4 HOH E 2 502 6 HOH HOH . 
Z 4 HOH E 3 503 29 HOH HOH . 
Z 4 HOH E 4 504 10 HOH HOH . 
Z 4 HOH E 5 505 21 HOH HOH . 
Z 4 HOH E 6 506 105 HOH HOH . 
Z 4 HOH E 7 507 120 HOH HOH . 
Z 4 HOH E 8 508 30 HOH HOH . 
Z 4 HOH E 9 509 56 HOH HOH . 
Z 4 HOH E 10 510 47 HOH HOH . 
Z 4 HOH E 11 511 11 HOH HOH . 
Z 4 HOH E 12 512 35 HOH HOH . 
Z 4 HOH E 13 513 117 HOH HOH . 
Z 4 HOH E 14 514 85 HOH HOH . 
Z 4 HOH E 15 515 36 HOH HOH . 
Z 4 HOH E 16 516 64 HOH HOH . 
Z 4 HOH E 17 517 40 HOH HOH . 
Z 4 HOH E 18 518 101 HOH HOH . 
Z 4 HOH E 19 519 55 HOH HOH . 
Z 4 HOH E 20 520 44 HOH HOH . 
Z 4 HOH E 21 521 49 HOH HOH . 
Z 4 HOH E 22 522 115 HOH HOH . 
Z 4 HOH E 23 523 3 HOH HOH . 
Z 4 HOH E 24 524 100 HOH HOH . 
Z 4 HOH E 25 525 108 HOH HOH . 
Z 4 HOH E 26 526 79 HOH HOH . 
Z 4 HOH E 27 527 1 HOH HOH . 
Z 4 HOH E 28 528 12 HOH HOH . 
Z 4 HOH E 29 529 114 HOH HOH . 
Z 4 HOH E 30 530 82 HOH HOH . 
Z 4 HOH E 31 531 88 HOH HOH . 
AA 4 HOH F 1 501 118 HOH HOH . 
AA 4 HOH F 2 502 93 HOH HOH . 
AA 4 HOH F 3 503 26 HOH HOH . 
AA 4 HOH F 4 504 71 HOH HOH . 
AA 4 HOH F 5 505 62 HOH HOH . 
AA 4 HOH F 6 506 8 HOH HOH . 
AA 4 HOH F 7 507 103 HOH HOH . 
AA 4 HOH F 8 508 16 HOH HOH . 
AA 4 HOH F 9 509 67 HOH HOH . 
AA 4 HOH F 10 510 110 HOH HOH . 
AA 4 HOH F 11 511 33 HOH HOH . 
AA 4 HOH F 12 512 50 HOH HOH . 
BA 4 HOH G 1 501 13 HOH HOH . 
BA 4 HOH G 2 502 74 HOH HOH . 
CA 4 HOH H 1 501 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . N 3 -6.867 -56.503 -19.643 1 70.48 ? CAC FLC 401 D 1 
HETATM 2 C CA FLC . . . N 3 -6.988 -56.396 -21.162 1 59.75 ? CA FLC 401 D 1 
HETATM 3 C CB FLC . . . N 3 -5.638 -56.023 -21.773 1 60.67 ? CB FLC 401 D 1 
HETATM 4 C CBC FLC . . . N 3 -5.502 -54.502 -21.792 1 64.47 ? CBC FLC 401 D 1 
HETATM 5 C CG FLC . . . N 3 -5.552 -56.537 -23.207 1 58.09 ? CG FLC 401 D 1 
HETATM 6 C CGC FLC . . . N 3 -5.46 -58.061 -23.248 1 57.85 ? CGC FLC 401 D 1 
HETATM 7 O OA1 FLC . . . N 3 -7.218 -57.562 -19.059 1 73.4 ? OA1 FLC 401 D 1 
HETATM 8 O OA2 FLC . . . N 3 -6.418 -55.538 -18.972 1 72.66 ? OA2 FLC 401 D 1 
HETATM 9 O OB1 FLC . . . N 3 -5.879 -53.851 -22.802 1 63.33 ? OB1 FLC 401 D 1 
HETATM 10 O OB2 FLC . . . N 3 -5.012 -53.897 -20.803 1 77.74 ? OB2 FLC 401 D 1 
HETATM 11 O OG1 FLC . . . N 3 -4.334 -58.614 -23.35 1 67.65 ? OG1 FLC 401 D 1 
HETATM 12 O OG2 FLC . . . N 3 -6.501 -58.766 -23.189 1 58.52 ? OG2 FLC 401 D 1 
HETATM 13 O OHB FLC . . . N 3 -4.609 -56.581 -21.003 1 60.32 ? OHB FLC 401 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#