data_8GNE # _model_server_result.job_id C8iNgxEe8vtUwVl1b576xw _model_server_result.datetime_utc '2024-12-30 17:29:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1212}' # _entry.id 8GNE # _exptl.entry_id 8GNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GNE _cell.length_a 39.35 _cell.length_b 180.51 _cell.length_c 141.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 364 n n C10 C9 OLC doub 365 n n C10 C11 OLC sing 366 n n C9 C8 OLC sing 367 n n C17 C16 OLC sing 368 z n C11 C12 OLC sing 369 n n C8 C7 OLC sing 370 n n C24 C22 OLC sing 371 n n C24 O25 OLC sing 372 n n C16 C15 OLC sing 373 n n C12 C13 OLC sing 374 n n C7 C6 OLC sing 375 n n C15 C14 OLC sing 376 n n C13 C14 OLC sing 377 n n C6 C5 OLC sing 378 n n C5 C4 OLC sing 379 n n C4 C3 OLC sing 380 n n C3 C2 OLC sing 381 n n C2 C1 OLC sing 382 n n C21 C22 OLC sing 383 n n C21 O20 OLC sing 384 n n C1 O19 OLC doub 385 n n C1 O20 OLC sing 386 n n C22 O23 OLC sing 387 n n C18 H18 OLC sing 388 n n C18 H18A OLC sing 389 n n C18 H18B OLC sing 390 n n C10 H10 OLC sing 391 n n C9 H9 OLC sing 392 n n C17 H17 OLC sing 393 n n C17 H17A OLC sing 394 n n C11 H11 OLC sing 395 n n C11 H11A OLC sing 396 n n C8 H8 OLC sing 397 n n C8 H8A OLC sing 398 n n C24 H24 OLC sing 399 n n C24 H24A OLC sing 400 n n C16 H16 OLC sing 401 n n C16 H16A OLC sing 402 n n C12 H12 OLC sing 403 n n C12 H12A OLC sing 404 n n C7 H7 OLC sing 405 n n C7 H7A OLC sing 406 n n C15 H15 OLC sing 407 n n C15 H15A OLC sing 408 n n C13 H13 OLC sing 409 n n C13 H13A OLC sing 410 n n C6 H6 OLC sing 411 n n C6 H6A OLC sing 412 n n C14 H14 OLC sing 413 n n C14 H14A OLC sing 414 n n C5 H5 OLC sing 415 n n C5 H5A OLC sing 416 n n C4 H4 OLC sing 417 n n C4 H4A OLC sing 418 n n C3 H3 OLC sing 419 n n C3 H3A OLC sing 420 n n C2 H2 OLC sing 421 n n C2 H2A OLC sing 422 n n C21 H21 OLC sing 423 n n C21 H21A OLC sing 424 n n C22 H22 OLC sing 425 n n O25 HO25 OLC sing 426 n n O23 HO23 OLC sing 427 n n # _atom_sites.entry_id 8GNE _atom_sites.fract_transf_matrix[1][1] 0.025413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQR A 1 1201 1201 JQR KW6 . C 3 CLR A 1 1202 1301 CLR CLR . D 3 CLR A 1 1203 1302 CLR CLR . E 3 CLR A 1 1204 1303 CLR CLR . F 4 OLC A 1 1205 1401 OLC OLC . G 4 OLC A 1 1206 1402 OLC OLC . H 4 OLC A 1 1207 1403 OLC OLC . I 4 OLC A 1 1208 1404 OLC OLC . J 4 OLC A 1 1209 1405 OLC OLC . K 4 OLC A 1 1210 1406 OLC OLC . L 4 OLC A 1 1211 1407 OLC OLC . M 4 OLC A 1 1212 1408 OLC OLC . N 4 OLC A 1 1213 1409 OLC OLC . O 4 OLC A 1 1214 1410 OLC OLC . P 4 OLC A 1 1215 1411 OLC OLC . Q 4 OLC A 1 1216 1412 OLC OLC . R 4 OLC A 1 1217 1413 OLC OLC . S 4 OLC A 1 1218 1414 OLC OLC . T 4 OLC A 1 1219 1415 OLC OLC . U 4 OLC A 1 1220 1416 OLC OLC . V 4 OLC A 1 1221 1417 OLC OLC . W 4 OLC A 1 1222 1418 OLC OLC . X 5 PE4 A 1 1223 1501 PE4 PE4 . Y 6 NA A 1 1224 2000 NA NA . Z 7 HOH A 1 1301 2042 HOH HOH . Z 7 HOH A 2 1302 2038 HOH HOH . Z 7 HOH A 3 1303 2052 HOH HOH . Z 7 HOH A 4 1304 2030 HOH HOH . Z 7 HOH A 5 1305 2001 HOH HOH . Z 7 HOH A 6 1306 2045 HOH HOH . Z 7 HOH A 7 1307 2037 HOH HOH . Z 7 HOH A 8 1308 2004 HOH HOH . Z 7 HOH A 9 1309 2011 HOH HOH . Z 7 HOH A 10 1310 2008 HOH HOH . Z 7 HOH A 11 1311 2016 HOH HOH . Z 7 HOH A 12 1312 2026 HOH HOH . Z 7 HOH A 13 1313 2014 HOH HOH . Z 7 HOH A 14 1314 2035 HOH HOH . Z 7 HOH A 15 1315 2002 HOH HOH . Z 7 HOH A 16 1316 2044 HOH HOH . Z 7 HOH A 17 1317 2005 HOH HOH . Z 7 HOH A 18 1318 2020 HOH HOH . Z 7 HOH A 19 1319 2024 HOH HOH . Z 7 HOH A 20 1320 2003 HOH HOH . Z 7 HOH A 21 1321 2049 HOH HOH . Z 7 HOH A 22 1322 2028 HOH HOH . Z 7 HOH A 23 1323 2033 HOH HOH . Z 7 HOH A 24 1324 2006 HOH HOH . Z 7 HOH A 25 1325 2048 HOH HOH . Z 7 HOH A 26 1326 2018 HOH HOH . Z 7 HOH A 27 1327 2019 HOH HOH . Z 7 HOH A 28 1328 2054 HOH HOH . Z 7 HOH A 29 1329 2023 HOH HOH . Z 7 HOH A 30 1330 2029 HOH HOH . Z 7 HOH A 31 1331 2007 HOH HOH . Z 7 HOH A 32 1332 2053 HOH HOH . Z 7 HOH A 33 1333 2025 HOH HOH . Z 7 HOH A 34 1334 2015 HOH HOH . Z 7 HOH A 35 1335 2061 HOH HOH . Z 7 HOH A 36 1336 2046 HOH HOH . Z 7 HOH A 37 1337 2040 HOH HOH . Z 7 HOH A 38 1338 2041 HOH HOH . Z 7 HOH A 39 1339 2021 HOH HOH . Z 7 HOH A 40 1340 2062 HOH HOH . Z 7 HOH A 41 1341 2059 HOH HOH . Z 7 HOH A 42 1342 2009 HOH HOH . Z 7 HOH A 43 1343 2050 HOH HOH . Z 7 HOH A 44 1344 2010 HOH HOH . Z 7 HOH A 45 1345 2051 HOH HOH . Z 7 HOH A 46 1346 2060 HOH HOH . Z 7 HOH A 47 1347 2032 HOH HOH . Z 7 HOH A 48 1348 2034 HOH HOH . Z 7 HOH A 49 1349 2017 HOH HOH . Z 7 HOH A 50 1350 2058 HOH HOH . Z 7 HOH A 51 1351 2022 HOH HOH . Z 7 HOH A 52 1352 2027 HOH HOH . Z 7 HOH A 53 1353 2031 HOH HOH . Z 7 HOH A 54 1354 2043 HOH HOH . Z 7 HOH A 55 1355 2012 HOH HOH . Z 7 HOH A 56 1356 2039 HOH HOH . Z 7 HOH A 57 1357 2036 HOH HOH . Z 7 HOH A 58 1358 2057 HOH HOH . Z 7 HOH A 59 1359 2013 HOH HOH . Z 7 HOH A 60 1360 2055 HOH HOH . Z 7 HOH A 61 1361 2047 HOH HOH . Z 7 HOH A 62 1362 2056 HOH HOH . Z 7 HOH A 63 1363 2063 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . M 4 -13.23 3.706 27.891 1 72.87 ? C10 OLC 1212 A 1 HETATM 2 C C9 OLC . . . M 4 -13.254 2.556 28.564 1 70.79 ? C9 OLC 1212 A 1 HETATM 3 C C11 OLC . . . M 4 -14.485 4.429 27.462 1 77.24 ? C11 OLC 1212 A 1 HETATM 4 C C8 OLC . . . M 4 -14.549 1.889 28.952 1 73.23 ? C8 OLC 1212 A 1 HETATM 5 C C24 OLC . . . M 4 -17.226 -11.187 31.398 1 100.31 ? C24 OLC 1212 A 1 HETATM 6 C C12 OLC . . . M 4 -14.843 5.501 28.49 1 77.94 ? C12 OLC 1212 A 1 HETATM 7 C C7 OLC . . . M 4 -14.314 0.696 29.88 1 72.14 ? C7 OLC 1212 A 1 HETATM 8 C C6 OLC . . . M 4 -15.415 -0.363 29.744 1 69.33 ? C6 OLC 1212 A 1 HETATM 9 C C5 OLC . . . M 4 -14.943 -1.706 30.276 1 68.2 ? C5 OLC 1212 A 1 HETATM 10 C C4 OLC . . . M 4 -16.101 -2.659 30.546 1 65.1 ? C4 OLC 1212 A 1 HETATM 11 C C3 OLC . . . M 4 -15.704 -4.084 30.215 1 63.98 ? C3 OLC 1212 A 1 HETATM 12 C C2 OLC . . . M 4 -16.485 -5.076 31.064 1 70.2 ? C2 OLC 1212 A 1 HETATM 13 C C21 OLC . . . M 4 -16.957 -8.712 31.311 1 93.75 ? C21 OLC 1212 A 1 HETATM 14 C C1 OLC . . . M 4 -16.109 -6.47 30.627 1 77.26 ? C1 OLC 1212 A 1 HETATM 15 C C22 OLC . . . M 4 -16.219 -10.043 31.478 1 99.02 ? C22 OLC 1212 A 1 HETATM 16 O O19 OLC . . . M 4 -15.806 -6.665 29.465 1 73.89 ? O19 OLC 1212 A 1 HETATM 17 O O25 OLC . . . M 4 -16.768 -12.271 32.208 1 95.28 ? O25 OLC 1212 A 1 HETATM 18 O O23 OLC . . . M 4 -15.225 -10.232 30.456 1 102.77 ? O23 OLC 1212 A 1 HETATM 19 O O20 OLC . . . M 4 -16.101 -7.594 31.559 1 85.26 ? O20 OLC 1212 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #