data_8GNE # _model_server_result.job_id Ndjaq57SPdXAVbAx7I89KA _model_server_result.datetime_utc '2024-12-21 15:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gne # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1224}' # _entry.id 8GNE # _exptl.entry_id 8GNE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8GNE _cell.length_a 39.35 _cell.length_b 180.51 _cell.length_c 141.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GNE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A OD1 ASP 61 A ASP 52 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc2 A OG SER 100 A SER 91 1_555 Y NA NA . A NA 1224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8GNE _atom_sites.fract_transf_matrix[1][1] 0.025413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQR A 1 1201 1201 JQR KW6 . C 3 CLR A 1 1202 1301 CLR CLR . D 3 CLR A 1 1203 1302 CLR CLR . E 3 CLR A 1 1204 1303 CLR CLR . F 4 OLC A 1 1205 1401 OLC OLC . G 4 OLC A 1 1206 1402 OLC OLC . H 4 OLC A 1 1207 1403 OLC OLC . I 4 OLC A 1 1208 1404 OLC OLC . J 4 OLC A 1 1209 1405 OLC OLC . K 4 OLC A 1 1210 1406 OLC OLC . L 4 OLC A 1 1211 1407 OLC OLC . M 4 OLC A 1 1212 1408 OLC OLC . N 4 OLC A 1 1213 1409 OLC OLC . O 4 OLC A 1 1214 1410 OLC OLC . P 4 OLC A 1 1215 1411 OLC OLC . Q 4 OLC A 1 1216 1412 OLC OLC . R 4 OLC A 1 1217 1413 OLC OLC . S 4 OLC A 1 1218 1414 OLC OLC . T 4 OLC A 1 1219 1415 OLC OLC . U 4 OLC A 1 1220 1416 OLC OLC . V 4 OLC A 1 1221 1417 OLC OLC . W 4 OLC A 1 1222 1418 OLC OLC . X 5 PE4 A 1 1223 1501 PE4 PE4 . Y 6 NA A 1 1224 2000 NA NA . Z 7 HOH A 1 1301 2042 HOH HOH . Z 7 HOH A 2 1302 2038 HOH HOH . Z 7 HOH A 3 1303 2052 HOH HOH . Z 7 HOH A 4 1304 2030 HOH HOH . Z 7 HOH A 5 1305 2001 HOH HOH . Z 7 HOH A 6 1306 2045 HOH HOH . Z 7 HOH A 7 1307 2037 HOH HOH . Z 7 HOH A 8 1308 2004 HOH HOH . Z 7 HOH A 9 1309 2011 HOH HOH . Z 7 HOH A 10 1310 2008 HOH HOH . Z 7 HOH A 11 1311 2016 HOH HOH . Z 7 HOH A 12 1312 2026 HOH HOH . Z 7 HOH A 13 1313 2014 HOH HOH . Z 7 HOH A 14 1314 2035 HOH HOH . Z 7 HOH A 15 1315 2002 HOH HOH . Z 7 HOH A 16 1316 2044 HOH HOH . Z 7 HOH A 17 1317 2005 HOH HOH . Z 7 HOH A 18 1318 2020 HOH HOH . Z 7 HOH A 19 1319 2024 HOH HOH . Z 7 HOH A 20 1320 2003 HOH HOH . Z 7 HOH A 21 1321 2049 HOH HOH . Z 7 HOH A 22 1322 2028 HOH HOH . Z 7 HOH A 23 1323 2033 HOH HOH . Z 7 HOH A 24 1324 2006 HOH HOH . Z 7 HOH A 25 1325 2048 HOH HOH . Z 7 HOH A 26 1326 2018 HOH HOH . Z 7 HOH A 27 1327 2019 HOH HOH . Z 7 HOH A 28 1328 2054 HOH HOH . Z 7 HOH A 29 1329 2023 HOH HOH . Z 7 HOH A 30 1330 2029 HOH HOH . Z 7 HOH A 31 1331 2007 HOH HOH . Z 7 HOH A 32 1332 2053 HOH HOH . Z 7 HOH A 33 1333 2025 HOH HOH . Z 7 HOH A 34 1334 2015 HOH HOH . Z 7 HOH A 35 1335 2061 HOH HOH . Z 7 HOH A 36 1336 2046 HOH HOH . Z 7 HOH A 37 1337 2040 HOH HOH . Z 7 HOH A 38 1338 2041 HOH HOH . Z 7 HOH A 39 1339 2021 HOH HOH . Z 7 HOH A 40 1340 2062 HOH HOH . Z 7 HOH A 41 1341 2059 HOH HOH . Z 7 HOH A 42 1342 2009 HOH HOH . Z 7 HOH A 43 1343 2050 HOH HOH . Z 7 HOH A 44 1344 2010 HOH HOH . Z 7 HOH A 45 1345 2051 HOH HOH . Z 7 HOH A 46 1346 2060 HOH HOH . Z 7 HOH A 47 1347 2032 HOH HOH . Z 7 HOH A 48 1348 2034 HOH HOH . Z 7 HOH A 49 1349 2017 HOH HOH . Z 7 HOH A 50 1350 2058 HOH HOH . Z 7 HOH A 51 1351 2022 HOH HOH . Z 7 HOH A 52 1352 2027 HOH HOH . Z 7 HOH A 53 1353 2031 HOH HOH . Z 7 HOH A 54 1354 2043 HOH HOH . Z 7 HOH A 55 1355 2012 HOH HOH . Z 7 HOH A 56 1356 2039 HOH HOH . Z 7 HOH A 57 1357 2036 HOH HOH . Z 7 HOH A 58 1358 2057 HOH HOH . Z 7 HOH A 59 1359 2013 HOH HOH . Z 7 HOH A 60 1360 2055 HOH HOH . Z 7 HOH A 61 1361 2047 HOH HOH . Z 7 HOH A 62 1362 2056 HOH HOH . Z 7 HOH A 63 1363 2063 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Y _atom_site.label_entity_id 6 _atom_site.Cartn_x 3.481 _atom_site.Cartn_y 8.683 _atom_site.Cartn_z 16.582 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1224 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 1322 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #