data_8GNG # _model_server_result.job_id laGA9wMZlI3CSdeSPf1myw _model_server_result.datetime_utc '2024-12-04 07:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8gng # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":404}' # _entry.id 8GNG # _exptl.entry_id 8GNG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 97.72 _cell.angle_beta 91.44 _cell.angle_gamma 89.38 _cell.entry_id 8GNG _cell.length_a 74.59 _cell.length_b 134.84 _cell.length_c 42.15 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8GNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,W 1 1 D,E,F,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 M N N ? 5 N N N ? 5 P N N ? 5 R N N ? 5 S N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 71 1_555 A SG CYS 166 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 81 A CYS 74 1_555 A SG CYS 153 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 A SG CYS 84 A CYS 77 1_555 A SG CYS 173 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 A SG CYS 266 A CYS 259 1_555 A SG CYS 269 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf5 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf6 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf7 C SG CYS 22 H CYS 22 1_555 C SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf8 C SG CYS 151 H CYS 151 1_555 C SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 D SG CYS 78 X CYS 71 1_555 D SG CYS 166 X CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf10 D SG CYS 81 X CYS 74 1_555 D SG CYS 153 X CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf11 D SG CYS 84 X CYS 77 1_555 D SG CYS 173 X CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf12 D SG CYS 266 X CYS 259 1_555 D SG CYS 269 X CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf13 E SG CYS 23 Y CYS 23 1_555 E SG CYS 88 Y CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf14 E SG CYS 134 Y CYS 134 1_555 E SG CYS 194 Y CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf15 F SG CYS 22 Z CYS 22 1_555 F SG CYS 96 Z CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf16 F SG CYS 151 Z CYS 151 1_555 F SG CYS 206 Z CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc1 B OD1 ASP 56 L ASP 56 1_555 O K K . L K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.203 ? metalc ? metalc2 E OD1 ASP 56 Y ASP 56 1_555 V K K . Y K 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 291 n n C10 C9 OLC doub 292 n n C10 C11 OLC sing 293 n n C9 C8 OLC sing 294 n n C17 C16 OLC sing 295 z n C11 C12 OLC sing 296 n n C8 C7 OLC sing 297 n n C24 C22 OLC sing 298 n n C24 O25 OLC sing 299 n n C16 C15 OLC sing 300 n n C12 C13 OLC sing 301 n n C7 C6 OLC sing 302 n n C15 C14 OLC sing 303 n n C13 C14 OLC sing 304 n n C6 C5 OLC sing 305 n n C5 C4 OLC sing 306 n n C4 C3 OLC sing 307 n n C3 C2 OLC sing 308 n n C2 C1 OLC sing 309 n n C21 C22 OLC sing 310 n n C21 O20 OLC sing 311 n n C1 O19 OLC doub 312 n n C1 O20 OLC sing 313 n n C22 O23 OLC sing 314 n n C18 H18 OLC sing 315 n n C18 H18A OLC sing 316 n n C18 H18B OLC sing 317 n n C10 H10 OLC sing 318 n n C9 H9 OLC sing 319 n n C17 H17 OLC sing 320 n n C17 H17A OLC sing 321 n n C11 H11 OLC sing 322 n n C11 H11A OLC sing 323 n n C8 H8 OLC sing 324 n n C8 H8A OLC sing 325 n n C24 H24 OLC sing 326 n n C24 H24A OLC sing 327 n n C16 H16 OLC sing 328 n n C16 H16A OLC sing 329 n n C12 H12 OLC sing 330 n n C12 H12A OLC sing 331 n n C7 H7 OLC sing 332 n n C7 H7A OLC sing 333 n n C15 H15 OLC sing 334 n n C15 H15A OLC sing 335 n n C13 H13 OLC sing 336 n n C13 H13A OLC sing 337 n n C6 H6 OLC sing 338 n n C6 H6A OLC sing 339 n n C14 H14 OLC sing 340 n n C14 H14A OLC sing 341 n n C5 H5 OLC sing 342 n n C5 H5A OLC sing 343 n n C4 H4 OLC sing 344 n n C4 H4A OLC sing 345 n n C3 H3 OLC sing 346 n n C3 H3A OLC sing 347 n n C2 H2 OLC sing 348 n n C2 H2A OLC sing 349 n n C21 H21 OLC sing 350 n n C21 H21A OLC sing 351 n n C22 H22 OLC sing 352 n n O25 HO25 OLC sing 353 n n O23 HO23 OLC sing 354 n n # _atom_sites.entry_id 8GNG _atom_sites.fract_transf_matrix[1][1] 0.013407 _atom_sites.fract_transf_matrix[1][2] -0.000144 _atom_sites.fract_transf_matrix[1][3] 0.000321 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007417 _atom_sites.fract_transf_matrix[2][3] 0.001003 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 JQ9 A 1 401 401 JQ9 KW2 . H 5 OLC A 1 402 402 OLC OLC . I 5 OLC A 1 403 403 OLC OLC . J 5 OLC A 1 404 404 OLC OLC . K 5 OLC A 1 405 406 OLC OLC . L 6 CL A 1 406 409 CL CL . M 5 OLC A 1 407 402 OLC OLC . N 5 OLC A 1 408 405 OLC OLC . O 7 K L 1 301 407 K K . P 5 OLC X 1 401 405 OLC OLC . Q 4 JQ9 X 1 402 401 JQ9 KW2 . R 5 OLC X 1 403 403 OLC OLC . S 5 OLC X 1 404 404 OLC OLC . T 5 OLC X 1 405 406 OLC OLC . U 6 CL X 1 406 410 CL CL . V 7 K Y 1 301 408 K K . W 8 HOH A 1 501 1 HOH HOH . W 8 HOH A 2 502 2 HOH HOH . W 8 HOH A 3 503 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . S 5 -22.605 81.636 -5.974 1 49.33 ? C10 OLC 404 X 1 HETATM 2 C C9 OLC . . . S 5 -22.226 82.879 -5.659 1 50.38 ? C9 OLC 404 X 1 HETATM 3 C C11 OLC . . . S 5 -22.293 80.935 -7.278 1 49.23 ? C11 OLC 404 X 1 HETATM 4 C C8 OLC . . . S 5 -21.416 83.797 -6.549 1 50.2 ? C8 OLC 404 X 1 HETATM 5 C C24 OLC . . . S 5 -18.223 96.113 -7.778 1 71.82 ? C24 OLC 404 X 1 HETATM 6 C C12 OLC . . . S 5 -22.143 79.427 -7.049 1 50.98 ? C12 OLC 404 X 1 HETATM 7 C C7 OLC . . . S 5 -20.99 85.012 -5.724 1 49.42 ? C7 OLC 404 X 1 HETATM 8 C C13 OLC . . . S 5 -23.4 78.741 -6.493 1 51.98 ? C13 OLC 404 X 1 HETATM 9 C C6 OLC . . . S 5 -22.142 85.986 -5.494 1 48.33 ? C6 OLC 404 X 1 HETATM 10 C C14 OLC . . . S 5 -23.264 77.218 -6.496 1 52.57 ? C14 OLC 404 X 1 HETATM 11 C C5 OLC . . . S 5 -21.724 87.201 -4.677 1 49.41 ? C5 OLC 404 X 1 HETATM 12 C C4 OLC . . . S 5 -20.554 87.919 -5.344 1 51.95 ? C4 OLC 404 X 1 HETATM 13 C C3 OLC . . . S 5 -20.503 89.425 -5.096 1 53.05 ? C3 OLC 404 X 1 HETATM 14 C C2 OLC . . . S 5 -19.845 90.134 -6.292 1 55.95 ? C2 OLC 404 X 1 HETATM 15 C C21 OLC . . . S 5 -18.889 93.866 -6.825 1 69.06 ? C21 OLC 404 X 1 HETATM 16 C C1 OLC . . . S 5 -19.469 91.565 -5.949 1 60.11 ? C1 OLC 404 X 1 HETATM 17 C C22 OLC . . . S 5 -17.832 94.632 -7.634 1 71.38 ? C22 OLC 404 X 1 HETATM 18 O O19 OLC . . . S 5 -19.802 92.016 -4.868 1 61.06 ? O19 OLC 404 X 1 HETATM 19 O O25 OLC . . . S 5 -17.068 96.971 -7.829 1 71.29 ? O25 OLC 404 X 1 HETATM 20 O O23 OLC . . . S 5 -16.568 94.524 -6.97 1 72.65 ? O23 OLC 404 X 1 HETATM 21 O O20 OLC . . . S 5 -18.715 92.437 -6.862 1 65.83 ? O20 OLC 404 X 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #