data_8GNG
#
_model_server_result.job_id            j_Sp9drQW7UyQrfvNhf1dw 
_model_server_result.datetime_utc      '2024-12-04 07:49:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8gng 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":403}' 
#
_entry.id    8GNG 
#
_exptl.entry_id    8GNG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         97.72 
_cell.angle_beta          91.44 
_cell.angle_gamma         89.38 
_cell.entry_id            8GNG 
_cell.length_a            74.59 
_cell.length_b            134.84 
_cell.length_c            42.15 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8GNG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N,O,W 1 1 
D,E,F,P,Q,R,S,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 M N N 
? 5 N N N 
? 5 P N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 78 A CYS 71 1_555 A SG CYS 166 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf2 A SG CYS 81 A CYS 74 1_555 A SG CYS 153 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf3 A SG CYS 84 A CYS 77 1_555 A SG CYS 173 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf4 A SG CYS 266 A CYS 259 1_555 A SG CYS 269 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf5 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf6 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf7 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
disulf ? disulf8 C SG CYS 151 H CYS 151 1_555 C SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf9 D SG CYS 78 X CYS 71 1_555 D SG CYS 166 X CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf10 D SG CYS 81 X CYS 74 1_555 D SG CYS 153 X CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf11 D SG CYS 84 X CYS 77 1_555 D SG CYS 173 X CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf12 D SG CYS 266 X CYS 259 1_555 D SG CYS 269 X CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf13 E SG CYS 23 Y CYS 23 1_555 E SG CYS 88 Y CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
disulf ? disulf14 E SG CYS 134 Y CYS 134 1_555 E SG CYS 194 Y CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
disulf ? disulf15 F SG CYS 22 Z CYS 22 1_555 F SG CYS 96 Z CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
disulf ? disulf16 F SG CYS 151 Z CYS 151 1_555 F SG CYS 206 Z CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc1 B OD1 ASP 56 L ASP 56 1_555 O K K . L K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.203 ? 
metalc ? metalc2 E OD1 ASP 56 Y ASP 56 1_555 V K K . Y K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 291 n n 
C10 C9 OLC doub 292 n n 
C10 C11 OLC sing 293 n n 
C9 C8 OLC sing 294 n n 
C17 C16 OLC sing 295 z n 
C11 C12 OLC sing 296 n n 
C8 C7 OLC sing 297 n n 
C24 C22 OLC sing 298 n n 
C24 O25 OLC sing 299 n n 
C16 C15 OLC sing 300 n n 
C12 C13 OLC sing 301 n n 
C7 C6 OLC sing 302 n n 
C15 C14 OLC sing 303 n n 
C13 C14 OLC sing 304 n n 
C6 C5 OLC sing 305 n n 
C5 C4 OLC sing 306 n n 
C4 C3 OLC sing 307 n n 
C3 C2 OLC sing 308 n n 
C2 C1 OLC sing 309 n n 
C21 C22 OLC sing 310 n n 
C21 O20 OLC sing 311 n n 
C1 O19 OLC doub 312 n n 
C1 O20 OLC sing 313 n n 
C22 O23 OLC sing 314 n n 
C18 H18 OLC sing 315 n n 
C18 H18A OLC sing 316 n n 
C18 H18B OLC sing 317 n n 
C10 H10 OLC sing 318 n n 
C9 H9 OLC sing 319 n n 
C17 H17 OLC sing 320 n n 
C17 H17A OLC sing 321 n n 
C11 H11 OLC sing 322 n n 
C11 H11A OLC sing 323 n n 
C8 H8 OLC sing 324 n n 
C8 H8A OLC sing 325 n n 
C24 H24 OLC sing 326 n n 
C24 H24A OLC sing 327 n n 
C16 H16 OLC sing 328 n n 
C16 H16A OLC sing 329 n n 
C12 H12 OLC sing 330 n n 
C12 H12A OLC sing 331 n n 
C7 H7 OLC sing 332 n n 
C7 H7A OLC sing 333 n n 
C15 H15 OLC sing 334 n n 
C15 H15A OLC sing 335 n n 
C13 H13 OLC sing 336 n n 
C13 H13A OLC sing 337 n n 
C6 H6 OLC sing 338 n n 
C6 H6A OLC sing 339 n n 
C14 H14 OLC sing 340 n n 
C14 H14A OLC sing 341 n n 
C5 H5 OLC sing 342 n n 
C5 H5A OLC sing 343 n n 
C4 H4 OLC sing 344 n n 
C4 H4A OLC sing 345 n n 
C3 H3 OLC sing 346 n n 
C3 H3A OLC sing 347 n n 
C2 H2 OLC sing 348 n n 
C2 H2A OLC sing 349 n n 
C21 H21 OLC sing 350 n n 
C21 H21A OLC sing 351 n n 
C22 H22 OLC sing 352 n n 
O25 HO25 OLC sing 353 n n 
O23 HO23 OLC sing 354 n n 
#
_atom_sites.entry_id                     8GNG 
_atom_sites.fract_transf_matrix[1][1]    0.013407 
_atom_sites.fract_transf_matrix[1][2]    -0.000144 
_atom_sites.fract_transf_matrix[1][3]    0.000321 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007417 
_atom_sites.fract_transf_matrix[2][3]    0.001003 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023948 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 JQ9 A 1 401 401 JQ9 KW2 . 
H 5 OLC A 1 402 402 OLC OLC . 
I 5 OLC A 1 403 403 OLC OLC . 
J 5 OLC A 1 404 404 OLC OLC . 
K 5 OLC A 1 405 406 OLC OLC . 
L 6 CL A 1 406 409 CL CL . 
M 5 OLC A 1 407 402 OLC OLC . 
N 5 OLC A 1 408 405 OLC OLC . 
O 7 K L 1 301 407 K K . 
P 5 OLC X 1 401 405 OLC OLC . 
Q 4 JQ9 X 1 402 401 JQ9 KW2 . 
R 5 OLC X 1 403 403 OLC OLC . 
S 5 OLC X 1 404 404 OLC OLC . 
T 5 OLC X 1 405 406 OLC OLC . 
U 6 CL X 1 406 410 CL CL . 
V 7 K Y 1 301 408 K K . 
W 8 HOH A 1 501 1 HOH HOH . 
W 8 HOH A 2 502 2 HOH HOH . 
W 8 HOH A 3 503 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C24 OLC . . . R 5 -6.605 92.052 -0.474 1 52.64 ? C24 OLC 403 X 1 
HETATM 2 C C7 OLC . . . R 5 -9.3 83.762 1.786 1 42.46 ? C7 OLC 403 X 1 
HETATM 3 C C6 OLC . . . R 5 -9.56 85.263 1.741 1 43.93 ? C6 OLC 403 X 1 
HETATM 4 C C5 OLC . . . R 5 -8.256 86.029 1.943 1 47.22 ? C5 OLC 403 X 1 
HETATM 5 C C4 OLC . . . R 5 -8.213 87.383 1.227 1 48.49 ? C4 OLC 403 X 1 
HETATM 6 C C3 OLC . . . R 5 -8.839 88.523 2.033 1 49.86 ? C3 OLC 403 X 1 
HETATM 7 C C2 OLC . . . R 5 -8.321 89.89 1.578 1 51.91 ? C2 OLC 403 X 1 
HETATM 8 C C21 OLC . . . R 5 -9.079 92.512 -0.155 1 53.05 ? C21 OLC 403 X 1 
HETATM 9 C C1 OLC . . . R 5 -9.277 91.048 1.841 1 52.33 ? C1 OLC 403 X 1 
HETATM 10 C C22 OLC . . . R 5 -7.757 93.032 -0.716 1 52.79 ? C22 OLC 403 X 1 
HETATM 11 O O19 OLC . . . R 5 -10.272 90.932 2.526 1 54.15 ? O19 OLC 403 X 1 
HETATM 12 O O25 OLC . . . R 5 -5.39 92.552 -1.028 1 50.56 ? O25 OLC 403 X 1 
HETATM 13 O O23 OLC . . . R 5 -7.947 93.209 -2.117 1 52.1 ? O23 OLC 403 X 1 
HETATM 14 O O20 OLC . . . R 5 -9.032 92.361 1.267 1 52.78 ? O20 OLC 403 X 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#