data_8GNE # _model_server_result.job_id pEiUIPVWTKtApaEH7usQpA _model_server_result.datetime_utc '2024-12-21 15:55:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1223}' # _entry.id 8GNE # _exptl.entry_id 8GNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.436 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GNE _cell.length_a 39.35 _cell.length_b 180.51 _cell.length_c 141.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'C16 H34 O8' _chem_comp.formula_weight 354.436 _chem_comp.id PE4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG4000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PE4 sing 428 n n O1 HO1 PE4 sing 429 n n C1 C2 PE4 sing 430 n n C1 H11 PE4 sing 431 n n C1 H12 PE4 sing 432 n n C2 O2 PE4 sing 433 n n C2 H21 PE4 sing 434 n n C2 H22 PE4 sing 435 n n O2 C3 PE4 sing 436 n n C3 C4 PE4 sing 437 n n C3 H31 PE4 sing 438 n n C3 H32 PE4 sing 439 n n C4 O3 PE4 sing 440 n n C4 H41 PE4 sing 441 n n C4 H42 PE4 sing 442 n n O3 C5 PE4 sing 443 n n C5 C6 PE4 sing 444 n n C5 H51 PE4 sing 445 n n C5 H52 PE4 sing 446 n n C6 O4 PE4 sing 447 n n C6 H61 PE4 sing 448 n n C6 H62 PE4 sing 449 n n O4 C7 PE4 sing 450 n n C7 C8 PE4 sing 451 n n C7 H71 PE4 sing 452 n n C7 H72 PE4 sing 453 n n C8 O5 PE4 sing 454 n n C8 H81 PE4 sing 455 n n C8 H82 PE4 sing 456 n n O5 C9 PE4 sing 457 n n C9 C10 PE4 sing 458 n n C9 H91 PE4 sing 459 n n C9 H92 PE4 sing 460 n n C10 O6 PE4 sing 461 n n C10 H101 PE4 sing 462 n n C10 H102 PE4 sing 463 n n O6 C11 PE4 sing 464 n n C11 C12 PE4 sing 465 n n C11 H111 PE4 sing 466 n n C11 H112 PE4 sing 467 n n C12 O7 PE4 sing 468 n n C12 H121 PE4 sing 469 n n C12 H122 PE4 sing 470 n n O7 C13 PE4 sing 471 n n C13 C14 PE4 sing 472 n n C13 H131 PE4 sing 473 n n C13 H132 PE4 sing 474 n n C14 O8 PE4 sing 475 n n C14 H141 PE4 sing 476 n n C14 H142 PE4 sing 477 n n O8 C15 PE4 sing 478 n n C15 C16 PE4 sing 479 n n C15 H151 PE4 sing 480 n n C15 H152 PE4 sing 481 n n C16 H161 PE4 sing 482 n n C16 H162 PE4 sing 483 n n C16 H163 PE4 sing 484 n n # _atom_sites.entry_id 8GNE _atom_sites.fract_transf_matrix[1][1] 0.025413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQR A 1 1201 1201 JQR KW6 . C 3 CLR A 1 1202 1301 CLR CLR . D 3 CLR A 1 1203 1302 CLR CLR . E 3 CLR A 1 1204 1303 CLR CLR . F 4 OLC A 1 1205 1401 OLC OLC . G 4 OLC A 1 1206 1402 OLC OLC . H 4 OLC A 1 1207 1403 OLC OLC . I 4 OLC A 1 1208 1404 OLC OLC . J 4 OLC A 1 1209 1405 OLC OLC . K 4 OLC A 1 1210 1406 OLC OLC . L 4 OLC A 1 1211 1407 OLC OLC . M 4 OLC A 1 1212 1408 OLC OLC . N 4 OLC A 1 1213 1409 OLC OLC . O 4 OLC A 1 1214 1410 OLC OLC . P 4 OLC A 1 1215 1411 OLC OLC . Q 4 OLC A 1 1216 1412 OLC OLC . R 4 OLC A 1 1217 1413 OLC OLC . S 4 OLC A 1 1218 1414 OLC OLC . T 4 OLC A 1 1219 1415 OLC OLC . U 4 OLC A 1 1220 1416 OLC OLC . V 4 OLC A 1 1221 1417 OLC OLC . W 4 OLC A 1 1222 1418 OLC OLC . X 5 PE4 A 1 1223 1501 PE4 PE4 . Y 6 NA A 1 1224 2000 NA NA . Z 7 HOH A 1 1301 2042 HOH HOH . Z 7 HOH A 2 1302 2038 HOH HOH . Z 7 HOH A 3 1303 2052 HOH HOH . Z 7 HOH A 4 1304 2030 HOH HOH . Z 7 HOH A 5 1305 2001 HOH HOH . Z 7 HOH A 6 1306 2045 HOH HOH . Z 7 HOH A 7 1307 2037 HOH HOH . Z 7 HOH A 8 1308 2004 HOH HOH . Z 7 HOH A 9 1309 2011 HOH HOH . Z 7 HOH A 10 1310 2008 HOH HOH . Z 7 HOH A 11 1311 2016 HOH HOH . Z 7 HOH A 12 1312 2026 HOH HOH . Z 7 HOH A 13 1313 2014 HOH HOH . Z 7 HOH A 14 1314 2035 HOH HOH . Z 7 HOH A 15 1315 2002 HOH HOH . Z 7 HOH A 16 1316 2044 HOH HOH . Z 7 HOH A 17 1317 2005 HOH HOH . Z 7 HOH A 18 1318 2020 HOH HOH . Z 7 HOH A 19 1319 2024 HOH HOH . Z 7 HOH A 20 1320 2003 HOH HOH . Z 7 HOH A 21 1321 2049 HOH HOH . Z 7 HOH A 22 1322 2028 HOH HOH . Z 7 HOH A 23 1323 2033 HOH HOH . Z 7 HOH A 24 1324 2006 HOH HOH . Z 7 HOH A 25 1325 2048 HOH HOH . Z 7 HOH A 26 1326 2018 HOH HOH . Z 7 HOH A 27 1327 2019 HOH HOH . Z 7 HOH A 28 1328 2054 HOH HOH . Z 7 HOH A 29 1329 2023 HOH HOH . Z 7 HOH A 30 1330 2029 HOH HOH . Z 7 HOH A 31 1331 2007 HOH HOH . Z 7 HOH A 32 1332 2053 HOH HOH . Z 7 HOH A 33 1333 2025 HOH HOH . Z 7 HOH A 34 1334 2015 HOH HOH . Z 7 HOH A 35 1335 2061 HOH HOH . Z 7 HOH A 36 1336 2046 HOH HOH . Z 7 HOH A 37 1337 2040 HOH HOH . Z 7 HOH A 38 1338 2041 HOH HOH . Z 7 HOH A 39 1339 2021 HOH HOH . Z 7 HOH A 40 1340 2062 HOH HOH . Z 7 HOH A 41 1341 2059 HOH HOH . Z 7 HOH A 42 1342 2009 HOH HOH . Z 7 HOH A 43 1343 2050 HOH HOH . Z 7 HOH A 44 1344 2010 HOH HOH . Z 7 HOH A 45 1345 2051 HOH HOH . Z 7 HOH A 46 1346 2060 HOH HOH . Z 7 HOH A 47 1347 2032 HOH HOH . Z 7 HOH A 48 1348 2034 HOH HOH . Z 7 HOH A 49 1349 2017 HOH HOH . Z 7 HOH A 50 1350 2058 HOH HOH . Z 7 HOH A 51 1351 2022 HOH HOH . Z 7 HOH A 52 1352 2027 HOH HOH . Z 7 HOH A 53 1353 2031 HOH HOH . Z 7 HOH A 54 1354 2043 HOH HOH . Z 7 HOH A 55 1355 2012 HOH HOH . Z 7 HOH A 56 1356 2039 HOH HOH . Z 7 HOH A 57 1357 2036 HOH HOH . Z 7 HOH A 58 1358 2057 HOH HOH . Z 7 HOH A 59 1359 2013 HOH HOH . Z 7 HOH A 60 1360 2055 HOH HOH . Z 7 HOH A 61 1361 2047 HOH HOH . Z 7 HOH A 62 1362 2056 HOH HOH . Z 7 HOH A 63 1363 2063 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PE4 . . . X 5 7.498 11.414 6.847 1 58.72 ? O1 PE4 1223 A 1 HETATM 2 C C1 PE4 . . . X 5 7.285 12.094 5.597 1 66.76 ? C1 PE4 1223 A 1 HETATM 3 C C2 PE4 . . . X 5 7.923 11.389 4.405 1 67.11 ? C2 PE4 1223 A 1 HETATM 4 O O2 PE4 . . . X 5 8.6 12.318 3.554 1 59.5 ? O2 PE4 1223 A 1 HETATM 5 C C3 PE4 . . . X 5 9.844 11.808 3.09 1 67.18 ? C3 PE4 1223 A 1 HETATM 6 C C4 PE4 . . . X 5 10.532 12.818 2.234 1 70.34 ? C4 PE4 1223 A 1 HETATM 7 O O3 PE4 . . . X 5 10.776 14 2.986 1 73.14 ? O3 PE4 1223 A 1 HETATM 8 C C5 PE4 . . . X 5 11.565 14.956 2.282 1 75.82 ? C5 PE4 1223 A 1 HETATM 9 C C6 PE4 . . . X 5 13.001 14.523 2.259 1 74.54 ? C6 PE4 1223 A 1 HETATM 10 O O4 PE4 . . . X 5 13.851 15.642 2.492 1 74.85 ? O4 PE4 1223 A 1 HETATM 11 C C7 PE4 . . . X 5 14.742 15.441 3.586 1 77.31 ? C7 PE4 1223 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 11 #